Clone Name | rbasd14o18 |
---|---|
Clone Library Name | barley_pub |
>YDE6_SCHPO (Q10440) Hypothetical protein C12B10.06c in chromosome I| Length = 139 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/76 (31%), Positives = 43/76 (56%) Frame = -3 Query: 531 ESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWL 352 E+R ++ L Y+S++RG LE DL+L + + + + +R Q+LD + D+ W Sbjct: 43 ETRDAMLARLKYQSRKRGILETDLLLSNFAKDQIDKYPVSLLREYDQLLDEPDWDILYWC 102 Query: 351 TGQEQPPETVNSNPVF 304 +G+ + PE S+ VF Sbjct: 103 SGEREAPEKWKSSQVF 118
>Y2079_XANAC (Q8PKT3) Hypothetical UPF0350 protein XAC2079| Length = 109 Score = 47.8 bits (112), Expect = 3e-05 Identities = 26/79 (32%), Positives = 42/79 (53%) Frame = -3 Query: 552 AIDLSNDESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLEN 373 A++ DE + L+ L +R + RG ELD + G +++Q +A LQ+LD E+ Sbjct: 23 AVESEMDE--QTLLKKLRWRCR-RGMRELDQLFGRYLDQRWAQAPDAERAVFLQLLDCED 79 Query: 372 PDLWKWLTGQEQPPETVNS 316 LW+W G E P+ N+ Sbjct: 80 DKLWRWFMGYEACPDAANA 98
>Y2306_XANOR (Q5H0G1) Hypothetical UPF0350 protein XOO2306| Length = 107 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = -3 Query: 534 DESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKW 355 DE R + L +R + RG ELD + G +++Q +A LQ+LD E+ LW+W Sbjct: 27 DEQTR--LKKLRWRCR-RGMRELDQLFGRYLDQRWAQAPDAERAVFLQLLDCEDDKLWRW 83 Query: 354 LTGQEQPPETVNS 316 G E P+ N+ Sbjct: 84 FMGYEACPDVANA 96
>Y1541_METCA (Q608F1) Hypothetical UPF0350 protein MCA1541| Length = 83 Score = 43.9 bits (102), Expect = 4e-04 Identities = 24/70 (34%), Positives = 40/70 (57%) Frame = -3 Query: 492 SKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSN 313 S +RG ELD VL +V + D + ++ ++LDL++ DLW+ LTG +P + Sbjct: 10 SCRRGMAELDRVLALYVHGAYQEADVSERQAFERLLDLQDADLWRCLTGLARP-----ED 64 Query: 312 PVFAAIKSKV 283 P AA+ +K+ Sbjct: 65 PALAALAAKL 74
>Y2372_NITEU (Q82SG6) Hypothetical UPF0350 protein NE2372| Length = 77 Score = 42.7 bits (99), Expect = 8e-04 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPP 331 +RG LELD+VL +++ H +DE + +L L + DLW + G + P Sbjct: 12 RRGMLELDIVLQRFIDNHYEQLDEHQLELFEMLLSLSDHDLWNIIIGNTKEP 63
>Y2128_XANCP (Q8P8V6) Hypothetical UPF0350 protein XCC2128| Length = 86 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -3 Query: 516 LVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQ 337 L+ L +R + RG ELD + G ++++ A LQ+LD E+ LW+W G E Sbjct: 10 LLKKLRWRCR-RGMRELDQLFGRYLDRRWAQAPAAERAVFLQLLDCEDDKLWRWFMGYEA 68 Query: 336 PPETVNS 316 P+ N+ Sbjct: 69 CPDADNA 75
>Y1986_XANC8 (Q4UV74) Hypothetical UPF0350 protein XC_1986| Length = 86 Score = 42.7 bits (99), Expect = 8e-04 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -3 Query: 516 LVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQ 337 L+ L +R + RG ELD + G ++++ A LQ+LD E+ LW+W G E Sbjct: 10 LLKKLRWRCR-RGMRELDQLFGRYLDRRWAQAPAAERAVFLQLLDCEDDKLWRWFMGYEA 68 Query: 336 PPETVNS 316 P+ N+ Sbjct: 69 CPDADNA 75
>Y1447_LEGPL (Q5WWK6) Hypothetical UPF0350 protein lpl1447| Length = 79 Score = 42.4 bits (98), Expect = 0.001 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQP 334 +RG LELDLVL ++ + + E +++ +L +P+L+ WL G E+P Sbjct: 14 RRGMLELDLVLQKFIANEIDRLTENQLKAFDNLLTHNDPNLYAWLMGHEEP 64
