ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd14o15 |
|---|---|
| Clone Library Name | barley_pub |
>PLZ12_LUPPO (P16148) Protein PPLZ12| Length = 184 Score = 189 bits (479), Expect = 8e-48 Identities = 91/138 (65%), Positives = 116/138 (84%) Frame = -2 Query: 589 IVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAGVG 410 I L+VDI PD+ V+RAMNEINAA RM+LA+ K EAEKILQ+KRAE EAE+KYL GVG Sbjct: 32 IEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVG 91 Query: 409 IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGASSKSSAVFIPH 230 +ARQRQAI DGLR+++L FS V GTS+K+VMD++++TQYFDT+KD+G SSK++ VFIPH Sbjct: 92 VARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPH 151 Query: 229 GPGAVKDIASQIRDGQLQ 176 GPG V+DI QIR+G ++ Sbjct: 152 GPGHVRDIGEQIRNGLME 169
>Y692_METTH (O26788) Hypothetical protein MTH692| Length = 318 Score = 44.3 bits (103), Expect = 3e-04 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 12/152 (7%) Frame = -2 Query: 592 QIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAGV 413 ++V+ I IEP + AM++ A RM+ AA +AE K +IKRAEG+ ++ L Sbjct: 151 RVVRVEIQRIEPPGDIVEAMSKQMKAERMKRAAILEAEGYKQSEIKRAEGDKQAAILEAE 210 Query: 412 GIARQRQAIVDGLRDSVLAFSEN--------VPGTSSKDVMDMVLVTQYFDTMKDIGASS 257 G A + + D + +A +E D + ++ +Y + ++ + A Sbjct: 211 GKAEAIKKVADANKYREIAIAEGQAKAILSVFRAMHEGDPTNDIIALKYLEALEKV-ADG 269 Query: 256 KSSAVFIPHGP----GAVKDIASQIRDGQLQG 173 +++ + +P G++ I+ + D + +G Sbjct: 270 RATKILLPVEATGILGSIAGISEMLSDPEDKG 301
>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK| Length = 305 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 13/149 (8%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 I++ + I D+ P + +MN A R + A +AE + +I +AEGE +S+ L Sbjct: 152 IKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKA 211 Query: 415 VG---------IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGA 263 G AR+R A + ++ SE + + ++ + +Y + ++ IG+ Sbjct: 212 EGERQSAFLQAEARERSAEAEARATKMV--SEAI-ASGDIQAVNYFVAQKYTEALQQIGS 268 Query: 262 SSKSSAVFIPHGP----GAVKDIASQIRD 188 SS S V +P G++ IA ++D Sbjct: 269 SSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK| Length = 305 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 13/149 (8%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 I++ + I D+ P + +MN A R + A +AE + +I +AEGE +S+ L Sbjct: 152 IKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKA 211 Query: 415 VG---------IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGA 263 G AR+R A + ++ SE + + ++ + +Y + ++ IG+ Sbjct: 212 EGERQSAFLQAEARERSAEAEARATKMV--SEAI-ASGDIQAVNYFVAQKYTEALQQIGS 268 Query: 262 SSKSSAVFIPHGP----GAVKDIASQIRD 188 SS S V +P G++ IA ++D Sbjct: 269 SSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK| Length = 305 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 13/149 (8%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 I++ + I D+ P + +MN A R + A +AE + +I +AEGE +S+ L Sbjct: 152 IKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKA 211 Query: 415 VG---------IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGA 263 G AR+R A + ++ SE + + ++ + +Y + ++ IG+ Sbjct: 212 EGERQSAFLQAEARERSAEAEARATKMV--SEAI-ASGDIQAVNYFVAQKYTEALQQIGS 268 Query: 262 SSKSSAVFIPHGP----GAVKDIASQIRD 188 SS S V +P G++ IA ++D Sbjct: 269 SSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK| Length = 305 Score = 42.0 bits (97), Expect = 0.002 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 13/149 (8%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 I++ + I D+ P + +MN A R + A +AE + +I +AEGE +S+ L Sbjct: 152 IKVTRIEIRDVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKA 211 Query: 415 VG---------IARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGA 263 G AR+R A + ++ SE + + ++ + +Y + ++ IG+ Sbjct: 212 EGERQSAFLQAEARERSAEAEARATKMV--SEAI-ASGDIQAVNYFVAQKYTEALQQIGS 268 Query: 262 SSKSSAVFIPHGP----GAVKDIASQIRD 188 SS S V +P G++ IA ++D Sbjct: 269 SSNSKVVMMPLEASSLMGSIAGIAELVKD 297
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 32.3 bits (72), Expect = 1.3 Identities = 18/43 (41%), Positives = 21/43 (48%) Frame = +2 Query: 386 DRLTLPCNTHTSQVL*FCLAFSPLDLQNLFCFCFLSGCQPHPS 514 + LTLP T + L L+ P DL FC LS C P PS Sbjct: 600 NELTLPFKNPTPEALSDALSPLPKDLDMRFCLLKLSTCAPFPS 642
>OPPD_BACSU (P24136) Oligopeptide transport ATP-binding protein oppD| Length = 358 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/73 (27%), Positives = 34/73 (46%) Frame = -2 Query: 412 GIARQRQAIVDGLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDTMKDIGASSKSSAVFIP 233 G RQR I L + + P T+ +D+ + Q + MKD+ +S +FI Sbjct: 161 GGMRQRVVIAMALAANPKLLIADEPTTA----LDVTIQAQILELMKDLQKKIDTSIIFIT 216 Query: 232 HGPGAVKDIASQI 194 H G V ++A ++ Sbjct: 217 HDLGVVANVADRV 229
>STML2_HUMAN (Q9UJZ1) Stomatin-like protein 2 (SLP-2) (EPB72-like 2)| Length = 356 Score = 31.2 bits (69), Expect = 2.9 Identities = 25/110 (22%), Positives = 47/110 (42%) Frame = -2 Query: 526 INAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAGVGIARQRQAIVDGLRDSVLAFSE 347 IN A + A +EAEK QI +A GEA + + + +A + +R A ++ Sbjct: 215 INVAEGKKQAQILASEAEKAEQINQAAGEASA-------VLAKAKAKAEAIRILAAALTQ 267 Query: 346 NVPGTSSKDVMDMVLVTQYFDTMKDIGASSKSSAVFIPHGPGAVKDIASQ 197 + + + + QY + + S+ + +P PG V + +Q Sbjct: 268 H----NGDAAASLTVAEQYVSAFSKL--AKDSNTILLPSNPGDVTSMVAQ 311
>DHSA_BOVIN (P31039) Succinate dehydrogenase [ubiquinone] flavoprotein subunit,| mitochondrial precursor (EC 1.3.5.1) (Fp) (Flavoprotein subunit of complex II) Length = 665 Score = 30.8 bits (68), Expect = 3.8 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -1 Query: 233 SRAWRRQRHRFTDTRWSAPGQDGLRS 156 SR WR +R T T+WSA Q G RS Sbjct: 8 SRLWRARRLALTCTKWSAAWQTGTRS 33
>PHLPL_MOUSE (Q8BXA7) PH domain leucine-rich repeat protein phosphatase-like (EC| 3.1.3.16) Length = 1320 Score = 30.8 bits (68), Expect = 3.8 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Frame = +3 Query: 198 CEAMSLTAPGP*GMNTAEDLEDAP-------ISFIVSKYCVTKTISMTSLEEVPGTFSEK 356 CE LT PGP G + L+D P S I S++ + S S EV T S++ Sbjct: 1039 CEMNGLTLPGPVGFASTAALKDTPKPTTPSSSSGIASEFSSEMSTSEVS-SEVGSTASDE 1097 Query: 357 ARTLSLRPSTI---A*RCLAIPTPARYFDSASPSALLICRIFSAS 482 T+ L S + RC P + PS C FS++ Sbjct: 1098 HNTVGLEASLLPRPERRCSLHPASSAGVFQRQPS----CATFSSN 1138
