>MAK5_YEAST (P38112) ATP-dependent RNA helicase MAK5 (EC 3.6.1.-) (Maintenance|
           of killer protein 5)
          Length = 773

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -2

Query: 583 PSGTMLQPASAAAVCRLKRWNLLMATTFQSK*VLILFCPVRRLYAKLRKRAQVLKGGSFG 404
           P  T L P S   +  L+  N L  T  Q K + ++   V            V+   S G
Sbjct: 170 PEWTNLAPLSMTILQSLQNLNFLRPTEIQKKSIPVIMQGV-----------DVMGKASTG 218

Query: 403 SGTTIVYSLTEAEKLLLN-TMGNAEPVELNIT 311
           SG T+ Y +   EKL+ N +  N +P+ L  T
Sbjct: 219 SGKTLAYGIPIVEKLISNFSQKNKKPISLIFT 250

>Y3055_STRAW (Q82IS8) UPF0182 protein SAV3055|
          Length = 998

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 508 TTFQSK*VLILFCPVRRL-YAKLRKRAQVLKGGSFGSGTTIVYSLTEAEKL 359
           T++Q K  + L  P+ R  YA      Q+L  G+ G G+ I+Y+ T  E++
Sbjct: 513 TSYQGKSGVNLSSPINRAAYAVAFSEPQILYSGAIGEGSRILYNRTPKERV 563

>RL13A_RAT (P35427) 60S ribosomal protein L13a|
          Length = 202

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -1

Query: 608 APHKTMTRTVRHYAPAGQRRRRVPVEEMEFVDGYYLSIEVSADLVLP------RAKTVRQ 447
           AP +   RTVR   P   +R +  +E ++ +DG     +    +V+P      R K  R+
Sbjct: 74  APSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRK 133

Query: 446 VAQKGASAQ--GWEF 408
            A  G  A   GW++
Sbjct: 134 FAYLGRLAHEVGWKY 148

>RL13A_MOUSE (P19253) 60S ribosomal protein L13a (Transplantation antigen P198)|
           (Tum-P198 antigen)
          Length = 202

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = -1

Query: 608 APHKTMTRTVRHYAPAGQRRRRVPVEEMEFVDGYYLSIEVSADLVLP------RAKTVRQ 447
           AP +   RTVR   P   +R +  +E ++ +DG     +    +V+P      R K  R+
Sbjct: 74  APSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRK 133

Query: 446 VAQKGASAQ--GWEF 408
            A  G  A   GW++
Sbjct: 134 FAYLGRLAHEVGWKY 148


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,427,472
Number of Sequences: 219361
Number of extensions: 2071445
Number of successful extensions: 4890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4879
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)