>Y2582_VIBPA (Q87LM9) Hypothetical UPF0350 protein VP2582| Length = 86 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG LELD+V+ + E+ +++E R + +L+ ++PDL+ W+ G + + N Sbjct: 15 RRGMLELDVVIMPFFEECFDALNEQEQRDFVSLLECDDPDLFTWVMGHGR-----SENLG 69 Query: 306 FAAIKSK-VTDNLSK 265 AA+ K V NLSK Sbjct: 70 HAAMVDKIVAHNLSK 84
>Y2096_VIBF1 (Q5E305) Hypothetical UPF0350 protein VF2096| Length = 86 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG LELD+V+ + ++ + EA ++ + +L+ ++PDL+ W+ G + + N Sbjct: 15 RRGMLELDVVIMPFFDECFEELTEAEQQAFVSLLECDDPDLFTWVMGHGR-----SDNLA 69 Query: 306 FAAIKSKVTD-NLSK 265 A++ K+ + NLSK Sbjct: 70 HASMVDKIVEHNLSK 84
>Y3099_PHOPR (Q6LMR2) Hypothetical UPF0350 protein PBPRA3099| Length = 88 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/87 (27%), Positives = 46/87 (52%) Frame = -3 Query: 543 LSNDESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDL 364 LS+DE R + + +RG LELD+++ + E+ + + + R + +L ++PDL Sbjct: 4 LSSDERAR------LKWACRRGMLELDVIIMPFFEECLDDLPDQEQRDFVSLLTSDDPDL 57 Query: 363 WKWLTGQEQPPETVNSNPVFAAIKSKV 283 + W+ G + + NP AA+ K+ Sbjct: 58 FTWMMGHGR-----SENPAHAAMVDKI 79
>Y1536_LEGPA (Q5X4Y4) Hypothetical UPF0350 protein lpp1536| Length = 79 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/51 (33%), Positives = 30/51 (58%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQP 334 +RG LELDL+L ++ + + E +++ +L +P L+ WL G E+P Sbjct: 14 RRGMLELDLLLQKFIANEIDRLTENQLKAFDNLLTHNDPSLYAWLMGHEEP 64
>Y1557_VIBVU (Q8DC84) Hypothetical UPF0350 protein VV1_1557| Length = 86 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG LELD+V+ + E+ + E R + +L+ ++PDL+ W+ G + + N Sbjct: 15 RRGMLELDVVVMPFFEECFEKLSEQEQRDFVSLLECDDPDLFTWVMGHGR-----SENLG 69 Query: 306 FAAIKSK-VTDNLSK 265 A++ K V NLSK Sbjct: 70 HASMVDKIVAHNLSK 84
>Y1074_XYLFA (Q9PEF4) Hypothetical UPF0350 protein Xf1074| Length = 97 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/58 (36%), Positives = 30/58 (51%) Frame = -3 Query: 513 VNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQE 340 +N L +RS+ RG ELD + ++ EA L+ LD E+ LW+WL G E Sbjct: 22 LNKLRWRSR-RGMRELDHLFDRYLSHRWAQASEAERGVFLRFLDCEDDKLWRWLMGYE 78
>Y2841_VIBVY (Q7MHM8) Hypothetical UPF0350 protein VV2841| Length = 86 Score = 38.9 bits (89), Expect = 0.012 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG LELD+V+ + E+ + E R + +L+ ++PDL+ W+ G + + N Sbjct: 15 RRGMLELDVVVMPFFEECFDKLSEQEQRDFVSLLECDDPDLFTWVMGHGR-----SENLG 69 Query: 306 FAAIKSK-VTDNLSK 265 A++ K V NLSK Sbjct: 70 HASMVDKIVAHNLSK 84
>EMI5_YEAST (Q08230) Early meiotic induction protein 5, mitochondrial precursor| Length = 162 Score = 38.9 bits (89), Expect = 0.012 Identities = 19/62 (30%), Positives = 37/62 (59%) Frame = -3 Query: 534 DESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKW 355 D+ R RL+ Y+S++RG LE DL+L + ++++ M+E + +L+ + D++ W Sbjct: 63 DKKRARLI----YQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYW 118 Query: 354 LT 349 T Sbjct: 119 AT 120
>Y870_COXBU (Q83D70) Hypothetical UPF0350 protein CBU0870| Length = 82 Score = 38.5 bits (88), Expect = 0.016 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQP 334 +RG LELD++L + E+ RS+ + Q+LD +P L+ WL G P Sbjct: 15 RRGMLELDILLERFYEEKFRSLTKNEKEIFNQLLDQPDPLLYDWLLGHVTP 65
>Y354_XYLFT (Q87EF7) Hypothetical UPF0350 protein PD0354| Length = 97 Score = 38.1 bits (87), Expect = 0.021 Identities = 21/58 (36%), Positives = 30/58 (51%) Frame = -3 Query: 513 VNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQE 340 +N L +RS+ RG ELD + ++ EA L+ LD E+ LW+WL G E Sbjct: 22 LNKLRWRSR-RGMRELDHLFDRYLSHCWAQASEAERGVFLRFLDCEDDKLWRWLMGYE 78
