>SECG_SULTO (Q975W7) Preprotein translocase secG subunit (Protein transport|
           protein SEC61 beta subunit homolog)
          Length = 58

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = -2

Query: 307 RRSEYPLSEEVDPIKRAERSNLMLWTSPRFTLVGAIIIVSALLIYTIVVPP 155
           ++   PL+     I+  E  N  +  SP+  ++ +II+V+ +++ +I++PP
Sbjct: 7   KKETVPLASMAGLIRYYEEENEKIKISPKLLIIISIIMVAGVIVASILIPP 57

>SYI_PYRHO (O58792) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1066

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 15/76 (19%)
 Frame = -2

Query: 394 DKAWSTFKKKGKKTLFSEFTPNKYVTWNPR----------RSEYPLSEEVD-----PIKR 260
           + AW T KK  +K L  +    + + W PR          R EY L ++       PI+ 
Sbjct: 159 ESAWFTLKKAWEKGLLEK--DKRVLHWCPRCETALAEHEVRGEYKLRKDPSIYVKFPIEG 216

Query: 259 AERSNLMLWTSPRFTL 212
            E   L++WT+  +TL
Sbjct: 217 KENEYLLIWTTTPWTL 232

>CAC1H_MOUSE (O88427) Voltage-dependent T-type calcium channel alpha-1H subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.2)
          Length = 2365

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 442  GSLESSEGRARGQAVEPRIS--RKPVVSPWPLPVGDST-DQGGSFPRAA 579
            G LES E RAR   +EP +   RK  +SP  + +   T D+G S P AA
Sbjct: 2174 GHLESGEVRARASELEPALGARRKKKMSPPCISIDPPTEDEGSSRPPAA 2222

>AOX_MAGGR (O93788) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
           (MgAOX) (AOXMg)
          Length = 377

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 378 VDQALSQSVDDVSPSSLPRLSGEPREQXXXXXXXXXXXKNLPETSSIPMAPPRW 539
           V  ALS     V  ++LPRL+  PR               + ET  I   PP W
Sbjct: 23  VTPALSYQASSVYSANLPRLAASPRLFSTTSSAQLRDFFPVKETEHIRQTPPTW 76

>Y4NK_RHISN (P55583) Hypothetical 72.8 kDa protein y4nK|
          Length = 662

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 224 WACPQHQVRPLSSFDWIDFF*QWILTAPWVPGHIF 328
           W  P+H ++             WI+ APWVP H+F
Sbjct: 248 WMAPEHGLQT------------WIIQAPWVPQHVF 270

>MOBA_DEIRA (Q9RWM1) Probable molybdopterin-guanine dinucleotide biosynthesis|
           protein A
          Length = 193

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 525 PWGYYWFPG-DSWLDGLPSRSPLAALEAPRTSAA 427
           P G Y  PG ++W D  P   PLA LE   T AA
Sbjct: 50  PPGKYALPGWETWPDTRPGEGPLAGLEVALTHAA 83

>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)|
          Length = 877

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = +3

Query: 84  YNTDFQVESSAYSSPVICHFSSYLGGTTIV*ISNAETMIIAPTKVNLGLVHNIKLDLSAL 263
           Y    + E+   +SP   HF     G   +  S    M+  PT   L      KL L  +
Sbjct: 402 YTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLA-----KLCLQEV 456

Query: 264 LIGSTSSDN----GYSLRRGFQVTYLFGVNSENRVFFPFFLKVDQALSQSVD 407
           L  ST +       ++L     +    G N   ++  P  +K D++L+Q ++
Sbjct: 457 LAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDDESLAQFIE 508

>RL22_PROMP (Q7UZV1) 50S ribosomal protein L22|
          Length = 128

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 234 HNIKLDLSALLIGSTSSDNGYSLRR 308
           HN+ +D S+L+I S S+DNG  ++R
Sbjct: 68  HNLGMDPSSLVISSASADNGPVMKR 92

>SECG_SULAC (P60464) Preprotein translocase secG subunit (Protein transport|
           protein SEC61 beta subunit homolog)
          Length = 59

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 9/51 (17%), Positives = 29/51 (56%)
 Frame = -2

Query: 307 RRSEYPLSEEVDPIKRAERSNLMLWTSPRFTLVGAIIIVSALLIYTIVVPP 155
           ++ + P++     ++  E     +  SP+  +V +I++++ ++I + ++PP
Sbjct: 7   KKEDVPIASMAGLVRYYESEKEKVKISPKVVVVASIVLIAGVIIASFIIPP 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,482,658
Number of Sequences: 219361
Number of extensions: 2049558
Number of successful extensions: 5787
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5779
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)