Clone Information

BLAST Search Result

Clone Name	rbasd15c10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3	251	2e-66
2	PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)	110	3e-24
3	PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB) ...	110	4e-24
4	PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB...	107	3e-23
5	PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB) ...	104	3e-22
6	ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)	102	2e-21
7	ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)	101	3e-21
8	ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)	100	4e-21
9	PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neura...	98	2e-20
10	PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Bra...	98	2e-20
11	PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neu...	98	2e-20
12	PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB...	86	9e-17
13	HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (...	79	2e-14
14	HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (...	75	2e-13
15	HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-l...	68	3e-11
16	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	65	2e-10
17	PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2	46	1e-04
18	PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1	41	0.003
19	MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA...	40	0.005
20	NUCL_XENLA (P20397) Nucleolin (Protein C23)	40	0.007
21	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	39	0.012
22	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	39	0.016
23	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	39	0.016
24	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	39	0.016
25	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	37	0.060
26	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	37	0.078
27	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	36	0.10
28	NUCL_CHICK (P15771) Nucleolin (Protein C23)	35	0.17
29	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	35	0.30
30	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	35	0.30
31	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	35	0.30
32	TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A pro...	35	0.30
33	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	35	0.30
34	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	34	0.39
35	S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplas...	34	0.50
36	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	33	0.66
37	NUCL_MESAU (P08199) Nucleolin (Protein C23)	33	1.1
38	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	33	1.1
39	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	33	1.1
40	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	32	1.5
41	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	32	1.5
42	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	32	1.9
43	RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei...	32	1.9
44	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	32	2.5
45	NUCL_RAT (P13383) Nucleolin (Protein C23)	32	2.5
46	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	32	2.5
47	PDXJ_PORGI (Q51843) Pyridoxal phosphate biosynthetic protein pdx...	32	2.5
48	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	31	4.3
49	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	31	4.3
50	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	31	4.3
51	YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ...	30	5.6
52	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	30	5.6
53	SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr...	30	5.6
54	SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr...	30	5.6
55	DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111...	30	5.6
56	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	30	7.3
57	YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 ...	30	7.3
58	NUCL_PONPY (Q5RF26) Nucleolin	30	7.3
59	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	30	7.3
60	SYFB_SYNY3 (P74296) Phenylalanyl-tRNA synthetase beta chain (EC ...	30	7.3
61	NUCL_MACFA (Q4R4J7) Nucleolin	30	7.3
62	YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 i...	30	7.3
63	YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ...	30	9.5
64	DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)	30	9.5
65	CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic ...	30	9.5

>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3|
          Length = 432

 Score =  251 bits (641), Expect = 2e-66
 Identities = 115/167 (68%), Positives = 142/167 (85%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           FS+YGNIVRIK+LRNKPDHALVQM DG Q ELA+H+LKGAML G++LEVNFSK+P+ITP 
Sbjct: 266 FSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPG 325

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSK 350
            D+HDY  SNLNRFN N AKNYR+CC+PTK+IH+S L  +++E+ ++ H+ EHG +V +K
Sbjct: 326 TDSHDYVNSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTK 385

Query: 349 LFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI 209
           +FE +GK QALVQFE+EEEA EALVCKHA+ L GS IRISFSQ+Q I
Sbjct: 386 VFEMNGKKQALVQFENEEEAAEALVCKHATSLGGSIIRISFSQLQTI 432



 Score = 36.2 bits (82), Expect = 0.10
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEAL--VC 272
           +K++H+  +  EISE+ +++     G I K  +  A  K QAL+Q +    A  AL    
Sbjct: 5   SKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRA--KNQALLQMQDVSSAVSALQFFT 62

Query: 271 KHASKLEGSTIRISFSQMQNI 209
                + G  + + FS  Q +
Sbjct: 63  NVQPTIRGRNVYVQFSSHQEL 83

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>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)|
          Length = 531

 Score =  110 bits (276), Expect = 3e-24
 Identities = 65/171 (38%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+KVL NK ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ S+   
Sbjct: 358 FGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLP 417

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         DY  S L+RF    +KN+++   P+  +H+S + P ISED +    S +
Sbjct: 418 REGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEDDLKILFSSN 477

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G IVK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 478 GGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 528



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
 Frame = -3

Query: 700 YGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 530
           +G +  + +L+ K + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMHTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 392
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 391 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 218
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 217 QNI 209
            ++
Sbjct: 261 TSL 263



 Score = 31.2 bits (69), Expect = 3.3
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -3

Query: 451 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 275
           A   ++ +S L+PE ++  ++      +G + + K+   + K  ALVQ     +A  A+ 
Sbjct: 334 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVL-FNKKENALVQMADGSQAQLAMS 392

Query: 274 CKHASKLEGSTIRISFSQMQNI 209
             +  KL G  +RI+ S+ Q++
Sbjct: 393 HLNGHKLHGKPVRITLSKHQSV 414

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>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (Pyrimidine-binding protein) (PYBP)
          Length = 555

 Score =  110 bits (275), Expect = 4e-24
 Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K+L NK ++ALV+MADG Q +LA+ +L G  L G+ + +  SK+ S+   
Sbjct: 382 FGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLP 441