>Y1151_FRATT (Q5NFS4) Hypothetical UPF0350 protein FTT1151c| Length = 95 Score = 38.1 bits (87), Expect = 0.021 Identities = 20/62 (32%), Positives = 34/62 (54%) Frame = -3 Query: 513 VNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQP 334 V+ + Y S +RG LELD++L ++ D AN + ++ L E+ D++ WL P Sbjct: 13 VDKIKY-SARRGMLELDIILAPYLNNCYMHEDLANKKLFVEFLTSEDSDMFDWLFKGVTP 71 Query: 333 PE 328 P+ Sbjct: 72 PQ 73
>Y759_ERWCT (Q6D960) Hypothetical UPF0350 protein ECA0759| Length = 88 Score = 37.7 bits (86), Expect = 0.027 Identities = 14/53 (26%), Positives = 33/53 (62%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E ++++++ R+ +++L ++PDL+ WL +P + Sbjct: 14 RRGMRELDIAIMPFFEHDYDTLNDSDKRAFVRLLQSDDPDLFNWLMNHGEPKD 66
>Y2471_VIBCH (Q9KPA2) Hypothetical UPF0350 protein VC2471| Length = 86 Score = 37.7 bits (86), Expect = 0.027 Identities = 22/74 (29%), Positives = 40/74 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG LELD+V+ + E+ S+ E+ + +L+ ++PDL+ W+ G + + + Sbjct: 15 RRGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGR----CENLGL 70 Query: 306 FAAIKSKVTDNLSK 265 A + V NLSK Sbjct: 71 AAMVDKIVAHNLSK 84
>Y065_HAEDU (Q7VPK3) Hypothetical UPF0350 protein HD_0065| Length = 82 Score = 37.4 bits (85), Expect = 0.035 Identities = 18/68 (26%), Positives = 38/68 (55%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPETVNSNPV 307 +RG ELD ++ + +Q+ + EA R+ + +L +P+L++W+ Q P TV + + Sbjct: 14 RRGMRELDKMIMPFYQQYFEQLSEAEQRTFVTMLSYTDPELFRWVMHQ-SPAPTVAISAL 72 Query: 306 FAAIKSKV 283 I++ + Sbjct: 73 IERIRASI 80
>Y1339_SHEON (Q8EH90) Hypothetical UPF0350 protein SO1339| Length = 82 Score = 37.0 bits (84), Expect = 0.046 Identities = 15/53 (28%), Positives = 32/53 (60%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG LELD++ +V+ + + + + +++L+ E+P+L+ W G E P+ Sbjct: 14 RRGMLELDVLFQPFVDNVYQDLSDEDKVLFIRLLECEDPELFAWFMGHEVCPD 66
>YGFY_SHIFL (Q83JU2) UPF0350 protein ygfY| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L+ ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPAD 66
>YGFY_ECOLI (P64559) UPF0350 protein ygfY| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L+ ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPAD 66
>YGFY_ECOL6 (P64560) UPF0350 protein ygfY| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L+ ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPAD 66
>YGFY_ECO57 (P64561) UPF0350 protein ygfY| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L+ ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPAD 66
>Y897_YERPE (Q8ZHJ5) Hypothetical UPF0350 protein YPO0897/y3282/YP3594| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 14/54 (25%), Positives = 32/54 (59%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPET 325 +RG ELD+ + + E S+ + ++ +++L+ ++PDL+ WL +P ++ Sbjct: 14 RRGMRELDISIMPFFEYEYDSLSDNEKQAFIRLLECDDPDLFNWLMNHGEPQDS 67
>Y3173_YERPS (Q666S3) Hypothetical UPF0350 protein YPTB3173| Length = 88 Score = 36.6 bits (83), Expect = 0.061 Identities = 14/54 (25%), Positives = 32/54 (59%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPET 325 +RG ELD+ + + E S+ + ++ +++L+ ++PDL+ WL +P ++ Sbjct: 14 RRGMRELDISIMPFFEYEYDSLSDNEKQAFIRLLECDDPDLFNWLMNHGEPQDS 67
