>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPRTR 664
           P P +SPP P H +  PS P   HQ   P  R   P  R
Sbjct: 200 PPPTYSPPPPTHVQPTPSPPSRGHQPQPPTHRHAPPTHR 238

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = +2

Query: 500  PCGASFLPRCLIQRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQP 655
            P G SF P       G  P WSP   AHP S PS P        P    + P
Sbjct: 1529 PGGPSFSPSAASDASGMSPSWSP---AHPGSSPSSPGPSMSPYFPASPSVSP 1577

>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 539  RHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPRTRCQS 673
            +H   P  +PP PA P   PS P S  Q P P P  +    + QS
Sbjct: 872  QHPTAPGMTPPQPAAPTQ-PSTPVSSGQTPTPTPGSVPSAAQTQS 915

>NOL3_MOUSE (Q9D1X0) Nucleolar protein 3|
          Length = 220

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +2

Query: 512 SFLPRCLIQRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRP---RQIQPRT 661
           S+ P C      PG  W+P AP+   +CP LP++  Q  +  P     +QPRT
Sbjct: 104 SYDPSC------PG-HWTPEAPSSGTTCPELPRASEQEEVGGPEGSEALQPRT 149

>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP
          Length = 3963

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 554 PRWSPPAP---AHPRSCPSLPQSLHQNPLPRPRQIQPRTRCQSLLLL 685
           PRW+PP P     PR   S+       P+P PR+ + R+ C S +L+
Sbjct: 808 PRWTPPPPPPRVQPRKTKSVKSLPEDKPVPAPRR-KVRSGCGSPVLM 853

>NOL3_RAT (Q62881) Nucleolar protein 3|
          Length = 221

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQ---IQPRT 661
           PG  W+P AP+   +CP LP++  +  +  P     +QPRT
Sbjct: 110 PG-HWTPEAPSSGTTCPGLPRASEEEEIGGPEDSEAVQPRT 149

>FOXM1_HUMAN (Q08050) Forkhead box protein M1 (Forkhead-related protein FKHL16)|
           (Hepatocyte nuclear factor 3 forkhead homolog 11)
           (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix
           factor from INS-1 cells) (M-phase phosphoprotein 2)
           (MPM-2 reactive phosp
          Length = 763

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQ----IQPRTRCQSLLLLIQ 691
           P   W  PAP+         +   Q+P PRP++    ++  TRC S +L+IQ
Sbjct: 483 PLEEWPSPAPSFKEESSHSWEDSSQSPTPRPKKSYSGLRSPTRCVSEMLVIQ 534

>BCAR1_RAT (Q63767) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 968

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 545 GPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQP 655
           GPGP  +PP P      PSLPQ +H  P+P   Q  P
Sbjct: 169 GPGPPATPPQPQ-----PSLPQGVH-TPVPPASQYSP 199

>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
 Frame = +2

Query: 500 PCGASFLPRCLIQRHGPGPRWSPPAPAHP-------RSCPSLPQSLHQNPLP 634
           P GA F P          P+ SPP P+H        R  P LP  L +NPLP
Sbjct: 577 PLGAVFSP----------PQASPPQPSHGLQSCRNLRGSPKLPDFLQRNPLP 618

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 563 SPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPR 658
           SPP P   R  PSLP+    +P PR R   PR
Sbjct: 556 SPPPPPRRRRSPSLPRRRSPSPPPRRRSPSPR 587

>BCAR1_MOUSE (Q61140) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 874

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 545 GPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQP 655
           GPGP  +PP P      PSLPQ +H  P+P   Q  P
Sbjct: 75  GPGPPATPPQPQ-----PSLPQGVHA-PVPPASQYSP 105

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRP 640
           PGP   P AP  P  CPS P      P P P
Sbjct: 73  PGPSSKPVAPPGPSPCPSPPPKPQPKPPPAP 103

>VL96_IRV1 (P22856) L96 protein|
          Length = 867

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 533 IQRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPRTRCQ 670
           I R    PR SPPA       PS+P+S    P  RPR   P  R +
Sbjct: 422 ITRKPKSPRRSPPASVRRSRTPSVPKS----PSARPRSKSPSVRAE 463

>TNFL6_PIG (Q9BEA8) Tumor necrosis factor ligand superfamily member 6 (Fas|
           antigen ligand) (Fas ligand) (CD178 antigen) (CD95L
           protein) [Contains: Tumor necrosis factor ligand
           superfamily member 6, membrane form; Tumor necrosis
           factor ligand superfamily m
          Length = 282

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/63 (36%), Positives = 26/63 (41%)
 Frame = +2

Query: 500 PCGASFLPRCLIQRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPRTRCQSLL 679
           PC AS   R       PG R  PP P  P   P+L  S    PLP P   + R     L 
Sbjct: 31  PCPASVPGR-------PGQRRPPPPPPPPPPPPTLLPSRPLPPLPPPSLKKKRDHNAGLC 83

Query: 680 LLI 688
           LL+
Sbjct: 84  LLV 86

>SYNP2_MOUSE (Q91YE8) Synaptopodin-2 (Myopodin)|
          Length = 1087

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 261 TNHTNTMP-PGRADSEDATKTNQSPELRLLQGQPPLG 368
           T H N++P P +AD+   + T+   ELR++QG+ P G
Sbjct: 232 TVHINSIPAPEKADTSLTSSTSSGRELRVIQGRDPGG 268