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         DY +S L+RF    +KN+++   P+  +H+S + P +SED +    S +
Sbjct: 442 REGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSN 501

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 502 GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 552



 Score = 35.0 bits (79), Expect = 0.23
 Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 19/183 (10%)
 Frame = -3

Query: 700 YGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 530
           +G +  + +L+ K + A ++M+        ++Y      +L GQ + + FS +  + T +
Sbjct: 81  FGKVTNLLMLKGK-NQAFIEMSTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 392
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 140 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 199

Query: 391 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 218
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 200 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 259

Query: 217 QNI 209
            ++
Sbjct: 260 TSL 262



 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -3

Query: 451 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 275
           A   ++ +S L+PE ++  ++      +G + + K+   + K  ALV+     +A  A+ 
Sbjct: 358 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVEMADGSQAQLAMS 416

Query: 274 CKHASKLEGSTIRISFSQMQNI 209
             +  KL G ++RI+ S+ Q++
Sbjct: 417 HLNGHKLHGKSVRITLSKHQSV 438

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>PTBP1_HUMAN (P26599) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
           (57 kDa RNA-binding protein PPTB-1)
          Length = 531

 Score =  107 bits (268), Expect = 3e-23
 Identities = 60/171 (35%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K+L NK ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ ++   
Sbjct: 358 FGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLP 417

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         DY  S L+RF    +KN+++   P+  +H+S + P +SE+ +    S +
Sbjct: 418 REGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN 477

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 478 GGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 528



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -3

Query: 451 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 275
           A   ++ +S L+PE ++  ++      +G + + K+   + K  ALVQ     +A  A+ 
Sbjct: 334 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-FNKKENALVQMADGNQAQLAMS 392

Query: 274 CKHASKLEGSTIRISFSQMQNI 209
             +  KL G  IRI+ S+ QN+
Sbjct: 393 HLNGHKLHGKPIRITLSKHQNV 414



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
 Frame = -3

Query: 700 YGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 530
           +G +  + +L+ K + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 392
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 391 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 218
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 217 QNI 209
            ++
Sbjct: 261 TSL 263

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>PTBP1_PIG (Q29099) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 557

 Score =  104 bits (259), Expect = 3e-22
 Identities = 61/171 (35%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +Y ++ R+K+L NK ++ALVQMADG Q +LA+ +L G  L G+ + +  SK+ ++   
Sbjct: 384 FGVYCDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSKHQNVQLP 443

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         DY  S L+RF    +KN+++   P+  +H+S + P ISE+ +    S +
Sbjct: 444 REGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSISEEDLKILFSSN 503

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G IVK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 504 GGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENHHLRVSFSK 554



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
 Frame = -3

Query: 700 YGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 530
           +G +  + +L+ K + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 82  FGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDS 140

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 392
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 141 SPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 200

Query: 391 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 218
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 201 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 260

Query: 217 QNI 209
            ++
Sbjct: 261 TSL 263



 Score = 30.0 bits (66), Expect = 7.3
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -3

Query: 451 APTKIIHISALSPE-ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALV 275
           A   ++ +S L+PE ++  ++      +  + + K+   + K  ALVQ     +A  A+ 
Sbjct: 360 AGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKIL-FNKKENALVQMADGSQAQLAMS 418

Query: 274 CKHASKLEGSTIRISFSQMQNI 209
             +  KL G  +RI+ S+ QN+
Sbjct: 419 HLNGHKLHGKPVRITLSKHQNV 440

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>ROD1_MOUSE (Q8BHD7) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  102 bits (253), Expect = 2e-21
 Identities = 58/171 (33%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K++ NK ++ALVQMAD  Q +LA+++L G  L G+ L    SK+ ++   
Sbjct: 350 FGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLP 409

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +    +E 
Sbjct: 410 REGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEA 469

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 470 GCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520



 Score = 33.1 bits (74), Expect = 0.86
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 472 KNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEE 293
           K  R  C+P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE 
Sbjct: 20  KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEA 77

Query: 292 A 290
           A
Sbjct: 78  A 78



 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 451 APTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 272
           +P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A + 
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209

Query: 271 KHASKLEGS--TIRISFSQMQNI 209
                +  +  T+RI FS++ ++
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232

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>ROD1_RAT (Q9Z118) Regulator of differentiation 1 (Rod1)|
          Length = 523

 Score =  101 bits (251), Expect = 3e-21
 Identities = 57/171 (33%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K++ NK ++ALVQMAD  Q ++A+++L G  L G+ L    SK+ ++   
Sbjct: 350 FGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSKHQAVQLP 409

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +    +E 
Sbjct: 410 REGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTMDDLKNLFTEA 469

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 470 GCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 520



 Score = 33.1 bits (74), Expect = 0.86
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 472 KNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEE 293
           K  R  C+P++++H+  +  +++E  +I      G +  + L    GK+QA ++  SEE 
Sbjct: 20  KGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKV--TNLLMLKGKSQAFLEMASEEA 77

