ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15d10 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 151 bits (382), Expect = 1e-36 Identities = 83/139 (59%), Positives = 97/139 (69%), Gaps = 13/139 (9%) Frame = -3 Query: 588 MAASMITSPIVAPTS-----------LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 442 MA S+++S + P+S LPSLSR +SF V SG KKIKVDKPLG+GGG+ Sbjct: 1 MATSVMSSLSLKPSSFGVDTKSAVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMK 60 Query: 441 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 268 + +D++GRK KGVYQFVDKYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT Sbjct: 61 LRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVT 120 Query: 267 XXXXXXXXXXLVYNTSALA 211 LVYNTSALA Sbjct: 121 LAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 142 bits (359), Expect = 6e-34 Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 11/137 (8%) Frame = -3 Query: 588 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 439 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 438 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 262 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLV 120 Query: 261 XXXXXXXXLVYNTSALA 211 LVYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 142 bits (359), Expect = 6e-34 Identities = 77/137 (56%), Positives = 92/137 (67%), Gaps = 11/137 (8%) Frame = -3 Query: 588 MAASMITSPIVAPT---------SLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV- 439 MA+++++S + PT LPSL+R SSF VV SG KK+K DKP G+ G + + Sbjct: 1 MASTVMSSLSLKPTFTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALR 60 Query: 438 -DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 262 +DA+GRK KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT Sbjct: 61 DGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLL 120 Query: 261 XXXXXXXXLVYNTSALA 211 LVYNTSALA Sbjct: 121 GILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 137 bits (346), Expect = 2e-32 Identities = 71/117 (60%), Positives = 82/117 (70%), Gaps = 2/117 (1%) Frame = -3 Query: 555 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 382 A LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVD Sbjct: 19 AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78 Query: 381 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 211 KYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT LV+NTSALA Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 132 bits (333), Expect = 6e-31 Identities = 74/139 (53%), Positives = 86/139 (61%), Gaps = 13/139 (9%) Frame = -3 Query: 588 MAASMITSPIV-----------APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLT 442 MAAS++ S + A LPSL+R SF +V SG KKIK DKP G+ G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMD 60 Query: 441 V--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVT 268 + +DA+GRK GVY++VDKYGANVDGYSPIY EWS SGD Y GG TGL IWAVT Sbjct: 61 LRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVT 120 Query: 267 XXXXXXXXXXLVYNTSALA 211 LVYNTSALA Sbjct: 121 LAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 131 bits (330), Expect = 1e-30 Identities = 75/140 (53%), Positives = 89/140 (63%), Gaps = 14/140 (10%) Frame = -3 Query: 588 MAASMITSPI-----------VAPTSLPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGL 445 MAAS++ S + ++ LPSL+R SSF +V SG KKIK DKP G+ G + Sbjct: 1 MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSM 60 Query: 444 TV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAV 271 + +DA+GRK GVY+FVDKYGANVDGYSPIY +EWS SGD Y GG TGL IWAV Sbjct: 61 DLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAV 120 Query: 270 TXXXXXXXXXXLVYNTSALA 211 T LVYNTSALA Sbjct: 121 TLAGILAGGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 123 bits (309), Expect = 4e-28 Identities = 68/137 (49%), Positives = 82/137 (59%), Gaps = 11/137 (8%) Frame = -3 Query: 588 MAASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD 436 M+A ++ S + P+S P L R S +V KK++ +P G GGG+ Sbjct: 1 MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60 Query: 435 --IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXX 262 +DA+GR KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT Sbjct: 61 EGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLA 120 Query: 261 XXXXXXXXLVYNTSALA 211 LVY+TSALA Sbjct: 121 GILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 2e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -3 Query: 498 SGGKKIKVDKPLGLGGGLTVDIDA 427 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 401 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 535 P+LP P S + PPPS P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -3 Query: 543 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 397 L ++ R AVVC GG + K D L L G+T DI G KV + V Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = +2 Query: 359 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 508 P T P +T TP PT P+ + +TV P P+P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 359 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 508 P+T+ + N P PT P+ + +TV P P+P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 5.3 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = -3 Query: 504 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 337 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 446 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 571 +PPP+PR S PP Q TT PRR RD R G G+V Sbjct: 53 RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 422 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 541 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 498 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 349 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 9.0 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 498 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 349 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,865,593 Number of Sequences: 219361 Number of extensions: 1201705 Number of successful extensions: 4129 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3865 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4116 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
