ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCD72_XENTR (Q28GR1) Coiled-coil domain-containing protein 72 37 0.019
2CCD72_MOUSE (Q8K003) Coiled-coil domain-containing protein 72 34 0.16
3CCD72_HUMAN (Q9Y2S6) Coiled-coil domain-containing protein 72 34 0.16
4GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) ... 33 0.36
5GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) ... 30 3.1
6COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph... 28 8.9
7Y022_THEAC (Q9HM47) UPF0204 protein Ta0022 28 8.9

>CCD72_XENTR (Q28GR1) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = -3

Query: 386 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 303
           ++GGK KPLKQ K + KD DE+++A+ Q
Sbjct: 4   REGGKKKPLKQPKKSNKDMDEDEIAFKQ 31



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>CCD72_MOUSE (Q8K003) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 386 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 303
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31



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>CCD72_HUMAN (Q9Y2S6) Coiled-coil domain-containing protein 72|
          Length = 64

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 386 KQGGKAKPLKQAKVAEKDYDENDLAYLQ 303
           ++GGK KPLKQ K   K+ DE D A+ Q
Sbjct: 4   REGGKKKPLKQPKKQAKEMDEEDKAFKQ 31



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>GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) (DmGST21)|
          Length = 215

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +2

Query: 89  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHP 247
           +LNT EG  L+P+ VK +    I  L  +G   W  R     L+  +   D +LP  P
Sbjct: 30  LLNTMEGEQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDYLLPNDP 87



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>GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) (DmGST24)|
          Length = 216

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +2

Query: 89  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHPSG 253
           +LNT E   L+P+ VK +    I  L  +G   W  R     L+  +   D + P  P  
Sbjct: 30  LLNTLEKDQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDTLFPKDPKK 89

Query: 254 Q 256
           Q
Sbjct: 90  Q 90



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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 194 GRLISSHSSSDQILPAHPSGQPWPSAPSGP 283
           G++IS+  SS   LP  P G P P  P+GP
Sbjct: 389 GKVISAEGSSTIALPG-PPGPPGPIGPTGP 417



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>Y022_THEAC (Q9HM47) UPF0204 protein Ta0022|
          Length = 256

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +2

Query: 164 LSFSGHYEWAGRLISSHSSSDQI--LPAHPSGQPWPSAPSG 280
           +S SG Y++   ++S HSS+  +  L AHP+G   PSA  G
Sbjct: 52  MSLSGKYDYLV-VLSRHSSAADVKSLTAHPTGNFGPSADLG 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,014,623
Number of Sequences: 219361
Number of extensions: 773000
Number of successful extensions: 2705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2689
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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