ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14p21 |
|---|---|
| Clone Library Name | barley_pub |
>PAP2_ORYSA (Q6K439) Probable plastid-lipid-associated protein 2, chloroplast| precursor (Fibrillin-like protein 2) Length = 319 Score = 188 bits (478), Expect = 6e-48 Identities = 94/107 (87%), Positives = 102/107 (95%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKF+EGIIGTPQLTDSIVLPEKFE FGQNIDL+PL GIF+SIENAASSVA+TIS Sbjct: 211 SPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTIS 270 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 GQPPLKIP R+++A SWLLTTYLD ELRISRGDGSSIFVLFKEGS+L Sbjct: 271 GQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTL 317
>LIPC_SOLTU (P80471) Light-induced protein, chloroplast precursor| (Chloroplastic drought-induced stress protein CDSP-34) Length = 326 Score = 160 bits (405), Expect = 2e-39 Identities = 79/107 (73%), Positives = 88/107 (82%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFEEGIIGTPQLTDSIVLPE EF GQ IDLSP G+ TS+++ ASSVAK+IS Sbjct: 217 SPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSIS 276 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPP+K P + +A SWLLTTYLD ELRISRGD S+FVL KEGS L Sbjct: 277 SQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPL 323
>LIPC_SOLDE (O99019) Light-induced protein, chloroplast precursor (C40.4)| Length = 326 Score = 155 bits (393), Expect = 5e-38 Identities = 76/107 (71%), Positives = 86/107 (80%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFEEGIIGTPQLTDSIVLPE EF GQ ID+SP G+ TS+++ ASSV K+IS Sbjct: 217 SPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSIS 276 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPP+K P + +A SWLLTTYLD ELRI RGD S+FVL KEGS L Sbjct: 277 SQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPL 323
>PAP2_BRACM (Q94KU6) Plastid lipid-associated protein 2, chloroplast precursor| Length = 319 Score = 154 bits (389), Expect = 1e-37 Identities = 74/107 (69%), Positives = 88/107 (82%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFEEG+IGTPQLTDSI +PE EF GQ IDL+P+ G+ TS+++ A+SVA+TIS Sbjct: 210 SPKRVQIKFEEGVIGTPQLTDSIEIPEYVEFLGQKIDLTPIRGLLTSVQDTATSVARTIS 269 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPPLK +SA SWLLTTYLD ++RISRGDG S+FVL KEGS L Sbjct: 270 SQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPL 316
>PAP1_ARATH (O81439) Probable plastid-lipid associated protein 1, chloroplast| precursor (AtPap1) (Fibrillin 1) Length = 318 Score = 153 bits (386), Expect = 3e-37 Identities = 73/107 (68%), Positives = 88/107 (82%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFE+G+IGTPQLTDSI +PE E GQ IDL+P+ G+ TS+++ ASSVA+TIS Sbjct: 209 SPKRVQIKFEQGVIGTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTIS 268 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPPLK S++ SWLLTTYLD +LRISRGDG S++VL KEGSSL Sbjct: 269 NQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSSL 315
>PAP1_BRACM (Q94FZ9) Plastid lipid-associated protein 1, chloroplast precursor| Length = 327 Score = 152 bits (385), Expect = 4e-37 Identities = 73/107 (68%), Positives = 88/107 (82%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQ+KFE+G+IGTPQLTDSI +PE E GQ IDL+P+ G+ TS+++ ASSVA+TIS Sbjct: 218 SPKRVQVKFEQGVIGTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVARTIS 277 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPPLK +SA SWLLTTYLD +LRISRGDG S+FVL +EGSSL Sbjct: 278 SQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSSL 324
