ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15d07 |
|---|---|
| Clone Library Name | barley_pub |
>EPAS1_MOUSE (P97481) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (MHLF) (HIF-related factor) (HRF) Length = 874 Score = 32.7 bits (73), Expect = 0.40 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = -3 Query: 234 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 55 GQV +N HSSLC P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVRVYNNCPPHSSLCG-----SKEPLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 54 RAVLKCKYSLC 22 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12| Length = 642 Score = 32.3 bits (72), Expect = 0.52 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = -3 Query: 183 PCQRRGSAPVCPCHVFVCAAVVSDPLLCLSH 91 P ++GS PVCPC + A+ + P LC H Sbjct: 469 PLPQQGSTPVCPCRMVPAASCHALPPLCYCH 499
>EPAS1_RAT (Q9JHS1) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) Length = 874 Score = 31.6 bits (70), Expect = 0.89 Identities = 20/71 (28%), Positives = 33/71 (46%) Frame = -3 Query: 234 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 55 GQV +N HSSLC + P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVRVYNNCPPHSSLCGYKE-----PLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 54 RAVLKCKYSLC 22 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>VMSA_HPBGS (P03144) Major surface antigen precursor| Length = 428 Score = 31.2 bits (69), Expect = 1.2 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRDL 325 V FLW++ I+ SL WW S P P TG++L Sbjct: 222 VYFLWTKILTIAQSLDWWWTSLSFPGGIPECTGQNL 257
>EPAS1_HUMAN (Q99814) Endothelial PAS domain-containing protein 1 (EPAS-1)| (Member of PAS protein 2) (MOP2) (Hypoxia-inducible factor 2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like factor) (HLF) Length = 870 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -3 Query: 234 GQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPLLCLSHLGLARERDIHLS 55 GQV +N H+SLC + P+ C + +C +P+ SH+ + + LS Sbjct: 197 GQVKVYNNCPPHNSLCGYKE-----PLLSCLIIMC-----EPIQHPSHMDIPLDSKTFLS 246 Query: 54 RAVLKCKYSLC 22 R + K++ C Sbjct: 247 RHSMDMKFTYC 257
>INSRR_HUMAN (P14616) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1297 Score = 29.6 bits (65), Expect = 3.4 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 285 HCQRVSPEAHGVLCAADGQ 229 HCQRV P HG+ C A G+ Sbjct: 209 HCQRVCPCPHGMACTARGE 227
>DNAJ_SALTY (P0A1G7) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = -3 Query: 246 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 142 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>DNAJ_SALTI (P0A1G8) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = -3 Query: 246 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 142 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>DNAJ_SALPA (Q5PDJ4) Chaperone protein dnaJ| Length = 374 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = -3 Query: 246 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 142 C GQV R + C CQ RG+ PCH Sbjct: 162 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 196
>DNAJ_SALCH (Q57TP2) Chaperone protein dnaJ| Length = 378 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = -3 Query: 246 CAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCH 142 C GQV R + C CQ RG+ PCH Sbjct: 166 CHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCH 200
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 28.9 bits (63), Expect = 5.8 Identities = 20/66 (30%), Positives = 27/66 (40%) Frame = -3 Query: 285 HCQRVSPEAHGVLCAADGQVPARDNVSSHSSLCRPCQRRGSAPVCPCHVFVCAAVVSDPL 106 HC+ E H C G RDN S LC C + + P C ++ CA+ D Sbjct: 599 HCETNINECHSQPCRHGGTCQDRDN----SYLCL-CLKGTTGPNCEINLDDCASNPCDSG 653 Query: 105 LCLSHL 88 CL + Sbjct: 654 TCLDKI 659
>VMSA_WHV8 (P17400) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259
>VMSA_WHV7 (P12909) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259
>VMSA_WHV59 (P12910) Major surface antigen precursor| Length = 431 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 259
>VMSA_WHVW6 (P11293) Major surface antigen precursor| Length = 282 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 76 VYFLWTKIPTIAQNLDWWWTSLSFPGGIPECTGQN 110
>VMSA_WHV1 (P03143) Major surface antigen precursor| Length = 426 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 220 VYFLWTKILTIAQNLDWWWTSLSFPGGIPECTGQN 254
>HUNB_MUSDO (Q01778) Protein hunchback| Length = 817 Score = 28.5 bits (62), Expect = 7.6 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -1 Query: 362 HHRRAPTARAETSSARDRNAAGNTSNTASVS 270 HH PT A TS++ +++GN+SN++S S Sbjct: 716 HHHHNPTT-ANTSASSTASSSGNSSNSSSTS 745
>KR124_HUMAN (P60329) Keratin-associated protein 12-4 (Keratin-associated| protein 12.4) (High sulfur keratin-associated protein 12.4) Length = 112 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Frame = -3 Query: 267 PEAHGVLCAADGQVPARDNVSSHSSLCRP-------CQRRGSAPVCPCHVFVCAAVVSDP 109 PE +G C A LCRP CQ P PC V C V P Sbjct: 28 PEGYGTSCCCSAPCVAL--------LCRPLCGVSTCCQPACCVP-SPCQVACCVPVSCKP 78 Query: 108 LLCLS 94 +LC++ Sbjct: 79 VLCVA 83
>VMSA_WHV2 (P06432) Major surface antigen precursor| Length = 431 Score = 28.1 bits (61), Expect = 9.9 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = -3 Query: 432 VPFLWSRGTPISMSLQWWHQFKSTPPKSPYGTGRD 328 V FLW++ I+ +L WW S P P TG++ Sbjct: 225 VYFLWTKILTIAQNLDWWCTSLSFPGGIPECTGQN 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,117,895 Number of Sequences: 219361 Number of extensions: 1021696 Number of successful extensions: 3145 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3142 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