Query: 292 A 290
           A
Sbjct: 78  A 78



 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = -3

Query: 451 APTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVC 272
           +P   I I  L   ++ + + +  S+ GT++K   F  + + QAL+Q+     A  A + 
Sbjct: 150 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMA 209

Query: 271 KHASKLEGS--TIRISFSQMQNI 209
                +  +  T+RI FS++ ++
Sbjct: 210 LDGQNIYNACCTLRIDFSKLTSL 232

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>ROD1_HUMAN (O95758) Regulator of differentiation 1 (Rod1)|
          Length = 521

 Score =  100 bits (249), Expect = 4e-21
 Identities = 58/171 (33%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K++ NK ++ALVQMAD  Q +LA+++L G  L G+ L    SK+ ++   
Sbjct: 348 FGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLP 407

Query: 529 PDAH-------DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+S S L+RF    +KN+++   P+  +H+S + P ++ D +     E 
Sbjct: 408 REGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEA 467

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 468 GCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSK 518



 Score = 35.8 bits (81), Expect = 0.13
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = -3

Query: 511 STSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASG 332
           ST+N N  +S   K  R  C+P++++H+  +  +++E  II      G +  + L    G
Sbjct: 7   STANGN--DSKKFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKV--TNLLMLKG 62

Query: 331 KTQALVQFESEEEA 290
           K+QA ++  SEE A
Sbjct: 63  KSQAFLEMASEEAA 76

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>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural|
           polypyrimidine tract-binding protein) (PTB-like protein)
          Length = 531

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 57/171 (33%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K+L NK D AL+QMADG Q++LA+++L G  + G+ + V  SK+ ++   
Sbjct: 359 FGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLP 418

Query: 529 PD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +    +  
Sbjct: 419 REGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 479 GGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = -3

Query: 634 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 461
           DG+ TE+A+   +G+  +L G  L    S    +    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 460 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 290
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched|
           polypyrimidine tract-binding protein) (Brain-enriched
           PTB) (RRM-type RNA-binding protein brPTB) (Neural
           polypyrimidine tract-binding protein)
          Length = 531

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 57/171 (33%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K+L NK D AL+QMADG Q++LA+++L G  + G+ + V  SK+ ++   
Sbjct: 359 FGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLP 418

Query: 529 PD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +    +  
Sbjct: 419 REGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 479 GGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
 Frame = -3

Query: 634 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 461
           DG+ TE+A+   +G+  +L G  L    S    +    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 460 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 290
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched|
           homolog of PTB) (Neural polypyrimidine tract-binding
           protein) (PTB-like protein)
          Length = 531

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 57/171 (33%), Positives = 98/171 (57%), Gaps = 8/171 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YG++ R+K+L NK D AL+QMADG Q++LA+++L G  + G+ + V  SK+ ++   
Sbjct: 359 FGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLP 418

Query: 529 PD-------AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEH 371
            +         D+  S L+RF    +KN+++   P+  +H+S + P ++E+ +    +  
Sbjct: 419 REGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANT 478

Query: 370 GTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
           G  VK+  F    K  AL+Q  + EEA +AL+  H   L E   +R+SFS+
Sbjct: 479 GGTVKAFKFFQDHK-MALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSK 528



 Score = 33.1 bits (74), Expect = 0.86
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = -3

Query: 634 DGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYR 461
           DG+ TE+A+   +G+  +L G  L    S   S+    + +D       +F      +  
Sbjct: 2   DGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSSMVVTANGNDSK-----KFKGEDKMDG- 55

Query: 460 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEA 290
              AP++++HI  L  E++E  +I      G +  + +    GK QA ++  +EE A
Sbjct: 56  ---APSRVLHIRKLPGEVTETEVIALGLPFGKV--TNILMLKGKNQAFLELATEEAA 107

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>PTBP1_MOUSE (P17225) Polypyrimidine tract-binding protein 1 (PTB)|
           (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I)
          Length = 527

 Score = 86.3 bits (212), Expect = 9e-17
 Identities = 57/170 (33%), Positives = 90/170 (52%), Gaps = 7/170 (4%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAI--HYLKGAMLLGQKLEVNFSKYPSIT 536
           F +YG++ R+K+L NK ++ALVQMADG Q +L       + A  +     V  S+  +  
Sbjct: 356 FGVYGDVQRVKILFNKKENALVQMADGSQAQLGEPPERAQAAREVSAHYTVQASECAAAR 415

Query: 535 PAPD----AHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHG 368
              +      DY +S L RF    +KN+++   P+  +H+S + P +SED +    S +G
Sbjct: 416 EGQEDQGLTKDYGSSPL-RFKKPGSKNFQNIFPPSATLHLSNIPPSVSEDDLKSLFSSNG 474

Query: 367 TIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKL-EGSTIRISFSQ 221
            +VK   F    +  AL+Q  S EEA +AL+  H   L E   +R+SFS+
Sbjct: 475 GVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDLGENHHLRVSFSK 524



 Score = 33.5 bits (75), Expect = 0.66
 Identities = 36/183 (19%), Positives = 76/183 (41%), Gaps = 19/183 (10%)
 Frame = -3