>YGFY_SALTY (Q7CPV1) UPF0350 protein ygfY| Length = 88 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPAD 66
>YGFY_SALTI (Q8XEN6) UPF0350 protein ygfY| Length = 88 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPAD 66
>YGFY_SALPA (Q5PJF5) UPF0350 protein ygfY| Length = 88 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPAD 66
>YGFY_SALCH (Q57K69) UPF0350 protein ygfY| Length = 88 Score = 35.4 bits (80), Expect = 0.13 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + E S+ + R +++L ++PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFEHEYDSLSDEEKRIFVRLLQSDDPDLFNWLMNHGKPAD 66
>Y760_PSEAE (Q9I5G9) Hypothetical UPF0350 protein PA0760| Length = 84 Score = 34.7 bits (78), Expect = 0.23 Identities = 15/58 (25%), Positives = 33/58 (56%) Frame = -3 Query: 501 MYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +Y +RG LELD++L +V++ +D + ++L+ E+ D++ W + +P + Sbjct: 10 LYWHSRRGMLELDVLLVPFVQEVYPGLDAEDQARFRKLLECEDQDMFGWFMQRGEPED 67
>Y819_IDILO (Q5R0Z7) Hypothetical UPF0350 protein IL0819| Length = 90 Score = 34.3 bits (77), Expect = 0.30 Identities = 14/50 (28%), Positives = 28/50 (56%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQ 337 +RG LELD++ +V+Q + E +++ ++PDL+ W G ++ Sbjct: 22 RRGMLELDVLFEPFVDQAYDELSEEQKAVFRRLITCDDPDLFAWFMGHQK 71
>DPOL_HPBDC (P30028) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 787 Score = 34.3 bits (77), Expect = 0.30 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = -3 Query: 396 LQILDLENPDLWKWLTGQEQPPETVNSNPVFAAIKSKVTDNLSKHSS 256 LQ+L+ WK+LT + P++++ PV A +K+K DN+ +H S Sbjct: 119 LQVLNECPSRNWKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHES 165
>Y1736_PSYAR (Q4FQX4) Hypothetical UPF0350 protein Psyc_1736| Length = 93 Score = 33.9 bits (76), Expect = 0.39 Identities = 17/59 (28%), Positives = 33/59 (55%) Frame = -3 Query: 504 LMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 ++Y+++ RG ELD ++++ + + A S Q+L E+PDL + T Q +P + Sbjct: 16 IIYQAR-RGLKELDFYFEPYIKELYLTAEAAEQESFAQMLTHEDPDLLDYFTNQSRPED 73
>HHEX_MOUSE (P43120) Homeobox protein PRH (Hematopoietically expressed| homeobox) (Homeobox protein HEX) Length = 271 Score = 33.5 bits (75), Expect = 0.51 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +3 Query: 144 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSPST 293 N+ F L++ +RT V++ HP S AL + G S G YP P T Sbjct: 56 NSSFTSLVSSYRTPVYEPTPVHPAFSHHPAAALAAAYGPSGFGGPLYPFPRT 107
>Y3555_PHOLL (Q7N1C1) Hypothetical UPF0350 protein plu3555| Length = 88 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/53 (26%), Positives = 29/53 (54%) Frame = -3 Query: 486 QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 +RG ELD+ + + + S+ + + R +++L +PDL+ WL +P + Sbjct: 14 RRGMRELDISIMPFFKYEYDSLSDDDKRLFIRLLACADPDLFNWLMNHGRPED 66
>Y1445_PSEF5 (Q4KGR0) Hypothetical UPF0350 protein PFL_1445| Length = 84 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Frame = -3 Query: 501 MYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWL--TGQEQPPE 328 +Y +RG LELD++L +V + ++E + ++L+ E+ D++ W + + PE Sbjct: 10 LYWHSRRGMLELDVLLVPFVREVYPHLNETDRECYRKLLECEDQDMFGWFMERSESEDPE 69