>SYH_BLOFL (Q7VRR8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 433 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -1 Query: 323 GCHGYGFGDAIFRHNE-RYWSIFQVFSSVHPSRAWRRQRHRFTDTRWSAPGQD 168 GC G +++F H E R W + +F P + RQ H+F+ + G D Sbjct: 93 GCVRAGIENSLFYHQEPRLWYMGPMFRRERPQKGRYRQFHQFSAEAFGCVGPD 145
>PHLPL_HUMAN (Q6ZVD8) PH domain leucine-rich repeat protein phosphatase-like (EC| 3.1.3.16) Length = 1323 Score = 30.0 bits (66), Expect = 6.6 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 10/95 (10%) Frame = +3 Query: 198 CEAMSLTAPGP*GMNTAEDLEDAP-------ISFIVSKYCVTKTISMTSLEEVPGTFSEK 356 CE LT PGP G + ++DAP S I S++ + S S EV T S++ Sbjct: 1042 CEMNGLTLPGPVGFASTTTIKDAPKPATPSSSSGIASEFSSEMSTSEVS-SEVGSTASDE 1100 Query: 357 ARTLSLRPSTI---A*RCLAIPTPARYFDSASPSA 452 L + + RC PTP PS+ Sbjct: 1101 HNAGGLDTALLPRPERRCSLHPTPTSGLFQRQPSS 1135
>YUAG_BACSU (O32076) Hypothetical protein yuaG| Length = 509 Score = 30.0 bits (66), Expect = 6.6 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Frame = -2 Query: 568 DIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAE-------GEAESKYLAGVG 410 + + + +KRA + +A ATE AEAEKI Q+K AE +A + + Sbjct: 217 EADKETRIKRAEADKDAKKSELERATEIAEAEKINQLKMAEFRREQDTAKANADQAYDLE 276 Query: 409 IARQRQAIVD 380 AR RQ + + Sbjct: 277 TARARQQVTE 286
>RF1_THET8 (P96077) Peptide chain release factor 1 (RF-1)| Length = 354 Score = 30.0 bits (66), Expect = 6.6 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Frame = -2 Query: 616 MGGVLGLIQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEA 437 MG V+GLI+ + ++ D+E E + L KAE E +L K A + Sbjct: 41 MGEVIGLIREYRKVLEDLEQAE---------SLLDDPELKEMAKAEREALLARKEALEKE 91 Query: 436 ESKYLAGVGIARQRQAIVD-----GLRDSVLAFSENVPGTSSKDVMDMVLVTQYFDT-MK 275 ++L +R AIV+ G ++ L F+ ++ + +M T+ D+ Sbjct: 92 LERHLLPKDPMDERDAIVEIRAGTGGEEAAL-FARDLFNMYLRFAEEMGFETEVLDSHPT 150 Query: 274 DIGASSKSSAVFIPHGPGA 218 D+G SK VF GPGA Sbjct: 151 DLGGFSK--VVFEVRGPGA 167
>Y1524_MYCBO (P63694) Hypothetical protein Mb1524| Length = 381 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/62 (25%), Positives = 33/62 (53%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 +++ + + I+P ++ +M + A R + A AE + IK+AEG+ +++ LA Sbjct: 158 LRVARVELRSIDPPPSIQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQAQILAA 217 Query: 415 VG 410 G Sbjct: 218 EG 219
>Y1488_MYCTU (P63693) Hypothetical protein Rv1488/MT1533.2| Length = 381 Score = 30.0 bits (66), Expect = 6.6 Identities = 16/62 (25%), Positives = 33/62 (53%) Frame = -2 Query: 595 IQIVQTLIVDIEPDEHVKRAMNEINAAARMRLAATEKAEAEKILQIKRAEGEAESKYLAG 416 +++ + + I+P ++ +M + A R + A AE + IK+AEG+ +++ LA Sbjct: 158 LRVARVELRSIDPPPSIQASMEKQMKADREKRAMILTAEGTREAAIKQAEGQKQAQILAA 217 Query: 415 VG 410 G Sbjct: 218 EG 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,456,132 Number of Sequences: 219361 Number of extensions: 2162342 Number of successful extensions: 6426 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6179 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6412 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