Query: 700 YGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGA--MLLGQKLEVNFSKYPSI-TPA 530
           +G +  + +L+ K + A ++M         ++Y      +L GQ + + FS +  + T +
Sbjct: 81  FGKVTNLLMLKGK-NQAFIEMNTEEAANTMVNYYTSVAPVLRGQPIYIQFSNHKELKTDS 139

Query: 529 PDAHDYSTSNLNRFNSNVAKNYRHCCA--------------PTKIIHISALSPEISEDAI 392
                 + + L   NS  + N     +              P   I +  L   ++ D +
Sbjct: 140 SPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVL 199

Query: 391 IEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGS--TIRISFSQM 218
            +  S+ GT++K   F  + + QAL+Q+     A  A +      +  +  T+RI FS++
Sbjct: 200 HQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 259

Query: 217 QNI 209
            ++
Sbjct: 260 TSL 262

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>HNRPL_HUMAN (P14866) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 558

 Score = 78.6 bits (192), Expect = 2e-14
 Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YGN+ ++K +++KP  A+V+MADG   + AI +L    + GQKL V  SK P+I P 
Sbjct: 372 FCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPG 431

Query: 529 P---------DAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
                        D+S S  NRF++           P+ ++H      E++E+   E   
Sbjct: 432 QSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD 491

Query: 376 EHGTIVKSKLFEASGKTQ----ALVQFESEEEATEAL 278
           E G    S +   SGK++     L+++ES+ +A E L
Sbjct: 492 ELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETL 528

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>HNRPL_MOUSE (Q8R081) Heterogeneous nuclear ribonucleoprotein L (hnRNP L)|
          Length = 555

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YGN+ ++K +++KP  A+V+MADG   + AI +L    + GQK+ V  SK P+I P 
Sbjct: 369 FCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPG 428

Query: 529 P---------DAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
                        D+S S  NRF++           P+ ++H      E++E+   E   
Sbjct: 429 QSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD 488

Query: 376 EHGTIVKSKLFEASGKTQ----ALVQFESEEEATEAL 278
           E G    + +   SGK++     L++++S+ +A E L
Sbjct: 489 ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETL 525

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>HNRLL_HUMAN (Q8WVV9) Heterogeneous nuclear ribonucleoprotein L-like (Stromal|
           RNA-regulating factor) (BLOCK24 protein)
          Length = 542

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YGNI ++K ++  P  ALV+M D    E A+ +L    L G++L V  SK  S+ P+
Sbjct: 356 FCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPS 415

Query: 529 ---------PDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
                        D++ S  NRF S    +      P+ ++H   +   ++E+   +  +
Sbjct: 416 QIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCN 475

Query: 376 EHG--TIVKSKLFEA--SGKT-QALVQFESEEEATEALVCKHASKL---EGS---TIRIS 230
           +H   T +K K+F+A  S KT   L+++E + +A EAL   +  ++    GS   T+++ 
Sbjct: 476 DHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLC 535

Query: 229 FSQMQNI 209
           FS   ++
Sbjct: 536 FSTSSHL 542



 Score = 33.9 bits (76), Expect = 0.50
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 490 FNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQ 311
           F+   A    H  + + ++H+  L   + E  ++E L + GTI    +     K QALV+
Sbjct: 60  FSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVE 117

Query: 310 FESEEEATEAL 278
           FE+ + A E +
Sbjct: 118 FENIDSAKECV 128

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>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 50/187 (26%), Positives = 93/187 (49%), Gaps = 20/187 (10%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSITPA 530
           F +YGNI ++K ++  P  ALV+M D    E A+ +L    L G++L V  SK  S+ P+
Sbjct: 405 FCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPS 464

Query: 529 ---------PDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
                        D++ S  NRF S    +      P+ ++H   +   ++E+   +  +
Sbjct: 465 QIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCN 524

Query: 376 EHGTI--VKSKLFE--ASGKT-QALVQFESEEEATEALVCKHASKL---EGS---TIRIS 230
           +H  +  +K K+F+  AS KT   L++++ + +A EAL   +  ++    GS   T+++ 
Sbjct: 525 DHEVLPFIKYKVFDAKASAKTLSGLLEWKCKTDAVEALTALNHYQIRVPNGSNPYTLKLC 584

Query: 229 FSQMQNI 209
           FS   ++
Sbjct: 585 FSTSSHL 591



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -3

Query: 460 HCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEA 281
           H  + + ++H+  L   + E  ++E L + GTI    +     K QALV+FE+ + A E 
Sbjct: 119 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKEC 176

Query: 280 L 278
           +
Sbjct: 177 V 177

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>PTBP2_ARATH (Q9FGL9) Polypyrimidine tract-binding protein homolog 2|
          Length = 429

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
 Frame = -3

Query: 466 YRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEAT 287
           +R+   P+K++H+  L  E +E+ +IE     GT+V +K    + + QA ++FE   +A 
Sbjct: 10  FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69

Query: 286 EALVCKHASKLE-----GSTIRISFSQMQNI 209
           + ++  +AS  E     G T+ + +S  Q I
Sbjct: 70  Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99

