ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15d11 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 57.4 bits (137), Expect = 9e-09 Identities = 23/36 (63%), Positives = 31/36 (86%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 213 HRY + HEC+FD++ A +AIAKANPVVKA+K+D+I Sbjct: 133 HRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 55.1 bits (131), Expect = 4e-08 Identities = 22/36 (61%), Positives = 29/36 (80%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 213 HRY +KHEC FD++ DAIAKANP+VKA+K+ +I Sbjct: 140 HRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 52.4 bits (124), Expect = 3e-07 Identities = 21/33 (63%), Positives = 28/33 (84%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 222 HRYSD+H C +DY++AA DAIA+ NPVV+A K+ Sbjct: 129 HRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 213 HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 178 HRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 50.8 bits (120), Expect = 8e-07 Identities = 22/36 (61%), Positives = 26/36 (72%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 213 HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 178 HRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 46.2 bits (108), Expect = 2e-05 Identities = 20/36 (55%), Positives = 26/36 (72%) Frame = -2 Query: 320 HRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 213 HRY + H C FD+++A + IAKANP+V A KL KI Sbjct: 126 HRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 160 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGP 50 S C+ A L F+H+G C L C A+V + T + P P Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNP 285
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 160 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGP 50 S C+ A L F+H+G C L C A+V + T + P P Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNP 285
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 160 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGP 50 S C+ A L F+H+G C L C A+V + T + P P Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNP 285
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 184 PKSICATSSSCVFAALSFHHAGFCN 110 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = -3 Query: 160 SSCVFAALSFHHAGFCNLSCWAIVMHGT 77 S C+ A L F+H+G C L C A+V + T Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNT 277
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -3 Query: 160 SSCVFAALSFHHAGFCNLSCWAIVMHGT 77 S C+ A L F+H+G C L C A++ + T Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNT 277
>HELS_METJA (Q58524) Putative ski2-type helicase (EC 3.6.1.-) [Contains:| Endonuclease PI-MjaHel (EC 3.1.-.-) (Mja Hel intein) (Mja Pep3 intein)] Length = 1195 Score = 27.7 bits (60), Expect = 7.5 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -3 Query: 184 PKSICATSSSCVFAALSFHHAG 119 P +C T + C+ +FHHAG Sbjct: 289 PTEMCKTLAECILNGSAFHHAG 310
>DGTL1_MYCTU (P0A540) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 431 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/34 (50%), Positives = 18/34 (52%) Frame = +3 Query: 150 THDDEVAQIDFGTFCFADPFLDLVELLRLHHRVG 251 TH EVAQI G LDLVEL L H +G Sbjct: 74 THSLEVAQIGRGMAIGLGCDLDLVELAGLAHDIG 107
>DGTL1_MYCBO (P0A541) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 431 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/34 (50%), Positives = 18/34 (52%) Frame = +3 Query: 150 THDDEVAQIDFGTFCFADPFLDLVELLRLHHRVG 251 TH EVAQI G LDLVEL L H +G Sbjct: 74 THSLEVAQIGRGMAIGLGCDLDLVELAGLAHDIG 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,698,040 Number of Sequences: 219361 Number of extensions: 600567 Number of successful extensions: 1515 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1495 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1515 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