>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor| (CitPAP) Length = 323 Score = 152 bits (383), Expect = 7e-37 Identities = 74/107 (69%), Positives = 85/107 (79%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFEEG+IGTPQ+TDS+VLPE EF GQ IDLSP GI +S+++ ASSVAKTIS Sbjct: 214 SPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTIS 273 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPPLK + +A SWLLTTYLD +LRISR D S+FV KEGS L Sbjct: 274 SQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPL 320
>PAP2_ARATH (O49629) Probable plastid-lipid associated protein 2, chloroplast| precursor (AtPap2) (Fibrillin 2) Length = 310 Score = 150 bits (380), Expect = 1e-36 Identities = 72/107 (67%), Positives = 88/107 (82%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SPKRVQIKFE+G+IGTPQLTDSI +PE E GQ IDL+P+ G+ TS+++ ASSVA+TIS Sbjct: 201 SPKRVQIKFEQGVIGTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTIS 260 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 QPPLK +++A SWLLTTYLD ++RISRGDG S+FVL KEGS L Sbjct: 261 SQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPL 307
>CHRC_CUCSA (Q96398) Chromoplast-specific carotenoid-associated protein,| chloroplast precursor Length = 322 Score = 145 bits (366), Expect = 6e-35 Identities = 69/106 (65%), Positives = 84/106 (79%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SP RV IKFEEG+IGTPQLTDSIV+P+ +F GQ ID +P +GI +S+++ AS+VAKTIS Sbjct: 213 SPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKTIS 272 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSS 177 QPP+K + SWLLTTYLD +LRISRGDG S+FVL KEGSS Sbjct: 273 SQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSS 318
>PAP3_BRACM (Q94KU5) Plastid lipid-associated protein 3, chloroplast precursor| Length = 360 Score = 111 bits (277), Expect = 1e-24 Identities = 53/107 (49%), Positives = 75/107 (70%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 +P R+++ F+EG + P++ S+ LPE FGQ I+LS L +++ A+++++ IS Sbjct: 252 TPSRIEVSFKEGTLKPPEIKSSVDLPESVGVFGQEINLSFLKQSLNPLQDVAANISRAIS 311 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 GQPPLK+PF SWLLTTYLD +LRISRGDG +FVL +EGSSL Sbjct: 312 GQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDG-GLFVLAREGSSL 357
>PG1_PEA (Q9ZP40) Plastoglobulin 1, chloroplast precursor| Length = 358 Score = 110 bits (276), Expect = 2e-24 Identities = 54/107 (50%), Positives = 71/107 (66%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SP R+Q+ F+EG + P++ I LPE FGQ + L PL +EN +++++ IS Sbjct: 250 SPTRIQVTFKEGSLQPPEIKSKIDLPENINIFGQQLSLGPLLQSLGPLENVVANISRVIS 309 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 GQ PLKIP E SWL+TTYLD +LRISRGDG +FVL +EGSSL Sbjct: 310 GQSPLKIPIPGERTSSWLITTYLDKDLRISRGDG-GLFVLAREGSSL 355
>PAP3_ARATH (O82291) Probable plastid-lipid associated protein 3, chloroplast| precursor (AtPap3) (Fibrillin 3) Length = 376 Score = 110 bits (274), Expect = 3e-24 Identities = 53/107 (49%), Positives = 73/107 (68%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SP R+++ F+EG + P + S+ LPE FGQ I LS L +++ A+++++ +S Sbjct: 268 SPSRIEVSFKEGTLKPPVIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALS 327 Query: 314 GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 GQPPLK+PF SWLLTTYLD +LRISRGDG +FVL +EGSSL Sbjct: 328 GQPPLKLPFPGNRGSSWLLTTYLDKDLRISRGDG-GLFVLAREGSSL 373
>PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3, chloroplast| precursor Length = 374 Score = 108 bits (271), Expect = 6e-24 Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 1/108 (0%) Frame = -2 Query: 494 SPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAKTIS 315 SP R++++F+EG P+++ S+ LP + + FGQ I L P+ + ++ A +S+A +IS Sbjct: 264 SPSRIEVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGPVQQVLNPLQQAFASIAGSIS 323 Query: 314 GQPPLKIPFRSES-AGSWLLTTYLDAELRISRGDGSSIFVLFKEGSSL 174 GQPPLK+P + A SWLLTTYLD +LRISRGDG +F+L KEGS L Sbjct: 324 GQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDG-GLFILVKEGSPL 370
