ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15d21 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 132 bits (332), Expect = 8e-31 Identities = 77/139 (55%), Positives = 89/139 (64%), Gaps = 13/139 (9%) Frame = -3 Query: 589 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLT 443 MA S+++S + P+S LPSLSR +SF V SG KKIKVDKP + Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 442 V--DXDANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 269 + D++GRK KGVYQFVDKYGANV GYSPIY EEW+ +GD YAGGTTGLLIWAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 268 XXXXXXXXXXLVYNTSALA 212 LVYNTSALA Sbjct: 121 LAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 130 bits (327), Expect = 3e-30 Identities = 74/137 (54%), Positives = 87/137 (63%), Gaps = 11/137 (8%) Frame = -3 Query: 589 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV- 440 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP + + Sbjct: 1 MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 439 -DXDANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 263 DA+GRK KGVYQ+VDKYGANV GYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120 Query: 262 XXXXXXXXLVYNTSALA 212 LVYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 130 bits (327), Expect = 3e-30 Identities = 74/137 (54%), Positives = 87/137 (63%), Gaps = 11/137 (8%) Frame = -3 Query: 589 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV- 440 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP + + Sbjct: 1 MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 439 -DXDANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 263 DA+GRK KGVYQ+VDKYGANV GYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120 Query: 262 XXXXXXXXLVYNTSALA 212 LVYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 125 bits (314), Expect = 9e-29 Identities = 68/117 (58%), Positives = 77/117 (65%), Gaps = 2/117 (1%) Frame = -3 Query: 556 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLTV--DXDANGRKVGKKGVYQFVD 383 A LPSL+R SSF V SG KK+K DKP +++ DA+GRK KGVYQFVD Sbjct: 19 AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78 Query: 382 KYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 KYGANV GYSPIY ++WS SGD Y GGTTGL IWAVT LV+NTSALA Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 120 bits (300), Expect = 4e-27 Identities = 71/139 (51%), Positives = 81/139 (58%), Gaps = 13/139 (9%) Frame = -3 Query: 589 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSGGKKIKVDKPXXXXXXLT 443 MAAS++ S + A LPSL+R SF +V SG KKIK DKP + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60 Query: 442 V--DXDANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 269 + DA+GRK GVY++VDKYGANV GYSPIY EWS SGD Y GG TGL IWAVT Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120 Query: 268 XXXXXXXXXXLVYNTSALA 212 LVYNTSALA Sbjct: 121 LAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 119 bits (298), Expect = 7e-27 Identities = 72/140 (51%), Positives = 84/140 (60%), Gaps = 14/140 (10%) Frame = -3 Query: 589 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPXXXXXXL 446 MAAS++ S + ++ LPSL+R SSF +V SG KKIK DKP + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60 Query: 445 TV--DXDANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAV 272 + DA+GRK GVY+FVDKYGANV GYSPIY +EWS SGD Y GG TGL IWAV Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120 Query: 271 TXXXXXXXXXXLVYNTSALA 212 T LVYNTSALA Sbjct: 121 TLAGILAGGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 108 bits (269), Expect = 2e-23 Identities = 63/137 (45%), Positives = 76/137 (55%), Gaps = 11/137 (8%) Frame = -3 Query: 589 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPXXXXXXLTVD 437 M+A ++ S + P+S P L R S +V KK++ +P + Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 436 X--DANGRKVGKKGVYQFVDKYGANVXGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 263 DA+GR KGVYQF DKYGANV GYSPIYTPEEWS SGD Y GG TGL +WAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120 Query: 262 XXXXXXXXLVYNTSALA 212 LVY+TSALA Sbjct: 121 GILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 33.1 bits (74), Expect = 0.63 Identities = 17/24 (70%), Positives = 17/24 (70%) Frame = -3 Query: 499 SGGKKIKVDKPXXXXXXLTVDXDA 428 SGGKKIKVDKP LTVD DA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,242,558 Number of Sequences: 219361 Number of extensions: 999212 Number of successful extensions: 2578 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2573 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
