ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd14n08 |
|---|---|
| Clone Library Name | barley_pub |
>RUBB_SECCE (Q43831) RuBisCO large subunit-binding protein subunit beta,| chloroplast (60 kDa chaperonin subunit beta) (CPN-60 beta) (Fragment) Length = 499 Score = 68.9 bits (167), Expect = 3e-12 Identities = 33/35 (94%), Positives = 33/35 (94%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSGFGY 132 SVAKTFLTSDVVVVEIKEPE APL NPMDNSGFGY Sbjct: 465 SVAKTFLTSDVVVVEIKEPEAAPLANPMDNSGFGY 499
>RUBB_ARATH (P21240) RuBisCO large subunit-binding protein subunit beta,| chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) Length = 600 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/35 (82%), Positives = 31/35 (88%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSGFGY 132 SVAKTFL SD VVVEIKEPEP P+ NPMDNSG+GY Sbjct: 566 SVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYGY 600
>RUBB_PEA (P08927) RuBisCO large subunit-binding protein subunit beta,| chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) Length = 595 Score = 58.5 bits (140), Expect = 4e-09 Identities = 28/34 (82%), Positives = 30/34 (88%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSGFG 135 SVAKTFL SD VVVEIKEPE AP+ NPMDNSG+G Sbjct: 560 SVAKTFLMSDCVVVEIKEPESAPVGNPMDNSGYG 593
>RUBB_BRANA (P21241) RuBisCO large subunit-binding protein subunit beta,| chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) Length = 588 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/23 (86%), Positives = 20/23 (86%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAP 168 SVAKTFL SD VVVEIKEPEP P Sbjct: 566 SVAKTFLMSDCVVVEIKEPEPVP 588
>RUBB_CHLRE (Q42693) RuBisCO large subunit-binding protein subunit beta-1 (60| kDa chaperonin subunit beta-1) (CPN-60 beta-1) (Fragment) Length = 435 Score = 35.4 bits (80), Expect = 0.040 Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPM--DNSGFG 135 SVAKTFL +DVVV E+KE E NP+ +GFG Sbjct: 397 SVAKTFLLADVVVTELKEIEAGAKPNPVAPGAAGFG 432
>RUBC_CHLRE (Q42695) RuBisCO large subunit-binding protein subunit beta-2 (60| kDa chaperonin subunit beta-2) (CPN-60 beta-2) (Fragment) Length = 259 Score = 34.3 bits (77), Expect = 0.089 Identities = 17/23 (73%), Positives = 18/23 (78%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAP 168 SVAKTFL +DVVV EI E E AP Sbjct: 228 SVAKTFLLADVVVTEIPEKEKAP 250
>CH60_CLOBO (Q8KJ24) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 543 Score = 33.5 bits (75), Expect = 0.15 Identities = 17/32 (53%), Positives = 19/32 (59%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSG 141 SVA TFLT++ VV EI E PAP M G Sbjct: 507 SVASTFLTTECVVAEIPEKNPAPQAPGMGGMG 538
>CH60_BACFO (P81284) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 543 Score = 31.2 bits (69), Expect = 0.75 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNP 156 S+A FLT++ VV + KE PAP +NP Sbjct: 508 SIAGMFLTTECVVADKKEEAPAPPMNP 534
>CH60_TROWT (P69205) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 540 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAP 168 S+A FLT++ VV E EP+PAP Sbjct: 507 SIAGLFLTTEAVVAEKPEPKPAP 529
>CH60_TROWH (P69204) 60 kDa chaperonin (Protein Cpn60) (groEL protein) (Heat| shock protein 65) Length = 540 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAP 168 S+A FLT++ VV E EP+PAP Sbjct: 507 SIAGLFLTTEAVVAEKPEPKPAP 529
>CH60_TROW8 (Q83NN0) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 540 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAP 168 S+A FLT++ VV E EP+PAP Sbjct: 507 SIAGLFLTTEAVVAEKPEPKPAP 529
>TLR4_PAPAN (Q9TSP2) Toll-like receptor 4 precursor (CD284 antigen)| Length = 826 Score = 29.6 bits (65), Expect = 2.2 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 40 YIIIMINLSKLGSCYQKLNHILWRDSTVAHQYPKPELSMGLT 165 Y + NL L K+ +I +D V HQ P P LS+ L+ Sbjct: 170 YFSNLTNLEHLDLSSNKIQNIYCKDLQVLHQMPLPNLSLDLS 211
>CH60_HELHP (Q7U317) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 545 Score = 28.9 bits (63), Expect = 3.7 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSG 141 SV+ LT++ + EIKE +PAP + M G Sbjct: 508 SVSSLLLTTEATINEIKEDKPAPAMPDMGGMG 539
>CH602_SYNP6 (Q5N3T6) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 555 Score = 28.5 bits (62), Expect = 4.9 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPA 171 SVA LT++V+VV+ EPEPA Sbjct: 510 SVASLILTTEVLVVDQPEPEPA 531
>CH60_WOLRE (Q93GW2) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 547 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 236 SVAKTFLTSDVVVVEIKEPEPAPLVNPMDNSG 141 SVA LT++ + E+KE +P P + M G Sbjct: 507 SVASLLLTTEATISELKEDKPMPAMPDMSGMG 538 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,525,424 Number of Sequences: 219361 Number of extensions: 366080 Number of successful extensions: 1115 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1093 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1115 length of database: 80,573,946 effective HSP length: 54 effective length of database: 68,728,452 effective search space used: 1649482848 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
