ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14o12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLC2B_HUMAN (Q8NEV8) Slp homolog lacking C2 domains b (Exophilin-5) 32 2.5
2SYR_PSEAE (Q9HUC8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 31 3.3
3SECR_PIG (P63298) Secretin precursor (Fragment) 30 5.6
4NLTPD_RICCO (Q43119) Nonspecific lipid-transfer protein D, cotyl... 30 9.6

>SLC2B_HUMAN (Q8NEV8) Slp homolog lacking C2 domains b (Exophilin-5)|
          Length = 1989

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 101  SLGLEQELDTRGENRKNKYVQQDEENCNRENPP 199
            SLG  +E D  G+N+KN+++    EN  R + P
Sbjct: 917  SLGEREEKDNAGKNQKNQFIVSHSENQERNDSP 949



to top

>SYR_PSEAE (Q9HUC8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 587

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +2

Query: 455 KNLGQINTREQITGKLIIH*NRQPRHLAHDSRHLAHAL*KIIDVTSCAMEKINVVLSL*C 634
           + LGQ   REQ+ GK+++    QP+ LA     LA  L +  D+ +      NV L    
Sbjct: 483 RKLGQ--GREQLGGKIVLE---QPQELA-----LAAQLAQFGDLIN------NVALKGVP 526

Query: 635 QNICFYLIEKSSIFFQYIKHCTV 703
             +C YL E + +F  + +HC +
Sbjct: 527 HLLCAYLYELAGLFSSFYEHCPI 549



to top

>SECR_PIG (P63298) Secretin precursor (Fragment)|
          Length = 131

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 22/80 (27%), Positives = 39/80 (48%)
 Frame = -1

Query: 691 LNVLEENARLLNQIEANILTSQAQNNIDLFHRTRSNINNLLQSMSQMPGIMSKMPRLPVS 512
           L+ L ++ARL   ++  +     Q+  +    T+S  + L Q  S MP + + MP  P  
Sbjct: 39  LSRLRDSARLQRLLQGLVGKRSQQDPENNTAWTKSGEDRLCQLWSHMPALQAWMPMKP-P 97

Query: 511 VDDKLAGYLLPGVNLAQVLS 452
           VD   + +L PG+    ++S
Sbjct: 98  VDQAWSPWLPPGLRAGALVS 117



to top

>NLTPD_RICCO (Q43119) Nonspecific lipid-transfer protein D, cotyledon-specific|
           isoform precursor (NS-LTP D)
          Length = 116

 Score = 29.6 bits (65), Expect = 9.6
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -2

Query: 600 IAQEVTSIIFYKA*AKCLES*ARCLGCLFQWMISLPVICSLVLIWP 463
           +AQ V S+   KA  +CL++ ++ LG   Q++  +P  C++ + +P
Sbjct: 60  LAQTVKSVDDKKAICRCLKASSKSLGIKDQFLSKIPAACNIKVGFP 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,470,424
Number of Sequences: 219361
Number of extensions: 2011407
Number of successful extensions: 5189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5187
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top