ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15c14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46... 30 5.5
2Y772_METJA (Q58182) Hypothetical protein MJ0772 30 9.4
3OPSG3_ASTFA (P51474) Green-sensitive opsin-3 (Green cone photore... 30 9.4

>DHYS_METKA (Q8TXD7) Probable deoxyhypusine synthase (EC 2.5.1.46) (DHS)|
          Length = 297

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 402 ADEAPMIEVPGVLDQIVGGFIWVLIQTH 485
           ADE   I  PG+LD +VG  +W+  Q H
Sbjct: 162 ADEGVPIYSPGILDSMVGLHVWIHSQDH 189



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>Y772_METJA (Q58182) Hypothetical protein MJ0772|
          Length = 353

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = -2

Query: 367 ECFPK*ISSRRLANMYFAYKHGKSFVKLLCHPLEVTALHIFVSVVNHNFRTVYFVDLHSK 188
           E FP+ I + +    YFA  HG        + +        + + N N  T+Y +  HSK
Sbjct: 179 EIFPEGILNTKATIRYFAKVHG--------YYISDRVAEYLLKITNGNLETIYLILRHSK 230

Query: 187 IWKQQLCVLVIPY 149
              + L  L IP+
Sbjct: 231 REIKNLRELKIPW 243



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>OPSG3_ASTFA (P51474) Green-sensitive opsin-3 (Green cone photoreceptor pigment|
           3)
          Length = 354

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 192 PKYGSSSYVFWLYHIHCFVSALVVYILVGQ 103
           PKY + SYV +++ +H  V   V++   G+
Sbjct: 199 PKYNNESYVIYMFVVHFIVPVTVIFFTYGR 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,275,916
Number of Sequences: 219361
Number of extensions: 1835487
Number of successful extensions: 4121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4120
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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