ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERRFI_HUMAN (Q9UJM3) ERBB receptor feedback inhibitor 1 (Mitogen... 31 3.5
2KGUA_MYCH2 (Q601H3) Guanylate kinase (EC 2.7.4.8) (GMP kinase) 30 6.0
3EGSA_SULAC (Q4JB01) Glycerol-1-phosphate dehydrogenase [NAD(P)] ... 30 7.8

>ERRFI_HUMAN (Q9UJM3) ERBB receptor feedback inhibitor 1 (Mitogen-inducible gene|
           6 protein) (Mig-6)
          Length = 462

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 448 LPLRHAVRSGPLEGHTMAERTPQMK 522
           +PL HA +S P+ GH  AE  P  K
Sbjct: 65  IPLGHASKSAPMNGHCFAENGPSQK 89



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>KGUA_MYCH2 (Q601H3) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 197

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 153 TQEEQRQAVVSTFYFPLQIHSFKQTQQLDKYSTWICWF 266
           T+E++R  +    YF L +  FK+  + D++  W C F
Sbjct: 42  TREKRRDEINGVNYFFLTVQEFKEKIENDEFIEWSCHF 79



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>EGSA_SULAC (Q4JB01) Glycerol-1-phosphate dehydrogenase [NAD(P)] (EC 1.1.1.261)|
           (sn-glycerol-1-phosphate dehydrogenase) (G-1-P
           dehydrogenase) (Enantiomeric glycerophosphate synthase)
          Length = 356

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -2

Query: 627 VAGGLRAPIGLENIDLNADSAVAASYPNMGMYTQLFHLGS---AFGHGVPLQRTR 472
           +AG  R   G E++  +A   +   YPN+G++ +L  LG+   A+ HG+  +R R
Sbjct: 244 MAGSTRPASGSEHLFAHA---IELLYPNLGLHGELVALGTIMMAYIHGINWRRIR 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,793,561
Number of Sequences: 219361
Number of extensions: 1297141
Number of successful extensions: 3028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3028
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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