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>PTBP1_ARATH (Q9MAC5) Polypyrimidine tract-binding protein homolog 1|
          Length = 399

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
 Frame = -3

Query: 487 NSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQF 308
           +S+    +R+   P+K++H+  L  E  E+ +I+     G IV +K    + + QA V+F
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEF 61

Query: 307 ESEEEATEALVCKHAS-----KLEGSTIRISFSQMQNI 209
               +A  ++V  +AS     ++ G T+ I +S    I
Sbjct: 62  ADLNQAI-SMVSYYASSSEPAQIRGKTVYIQYSNRHEI 98



 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -3

Query: 409 ISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 239
           ++ D +    S +GT+ K  +FE +G TQAL+Q+    +   A + K A  LEG  I
Sbjct: 256 VTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQY---SDIPTAAMAKEA--LEGHCI 307



 Score = 29.6 bits (65), Expect = 9.5
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = -3

Query: 418 SPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTI 239
           S E+S D I    S  G + K   FE +   QALVQF   E A+ A      S L+G +I
Sbjct: 121 SHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-----RSALDGRSI 175

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>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 38/173 (21%), Positives = 64/173 (36%), Gaps = 2/173 (1%)
 Frame = -3

Query: 709 FSIYGNIVRI--KVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSIT 536
           F  +G IV I  K +   P +A +Q  D      AI  + G  L   +L++ F K     
Sbjct: 459 FQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK----- 513

Query: 535 PAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK 356
                                        PT  + +  LS  +S+  +  H   +G +VK
Sbjct: 514 ---------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVK 546

Query: 355 SKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 197
                  G   ALV +   E+A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 547 VVFDRLKG--MALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 597

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>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 22/75 (29%), Positives = 45/75 (60%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K++ ++ LS   +ED++ E + E  T ++    +   K  A ++F S E+A +A+   +
Sbjct: 413 SKVLVVNNLSYSATEDSLRE-VFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCN 471

Query: 265 ASKLEGSTIRISFSQ 221
            +++EG +IR+ FSQ
Sbjct: 472 NTEIEGRSIRLEFSQ 486



 Score = 32.3 bits (72), Expect = 1.5
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = -3

Query: 343 EASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
           + S K  A V+F +E+EA +AL  K  +++EG +I + F+
Sbjct: 357 DGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT 396

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>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
 Frame = -3

Query: 544 SITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGT 365
           ++  +P A D +T  L R  S          A  K + +  L  +++E  +IEH S+ GT
Sbjct: 64  AMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGT 123

Query: 364 IVKSKLF--EASGKTQ--ALVQFESEEEATEALVCK 269
           + K+++   + SGK +    V F++ + A +A V K
Sbjct: 124 VEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVK 159

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>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE---ASGKTQALVQFESEEEATEALVCKH 266
           +++  L P IS++ + E  S  GT+  SK+      + K    V F + EEATEA+    
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379

Query: 265 ASKLEGSTIRISFSQ 221
              +E   + ++ +Q
Sbjct: 380 GKMIESKPLYVAIAQ 394

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 2/173 (1%)
 Frame = -3

Query: 709 FSIYGNIVRI--KVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYPSIT 536
           F  +G IV I  K +   P +A +Q  D      AI  + G  L   +L++ F K     
Sbjct: 458 FQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKMDGEYLGNNRLKLGFGK----- 512

Query: 535 PAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK 356
                                        PT  + +  LS  +S+  +  H   +G +VK
Sbjct: 513 ---------------------------SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVK 545

Query: 355 SKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFSQMQNI*QFF 197
                  G   ALV +   E A  A+      K+ G+ I++ F+  ++   F+
Sbjct: 546 VVFDRLKG--MALVLYNEIEYAQAAVKETKGRKIGGNKIKVDFANRESQLAFY 596

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>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 38.9 bits (89), Expect = 0.016
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
 Frame = -3

Query: 610 IHYLKGAMLLGQKLEVNFSKYPSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIH 431
           I  L    + G+K++VN ++ P      +  D +T+         A++ +   +P K+ +
Sbjct: 142 IEKLNDTEIGGRKIKVNITEKPL-----EGMDIATTQ--------AEDSQFVESPYKV-Y 187

Query: 430 ISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQA----LVQFESEEEATEALVCKHA 263
           I  L+  ++ + + +  SE G ++ +K+    G +++     V F SEEE   A+   + 
Sbjct: 188 IGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNN 247

Query: 262 SKLEGSTIRIS 230
           S LEG  IR++
Sbjct: 248 SVLEGQKIRVN 258

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>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 37.0 bits (84), Expect = 0.060
 Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLF-EASGKTQ--ALVQFESEEEATEALVCKH 266
           I++  ++  ++E+ + +H S+ GTI  +KL  +  GK++    V F + EEA +A+   H
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 265 ASKLEGSTIRISFSQ 221
                G  + ++ +Q
Sbjct: 366 GQMFHGKPLYVAIAQ 380

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>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 36.6 bits (83), Expect = 0.078
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -3

