>PYRB_MYCLE (Q9CCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 321

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 511 VDGYYLSIEVSADLVLPRAKTVRQLXKRAQVLKGGSFGS--GTTIVYSLTEAEKLLL 347
           VDG+  ++    D  LP A  V  L  +A+ + GG F S    + +Y LTE  + LL
Sbjct: 204 VDGWPATVSCDFDAELPAADAVLMLRVQAERMNGGFFPSVREYSCLYGLTERRQALL 260

>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1183

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +1

Query: 394 PNQNSHP*ALAPFXATGVQSSHGAKQDQHSLRLKGSSHQQIPSLQPAHGGGAG 552
           PN N+HP    PF  TG QS+       H    +    Q  P  Q  H G +G
Sbjct: 452 PNNNTHP---GPFPPTGGQSTAHPPAPAHHHHQQQQQPQPQPQPQQHHHGNSG 501

>MAK5_YEAST (P38112) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-) (Maintenance|
           of killer protein 5)
          Length = 773

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 454 KTVRQLXKRAQVLKGGSFGSGTTIVYSLTEAEKLLLN-TMGNAEPVELNIT 305
           K++  + +   V+   S GSG T+ Y +   EKL+ N +  N +P+ L  T
Sbjct: 200 KSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKNKKPISLIFT 250

>SRB8_SCHPO (Q9P6L8) Suppressor of RNA polymerase B srb8|
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 370 TEAEKLLLNTMGNAEPVELNITGNA*TCSS*LKSIYE 260
           TE++KLLLN MG    VELN + ++   +  ++  YE
Sbjct: 646 TESQKLLLNEMGKLFQVELNFSYDSPDVNLLIEQFYE 682


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,590,838
Number of Sequences: 219361
Number of extensions: 1583145
Number of successful extensions: 3526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3525
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)