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 31.6 bits (70), Expect = 1.3 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Frame = +3 Query: 189 LEQHKDAAAISSRDSKLGIKVGCEQPGPSTLAPERYLQWGLTG---DGLGDRGCCVLDRS 359 L+Q +D A SS + E PG P+ L GL GLGDR C +L R Sbjct: 526 LQQEEDTATNSSSE---------EGPGSG---PDSRLSTGLAKHLLSGLGDRLCRLLRRE 573 Query: 360 KYAAQWAQ 383 + A WAQ Sbjct: 574 REALAWAQ 581
>AL2S8_BOVIN (Q58CW6) Amyotrophic lateral sclerosis 2 chromosomal region| candidate gene 8 protein homolog Length = 703 Score = 30.4 bits (67), Expect = 2.9 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Frame = +1 Query: 169 IESELPSLNSTKMLLPSPLEILSSASR*VVSSQDPALSLLKGI------FSGG*PEMVLA 330 + S+L + + L P P ++LSS S S Q + L+G+ S G P ++ Sbjct: 524 VSSKLETNQTRNSLSPEPAQLLSSLS----SFQPKIFTHLQGLQLQPRFTSDGSPALISV 579 Query: 331 TEDAAFSIEVNMPLNGLRSMFCPKNSNFSGSTMESVNCGVPMMPSSNLICTRLGLP 498 + S + L+ +RS+ NS G T + P+ P+S++ T LP Sbjct: 580 NNHPSSS--PSRLLDSVRSVVMNNNSLLLGQT-HCLQTDTPLTPNSSISSTMSNLP 632
>HECD1_HUMAN (Q9ULT8) E3 ubiquitin-protein ligase HECTD1 (HECT domain-containing| protein 1) (E3 ligase for inhibin receptor) (EULIR) Length = 2612 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Frame = -2 Query: 371 SGIFTSIENAASSVAKTISGQPPLKIPFRSE-SAGSWLLTTYLDAELRISRGDGSSIFVL 195 S ++ A V + S QP L P ++ + G+W LT + E+ I DG +L Sbjct: 722 SEFLEKLQRARGQVKPSTSSQPILSAPGPTKLTVGNWSLTCLKEGEIAIHNSDGQQATIL 781
>FAT_DROME (P33450) Cadherin-related tumor suppressor precursor (Protein fat)| Length = 5147 Score = 30.4 bits (67), Expect = 2.9 Identities = 28/104 (26%), Positives = 47/104 (45%) Frame = +1 Query: 184 PSLNSTKMLLPSPLEILSSASR*VVSSQDPALSLLKGIFSGG*PEMVLATEDAAFSIEVN 363 P ++++ +PL LS +S +SSQ P + L I +LAT ++ + + Sbjct: 4823 PPTSASRTHQSTPLARLSPSSE--LSSQQPRILTLHDISGKPLQSALLATTSSSGGVGKD 4880 Query: 364 MPLNGLRSMFCPKNSNFSGSTMESVNCGVPMMPSSNLICTRLGL 495 + N RS+ P S SG + S + P +P T +GL Sbjct: 4881 VHSNSERSLNSPVMSQLSGQS-SSASRQKPGVPQQQAQQTSMGL 4923
>CCS_CAPAN (Q42435) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 498 Score = 30.0 bits (66), Expect = 3.8 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 216 ISSRDSKLGIKVGCEQPGPSTLAPERYLQWGLTGDGLGDRGC 341 ++ + SK GIKV C P P ++ P Y W + LG C Sbjct: 96 LAEQVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDC 137
>FCRL_MOUSE (Q920A9) Fc receptor-like and mucin-like 1 precursor (Fc receptor| homolog expressed in B-cells) (Fc receptor related protein X) (FcRX) (Fc receptor-like protein) Length = 352 Score = 29.6 bits (65), Expect = 5.0 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Frame = -2 Query: 371 SGIFTS----IENAASSVAKTIS---GQPPLKIPFRSESAGSWLLTTYLDAELRISRGDG 213 SGIF S AAS VA T+ P LK SE +T +L + R Sbjct: 154 SGIFRSPGPGSREAASPVAITVQELFAAPVLKALPSSEPQEGGSVTLSCQTKLALQRSAS 213 Query: 212 SSIFVLFKEGSSLSI 168 +F +K+G SLS+ Sbjct: 214 RLLFSFYKDGRSLSV 228
>ATCY_SCHPO (O14022) Probable cation-transporting ATPase C29A4.19c (EC 3.6.3.-)| Length = 1096 Score = 29.3 bits (64), Expect = 6.5 Identities = 18/84 (21%), Positives = 34/84 (40%) Frame = -2 Query: 503 LLGSPKRVQIKFEEGIIGTPQLTDSIVLPEKFEFFGQNIDLSPLSGIFTSIENAASSVAK 324 ++G+P+ V + + + L D +V+ + F ++ P+ GI S Sbjct: 251 IIGAPQPVTVIRNQ--VKQTVLADDLVIGDLLYFSNLDLKTCPVDGILFSSSCLLDESMV 308 Query: 323 TISGQPPLKIPFRSESAGSWLLTT 252 T P K P S SW++ + Sbjct: 309 TGESVPARKFPLEDNSLDSWMIAS 332 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,760,379 Number of Sequences: 219361 Number of extensions: 1499671 Number of successful extensions: 3854 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3778 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3849 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