>FYB_HUMAN (O15117) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 783

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +2

Query: 566 PPAPAHPRSCPSLPQS-LHQNPLPR--PRQIQP 655
           PP P+HP S P LP S   Q P+P   PR I+P
Sbjct: 394 PPPPSHPASQPPLPASHPSQPPVPSLPPRNIKP 426

>YMFQ_ECOLI (P75982) Hypothetical protein ymfQ in lambdoid prophage e14 region|
           precursor
          Length = 194

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPRT 661
           PGP WS   PA   + PSL + +HQ      R++ PRT
Sbjct: 18  PGPVWSASDPAIAGAAPSLTR-VHQRADALMRELDPRT 54

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 536 QRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQP 655
           Q+  P P+  PP    P   P   Q  HQ P P P++ +P
Sbjct: 66  QQQQPPPQQPPPQQPPPHQQPPPHQPPHQQPPPPPQESKP 105

>CST9_YEAST (Q06032) Chromosome stability protein 9 (Molcular zipper protein 3)|
          Length = 482

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
 Frame = +3

Query: 48  ITSTRTQQMNQLEFIQKTKRSLQTATHAR***HNITTHQGSD*LYNDNTSKATAET---S 218
           +TST TQ  + LE ++ T++   T + +    HN+++H  S  L   ++S +  ++    
Sbjct: 377 LTSTSTQFPSALEKLKITRKRNNTISGSNRITHNLSSHVRSSGLAFSSSSNSLQQSKLPK 436

Query: 219 TAMA*RANKTASATTNH---TNTMPP 287
           + +  R+N T   T  H    N +PP
Sbjct: 437 SNILKRSNSTQQLTNTHLKSDNHLPP 462

>CQ039_HUMAN (Q8IVV7) Protein C17orf39|
          Length = 300

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
 Frame = +2

Query: 500 PC----GASFLPRCLIQRHGPGPRWSPPAPAHPRSCPSLPQSLHQN------PLPRPRQI 649
           PC    G+ + P  L++R   G R S P PA  R   SLP +L  +      PLP P  +
Sbjct: 18  PCSQVPGSRWRPERLLRRQRAGGRPSRPHPARARPGLSLPATLLGSRAAAAVPLPLPPAL 77

Query: 650 QP-------RTRC 667
            P       RT C
Sbjct: 78  APGDPAMPVRTEC 90

>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 539  RHGPGPRWSPPAPAHPRSCPSLP-QSLHQNPLPRPRQIQPRTRCQS 673
            +H   P  +PP PA P   PS P  S  Q P P P  +   T+ QS
Sbjct: 870  QHTTPPGMTPPQPAAPTQ-PSTPVSSSGQTPTPTPGSVPSATQTQS 914

>CWC27_EMENI (Q5AUG9) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)|
          Length = 558

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRP 640
           P P+  P   A P++ P  P+   Q PLP P
Sbjct: 277 PSPKRQPQPSAPPKNRPKTPEPTKQLPLPNP 307

>PLXB1_MOUSE (Q8CJH3) Plexin-B1 precursor|
          Length = 2119

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +2

Query: 545 GPGPRWSPPA---PAHPRSCPSLPQSLHQNPLPRPRQIQPRTRCQSLL 679
           GPGP  SP +   P H +  P  P ++    +P P  + P T  + LL
Sbjct: 739 GPGPILSPTSTESPLHEKPLPPDPPTIPGTTVPAPTGLGPSTTPEDLL 786

>FYB_MOUSE (O35601) FYN-binding protein (FYN-T-binding protein) (FYB-120/130)|
           (p120/p130) (SLP-76-associated phosphoprotein)
           (SLAP-130)
          Length = 819

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +2

Query: 566 PPAPAHPRSCPSLPQSLHQNP----LPRPRQIQP 655
           PP P HP S P LP S   +P    LP PR I+P
Sbjct: 382 PPPPTHPASQPPLPASHPAHPPVPSLP-PRNIKP 414

>SOX9_CANFA (Q7YRJ7) Transcription factor SOX-9|
          Length = 513

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 548 PGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQIQPR 658
           P P+ SP AP  P   P  PQ+    P P+P   QP+
Sbjct: 347 PPPQQSPQAPPQPPQAP--PQAPQAPPQPQPAPPQPQ 381

>NAT6_MOUSE (Q9R123) N-acetyltransferase 6 (EC 2.3.1.-) (Fus-2 protein) (Fusion|
           2 protein)
          Length = 314

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2

Query: 476 RPTC*RS*PCGASFLPRCLIQRHGPGPRWSPPAPAHPRSCPSLPQSLHQNPLPRPRQI 649
           +P C +  PC    L    + R   GP   PP P        LPQSL  +P P P  +
Sbjct: 242 KPPCPQP-PCKEPILAAQAVPRSSKGPPLPPPPP--------LPQSLTASPPPSPEPL 290


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,119,606
Number of Sequences: 219361
Number of extensions: 1533668
Number of successful extensions: 6913
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 6021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6830
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)