Query: 448 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 281
           PT  I++  +  +I +  + +  SEHG +V +++     SG+++    V   SE E +EA
Sbjct: 189 PTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEA 248

Query: 280 LVCKHASKLEGSTIRISFSQ 221
           +       L+G TIR++ ++
Sbjct: 249 IANLDGQTLDGRTIRVNAAE 268

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>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
 Frame = -3

Query: 448 PTKIIHISALSPEISEDAIIEHLSEHGTIVK-----SKLFEASGKTQALVQFESEEEATE 284
           PTK+ HI  L+  +++D I+E  S +G I        +      K  A V+FE+ EEA +
Sbjct: 137 PTKV-HIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEK 195

Query: 283 ALVCKHASKLEGSTIRIS 230
           AL      +++G  I  S
Sbjct: 196 ALKHMDGGQIDGQEITAS 213

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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + ++ LS   SE+ + E   +  +I   +  +   K  A V+F + E+A EAL   +
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519

Query: 265 ASKLEGSTIRISFS 224
            +++EG  IR+ FS
Sbjct: 520 NTEIEGRAIRLEFS 533

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>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFS 554
           FS YG +  + + RN P  A V+  D    E A+  L G ++ G ++ V  S
Sbjct: 60  FSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 111

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAML--LGQKLEVNFSKYPSIT 536
           F  YG + R+ +   K   A V M D    E AI  L        G++L V ++K     
Sbjct: 22  FRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKN---- 74

Query: 535 PAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIE-HLSEHGTIV 359
              D      S  +R +S+  +       P+K + +     + +    +E H   +G IV
Sbjct: 75  ---DRGGAGRSGGSRRSSSGLR-------PSKTLFVINFDAQNTRTRDLERHFEPYGKIV 124

Query: 358 KSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
             ++     +  A +Q+E++E+AT AL   ++SKL    I + ++
Sbjct: 125 NVRI----RRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYA 165

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>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
 Frame = -3

Query: 517 DYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKL--- 347
           D STS     N    K       P+  + +  LS     DAI E  ++HG +V  ++   
Sbjct: 242 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 301

Query: 346 -FEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
                 K    VQF + E+A +AL       ++   +R+ FS
Sbjct: 302 PETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFS 343

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>TNR6A_HUMAN (Q8NDV7) Trinucleotide repeat-containing gene 6A protein (CAG repeat|
            protein 26) (Glycin-tryptophan protein of 182 kDa) (GW182
            autoantigen) (GW1 protein) (EMSY interactor protein)
          Length = 1962

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 445  TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
            T  + +  L+P+I    +     +HG ++   L    G   ALV++ S+EE  +A    H
Sbjct: 1780 TNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGN--ALVRYSSKEEVVKAQKSLH 1837

Query: 265  ASKLEGSTIRISFSQMQNI*QFFLE 191
               L  +TI   F+  + I +FF +
Sbjct: 1838 MCVLGNTTILAEFASEEEISRFFAQ 1862

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>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 34.7 bits (78), Expect = 0.30
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFS 554
           FS YG +  + + RN P  A V+  D    E A+  L G ++ G ++ V  S
Sbjct: 31  FSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 34.3 bits (77), Expect = 0.39
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 3/165 (1%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAML--LGQKLEVNFSKYPSIT 536
           F  YG + R+ +   K   A V M D    E AI  L        G++L V ++K     
Sbjct: 22  FRKYGKVERVDM---KAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTK----- 73

Query: 535 PAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIE-HLSEHGTIV 359
            +    D  +   +R +S+  +       P+K + +     + +    +E H   +G IV
Sbjct: 74  -SERGGDKRSGGGSRRSSSSMR-------PSKTLFVINFDADNTRTRDLEKHFEPYGKIV 125

Query: 358 KSKLFEASGKTQALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
             ++     +  A +Q+E++E+AT AL   + SKL    I + ++
Sbjct: 126 NVRI----RRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYA 166

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>S17P_SPIOL (O20252) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor|
           (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase)
           (SED(1,7)P2ase)
          Length = 387

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 297 SSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSDISGESAEM 431
           +S++ C+R+ VLP  S      +VP S+    + SS + GES  M
Sbjct: 3   TSMACCSRSIVLPRVSPQHSSALVPSSINLKSLKSSSLFGESLRM 47

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>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 13/173 (7%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNK-----PDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSKYP 545
           F   GN+  ++V+ +K          V M+   + E A     G  L G+ L VN     
Sbjct: 111 FESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP-- 168

Query: 544 SITPAPDAHDYST----SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
              P P   D  +    S+     S               +++  LS  + + A+    S
Sbjct: 169 ---PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFS 225

Query: 376 EHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEGSTIRIS 230
           E G +V++++     SG+++    V ++S +E   A+     + L+G  IR+S
Sbjct: 226 EQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278

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>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + +S LS   +E+ + E   +   I   +  +   K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 265 ASKLEGSTIRI 233
             ++EG TIR+
Sbjct: 544 KMEIEGRTIRL 554

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>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 269
           +++  LS  + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268