>Y1424_PSEPK (Q88MZ4) Hypothetical UPF0350 protein PP1424| Length = 84 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Frame = -3 Query: 513 VNSLMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWL---TGQ 343 +N L + S+ RG LELD++L + ++ +++E + +++L E+ D++ W T Sbjct: 7 LNRLFWHSR-RGMLELDVLLVPFTQEVYPTLNETDRELYVRLLSCEDQDMFGWFMERTES 65 Query: 342 EQP 334 E P Sbjct: 66 EDP 68
>DPOL_HPBDW (P17193) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 32.3 bits (72), Expect = 1.1 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -3 Query: 363 WKWLTGQEQPPETVNSNPVFAAIKSKVTDNLSKHSS 256 WK+LT + P++++ PV A +K+K DN+ +H + Sbjct: 130 WKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHEA 165
>DPOL_HPBDB (P17192) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 788 Score = 32.3 bits (72), Expect = 1.1 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -3 Query: 363 WKWLTGQEQPPETVNSNPVFAAIKSKVTDNLSKHSS 256 WK+LT + P++++ PV A +K+K DN+ +H + Sbjct: 130 WKYLTPAKFWPKSISYFPVQAGVKAKYPDNVMQHEA 165
>HHEX_HUMAN (Q03014) Homeobox protein PRH (Hematopoietically expressed| homeobox) (Homeobox protein HEX) Length = 270 Score = 32.0 bits (71), Expect = 1.5 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +3 Query: 144 NNGFKHLITGFRTWVHQDPSCHPTLSPKADQALTGSLGKSACSG--YPSPST 293 N+ F L++ +RT V++ HP S + AL + G G YP P T Sbjct: 55 NSSFTSLVSPYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRT 106
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 32.0 bits (71), Expect = 1.5 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = -2 Query: 475 PGAGPGA-RDLGGAARPLHGRGQH 407 PG+GPGA GG A P HGR +H Sbjct: 419 PGSGPGALAKTGGTASPKHGRAEH 442
>Y4131_COLP3 (Q47WN6) Hypothetical UPF0350 protein CPS_4131| Length = 91 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Frame = -3 Query: 543 LSNDESRRRLVNSLMYRSK---QRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLEN 373 ++N+E+ L+ R K +RG LELD++ +V++ + + + ++L ++ Sbjct: 1 MTNNENSTNLLKVNKARLKWACRRGMLELDVLFIPFVDEAYDELSTKDQFTFERLLTGQD 60 Query: 372 PDLWKWLTGQEQPPET 325 P+L+ W G E +T Sbjct: 61 PELFAWFMGHEVCEDT 76
>DPOL_HPBDU (P03162) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 836 Score = 31.2 bits (69), Expect = 2.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 363 WKWLTGQEQPPETVNSNPVFAAIKSKVTDNLSKHSS 256 WK+LT + P++++ PV +K K DN+ +H S Sbjct: 180 WKYLTPAKFWPKSISYFPVQVGVKPKYPDNVMQHES 215
>Y3189_ACIAD (Q6F7U1) Hypothetical UPF0350 protein ACIAD3189| Length = 85 Score = 30.8 bits (68), Expect = 3.3 Identities = 14/59 (23%), Positives = 31/59 (52%) Frame = -3 Query: 504 LMYRSKQRGFLELDLVLGTWVEQHVRSMDEANIRSLLQILDLENPDLWKWLTGQEQPPE 328 ++YR++ RG E+D+ +V+ + + + +++ E+PDL W +PP+ Sbjct: 12 VIYRAR-RGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQ 69
>GUAA_LEPIN (Q8F4F4) Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 603 Score = 30.4 bits (67), Expect = 4.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 546 DLSNDESRRRLVNSLMYRSKQRGFLELDLVLGTWV 442 D S+ E +R++V +L ++ R +LDL G W+ Sbjct: 289 DKSDPEEKRKIVGNLFLEARDRAVKDLDLEYGDWL 323
>GUAA_LEPIC (Q72RB7) Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 603 Score = 30.4 bits (67), Expect = 4.3 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -3 Query: 546 DLSNDESRRRLVNSLMYRSKQRGFLELDLVLGTWV 442 D S+ E +R++V +L ++ R +LDL G W+ Sbjct: 289 DKSDPEEKRKIVGNLFLEARDRAVKDLDLEYGDWL 323
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%) Frame = -1 Query: 485 RGASWSWTWCSGPGWSST---SAPWTRPTSAPCSRSST 381 R +S W WC PGWS + WT +S P S +T Sbjct: 371 RASSRRW-WCRAPGWSRSRRRRRGWTGSSSRPVSSGAT 407
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 30.0 bits (66), Expect = 5.7 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = -2 Query: 475 PGAGPGARD-LGGAARPLHGRGQH 407 PG+GPGA GG P HGR +H Sbjct: 421 PGSGPGALPKTGGTTSPKHGRAEH 444
>GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)| Length = 1502 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Frame = +1 Query: 316 RVYSLWWLLLTSKPFPQIWVLEVEDL---EQGADVGLVHGADVLLHPGPEHQVQLQEAPL 486 ++Y +WW L P +WVL E +Q D+ PGP ++ + L Sbjct: 1283 QLYEVWWSLCGPGPESSVWVLSAESTVSDKQSKPEDSASAEDMEQPPGPGPRLSAESERL 1342 Query: 487 LA 492 L+ Sbjct: 1343 LS 1344
>YDY2_SCHPO (O13683) Hypothetical protein C11E3.02c in chromosome I| Length = 1237 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/90 (27%), Positives = 37/90 (41%) Frame = +1 Query: 193 KTPLVIPPSHPRLTRR*PGLWGRVLAQVIRHLRLNGSKYRIRVYSLWWLLLTSKPFPQIW 372 KTP +PP R+ L QV + + IR S++W +L S Sbjct: 333 KTPTYVPPIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIRECSIYWRILPSTRC---- 388 Query: 373 VLEVEDLEQGADVGLVHGADVLLHPGPEHQ 462 L ++ + GL+ ADVL H G H+ Sbjct: 389 ALSMDFAREHLQKGLITSADVLTHFGELHK 418
>ARP4_ASHGO (Q754G5) Actin-like protein ARP4| Length = 479 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%) Frame = +1 Query: 244 PGLWGRVLAQVIRHL------RLNGSKYRIRVYSLWW---LLLTSKPFPQIWVLEVEDLE 396 PGL R+ A++ R L L + R R Y W +L + F Q+WV + E E Sbjct: 408 PGLMDRISAELNRSLPALKFRMLTSGQLRERQYQGWLGGSILASLGTFHQLWVGKQEYAE 467 Query: 397 QGAD 408 GAD Sbjct: 468 VGAD 471
>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter| Length = 529 Score = 29.3 bits (64), Expect = 9.7 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 174 FRTWVHQDPSCHPTLSPKADQALTGSL-GKSACSGYPSP 287 F +VH+DPS HPT+ + + + SL G P P Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIP 286
>PURK_BACSU (P12045) Phosphoribosylaminoimidazole carboxylase ATPase subunit| (EC 4.1.1.21) (AIR carboxylase) (AIRC) Length = 379 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -3 Query: 594 LSVTASTQQNTAGT-AIDLSNDESRRRLVNSLMYRSKQRGFLELDLVLGTWVEQHVRSM 421 L+V + + N G A+++ E LVN L R G LDL + EQH+R++ Sbjct: 238 LAVKLADELNLVGPLAVEMFLTEDGELLVNELAPRPHNSGHYTLDLCETSQFEQHIRAV 296
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 29.3 bits (64), Expect = 9.7 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Frame = -2 Query: 475 PGAGPGA-RDLGGAARPLHGRGQH 407 PG+GPGA GG P HGR H Sbjct: 418 PGSGPGALAKTGGTPSPKHGRADH 441
>DSPP_RAT (Q62598) Dentin sialophosphoprotein precursor [Contains: Dentin| phosphoprotein (Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)] Length = 687 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +1 Query: 304 KYRIRVYSLWWLLLTSKPFPQIWVLEVEDLEQGADVGLVHGADVLLHPGPEHQVQL 471 K +I +Y W + P PQ+ LE + +E+ ADV L HPG Q +L Sbjct: 2 KTKIIIYICIWATAWAIPVPQLVPLERDIVEKSADV------PFLAHPGTAAQNEL 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,900,553 Number of Sequences: 219361 Number of extensions: 1653428 Number of successful extensions: 6136 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 5664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6130 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)