Query: 268 HASKLEGSTIRISFSQMQNI*QF 200
           +   L+G +IR+S ++ +   QF
Sbjct: 269 NGVDLDGRSIRVSAAEERPRRQF 291

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHASK 257
           +++  L  ++ E  + +   ++G I    +    G   A V+FE   +A +A+  +   +
Sbjct: 11  VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70

Query: 256 LEGSTIRISFSQ 221
            +G  IR+ F++
Sbjct: 71  FDGRRIRVEFTR 82

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>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
 Frame = -3

Query: 403 EDAIIEHL-SEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCKHASKLEGSTI 239
           +DA +E L SEHG +V +++     +G+++    V   SE E ++A+       L+G TI
Sbjct: 242 DDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTI 301

Query: 238 RISFSQ 221
           R++ ++
Sbjct: 302 RVNVAE 307

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>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEALVCK 269
           +++  LS  + + A+ E  SE G +V +K+     SG+++    V + S +E  +A+   
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269

Query: 268 HASKLEGSTIRISFSQMQNI*QF 200
           +   L+G +IR+S ++ +   QF
Sbjct: 270 NGIDLDGRSIRVSAAEERPRRQF 292

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -3

Query: 436 IHISALSPEISEDAIIEHLSEHGTIVKSKLFE--ASGKTQA--LVQFESEEEATEALVCK 269
           +++  L  ++SE  + E   + G +V + + +   +G+ Q    V+F SEE+A  A+   
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 268 HASKLEGSTIRISFSQMQN 212
           +  KL G  IR++ +   N
Sbjct: 75  NMIKLYGKPIRVNKASAHN 93

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>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 551
           F+ YG +  + +  N P  A V+       E A   L G+ LLG +L V  SK
Sbjct: 27  FTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEISK 79

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>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 15/166 (9%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPD-----HALVQMADGLQTELAIHYLKGAMLLGQKLEVNF-SKY 548
           FS YG IV I ++R+K          +   D   T LA+    G  + G+ + V+  S Y
Sbjct: 56  FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVSNY 115

Query: 547 PSITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHG 368
            +   + D  D  T  L           + C   T      +  PE+SED   +   +H 
Sbjct: 116 RAPQESEDVDDV-TRELQE---------KGCGVKTP----PSSPPEVSEDEDAKLTKKHK 161

Query: 367 TIVKSKLFEASGKTQALVQFES---------EEEATEALVCKHASK 257
              K K      KT+   Q E          +E+  E    KH+SK
Sbjct: 162 KDKKEKKKRKKEKTEGQAQAEQPSCSRSATVKEKKDERASRKHSSK 207

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>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 487 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 546

Query: 265 ASKLEGSTIRI 233
             ++EG TIR+
Sbjct: 547 KMEIEGRTIRL 557

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>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
 Frame = -3

Query: 496 NRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQ 323
           NR  SNV+         TK +++S +  + +ED + E+ +++GT+ KS++   +A+ K +
Sbjct: 105 NRSESNVS---------TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPR 155

Query: 322 --ALVQFESEEEATEALVCK 269
               V F+  +   + ++ K
Sbjct: 156 GFGFVTFDDHDSVDQCVLQK 175

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>PDXJ_PORGI (Q51843) Pyridoxal phosphate biosynthetic protein pdxJ (PNP|
           synthase)
          Length = 238

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 541 ITPAPDAHDYSTSNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLS 377
           +T  PDA D  TSN      +VA+NY H C   +  H   +   I  D  ++++S
Sbjct: 89  VTMVPDAPDVLTSNAGW---DVARNYDHLCRLVERFHAWGIRTSIFIDTDLDNIS 140

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>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 523 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 350
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 349 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 523 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 350
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 349 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
 Frame = -3

Query: 523 AHDYST-SNLNRFNSNVAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVK-SK 350
           +H +S  S   R   N A    +CC     + +  LS   +E  + E  S++G I   S 
Sbjct: 95  SHSHSPMSTRRRHVGNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSI 149

Query: 349 LFEASGKTQ---ALVQFESEEEATEALVCKHASKLEGSTIRISFS 224
           +++   +     A V FE+ ++A EA    +  +L+G  IR+ FS
Sbjct: 150 VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194

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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
           region
          Length = 1140

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 228 KEILMVDPSSLLACLQTRASVASSSLSNCTRACVLPLASNSFDLTMVPCSLRCSMIASSD 407
           KE+     S + + L + +S ASS++S       LP +S    +T  P S       SS 
Sbjct: 217 KEVFSSSTSDVSSLLSSTSSPASSTISE-----TLPFSSTILSITSSPVSSEAPSATSSS 271

Query: 408 ISGESA 425
           +S E++
Sbjct: 272 VSSEAS 277

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>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVK-SKLFEASGKTQALVQFESEEEATEALVCK 269
           +K + +S LS   +++ + E + E  T +K  +      K  A ++F S E+A EAL   
Sbjct: 485 SKTLVLSNLSYSATKETL-EEVFEKATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSC 543

Query: 268 HASKLEGSTIRI 233
           +  ++EG TIR+
Sbjct: 544 NKMEIEGRTIRL 555

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>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20) (X16 protein)
          Length = 164

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFS 554
           F  YG +  + V RN P  A V+  D      A+  L G  L G ++ V  S
Sbjct: 30  FGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 81

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>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20)
          Length = 164

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLRNKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFS 554
           F  YG +  + V RN P  A V+  D      A+  L G  L G ++ V  S
Sbjct: 30  FGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 81

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>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast|
           precursor
          Length = 387

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = -3

Query: 403 EDAIIEHLSEHGTIVKSKLFEASGKT-------QALVQFESEEEATEALVCKHASKLEGS 245
           ED +     ++GT+ +  +FE +          +  VQF   EE T+ALV        G 
Sbjct: 301 EDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGR 360

Query: 244 TIRISF 227
           T+R +F
Sbjct: 361 TVRATF 366

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>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
 Frame = -3

Query: 448 PTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLF--EASGKTQAL--VQFESEEEATEA 281
           P   +++  L  ++    + +  SEHG +V++++     +G+++    V     +E  EA
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301

Query: 280 LVCKHASKLEGSTIRISFSQ 221
           +       LEG  IR++ ++
Sbjct: 302 ISALDGQNLEGRAIRVNVAE 321

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>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic|
           region
          Length = 1584

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +3

Query: 156 ESLERKRGHLTFSRKNCYMFCIWEKEILMVDPSSLLACLQTRASVASSSLSN 311
           E++  KRG+L   +KN  +F +   EI+   PSS L    TR S   S++S+
Sbjct: 765 ENVISKRGNLII-KKNLSIFGLPSNEIMSGSPSSYLGSSHTRTSSKLSNMSD 815

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>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 486 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 545

Query: 265 ASKLEGSTIRI 233
             ++EG  IR+
Sbjct: 546 KREIEGRAIRL 556

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>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 484 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 543

Query: 265 ASKLEGSTIRI 233
             ++EG  IR+
Sbjct: 544 KREIEGRAIRL 554

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>SYFB_SYNY3 (P74296) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 810

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 37  KPSRLKWYRQAGIILQPSQKIQATILGHGANKDRYT*QTWKV*KERGVISLFPGRTAICS 216
           KP  + WY   G++    Q++ AT+   G ++D                 L PGRTA+ S
Sbjct: 618 KPQPMSWYDAKGLLEAIFQRLGATVTYSGDHQDP---------------RLHPGRTALLS 662

Query: 217 ASG 225
            +G
Sbjct: 663 CNG 665

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>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 445 TKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKH 266
           +K + +S LS   +E+ + E   +   I   +      K  A ++F S E+A EAL   +
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 544

Query: 265 ASKLEGSTIRI 233
             ++EG  IR+
Sbjct: 545 KREIEGRAIRL 555

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>YKV4_YEAST (P36036) Hypothetical 23.8 kDa protein in URA1-DOA1 intergenic|
           region
          Length = 203

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = -3

Query: 442 KIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALVQFESEEEATEALVCKHA 263
           K I IS +  ++S+  + + + E G+ + SK+F+       + +FE  E   + +   + 
Sbjct: 64  KRIRISKIPLDVSDYTLDDMIKEFGSPIFSKIFDNKEDRTCIYEFEDPEVLEKIVERYNG 123

Query: 262 SKLEGSTIRISFSQMQ 215
            +L  + I +   Q Q
Sbjct: 124 HELHNAKIEVEIYQPQ 139

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>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -3

Query: 709 FSIYGNIVRIKVLR---NKPDHALVQMADGLQTELAIHYLKGAMLLGQKLEVNFSK 551
           F  YG++ R+KVLR   N+P +A VQ  +    + A+   +G +L G++L    +K
Sbjct: 117 FKKYGDLARVKVLRDNANRP-YAFVQYNNDHDAKHALIRAQGTLLNGRRLRCEPAK 171

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>DNE21_RHIME (Q92LA6) Error-prone DNA polymerase 1 (EC 2.7.7.7)|
          Length = 1116

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = +2

Query: 155 GKFRKKEGSSHF-------FQEELLYVLHLGERNPNGGSLE-LARMLTDQSFGRLFLALE 310
           G  R K+G           +QEELL ++  GE  P   SLE L   L + +  RL+L L 
Sbjct: 100 GNLRSKKGDCTLHLADLLEWQEELLLIVMQGEGRPEPESLEVLLGTLKEHAGNRLYLGLA 159

Query: 311 LH 316
            H
Sbjct: 160 PH 161

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>CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic and hepatic|
           tumor over-expressed protein) (Ch-TOG protein)
          Length = 2032

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -3

Query: 478 VAKNYRHCCAPTKIIHISALSPEISEDAIIEHLSEHGTIVKSKLFEASGKTQALV 314
           +A+++RHC A T  +  S L P  +  A+++H+++    V+   FEA G    +V
Sbjct: 420 IARSFRHCTAST--LPKSLLKPFCA--ALLKHINDSAPEVRDAAFEALGTALKVV 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,324,802
Number of Sequences: 219361
Number of extensions: 1997749
Number of successful extensions: 5723
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 5497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5699
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result