ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd15b19 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 216 bits (549), Expect = 7e-56 Identities = 105/198 (53%), Positives = 138/198 (69%) Frame = -3 Query: 674 DDTASFKNFKKWGNVEFPLPFGRVLSSTESFIHELDDKTSASLKFTVLNTKGRIWTMVAG 495 D TA + KWG++EFP PFGR E++I +LD K+ ASLK T+LN KGRIWTMVAG Sbjct: 222 DATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAG 281 Query: 494 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATADPDGRKRALLIG 315 GGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ +L T + + L+IG Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIG 341 Query: 314 GGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMRKLGAEIGVP 135 G IANFT+VAATF GI+RA+R+ + LK + ++VRRGGPNYQ GL M ++G G+P Sbjct: 342 GSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIP 401 Query: 134 IEVYGPEATMTGICKQAI 81 I V+G E MT I A+ Sbjct: 402 IHVFGTETHMTAIVGMAL 419
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 215 bits (548), Expect = 9e-56 Identities = 108/200 (54%), Positives = 141/200 (70%), Gaps = 2/200 (1%) Frame = -3 Query: 674 DDTASFKNFKKWGNVEFPLPFGRVLSSTESFIHELDDKTSASLKFTVLNTKGRIWTMVAG 495 D TA + KWG++EFP PFGR E++I +LD K+ ASLK T+LN KGRIWTMVAG Sbjct: 222 DATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAG 281 Query: 494 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATAD--PDGRKRALL 321 GGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ +L T + PDG + L+ Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILI 339 Query: 320 IGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMRKLGAEIG 141 IGG IANFT+VAATF GI+RA+R+ + LK + ++VRRGGPNYQ GL M ++G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 140 VPIEVYGPEATMTGICKQAI 81 +PI V+G E MT I A+ Sbjct: 400 IPIHVFGTETHMTAIVGMAL 419
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 215 bits (547), Expect = 1e-55 Identities = 108/199 (54%), Positives = 140/199 (70%), Gaps = 2/199 (1%) Frame = -3 Query: 674 DDTASFKNFKKWGNVEFPLPFGRVLSSTESFIHELDDKTSASLKFTVLNTKGRIWTMVAG 495 D TA + KWG++EFP PFGR E++I +LD K+ ASLK T+LN KGRIWTMVAG Sbjct: 222 DATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAG 281 Query: 494 GGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDCATAD--PDGRKRALL 321 GGASV+Y+DT+ DLG +EL NY EYSGAP+E++ YA+ +L T + PDG + L+ Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDG--KILI 339 Query: 320 IGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMRKLGAEIG 141 IGG IANFT+VAATF GI+RA+R+ + LK + ++VRRGGPNYQ GL M ++G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 140 VPIEVYGPEATMTGICKQA 84 +PI V+G E MT I A Sbjct: 400 IPIHVFGTETHMTAIVGMA 418
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 210 bits (534), Expect = 4e-54 Identities = 110/211 (52%), Positives = 141/211 (66%), Gaps = 13/211 (6%) Frame = -3 Query: 674 DDTASFKNFKKW----------GNVEFPLPFGRVLSSTESFIHELDDKTSASLKFTVLNT 525 D+TA+F KW +VEFP PFGR L+S E +I E+D KT ASLK T+LN Sbjct: 223 DETANFLCADKWKSRLTPYGGPNHVEFPAPFGRDLTSEEQYISEMDAKTGASLKLTILNR 282 Query: 524 KGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVLDC---AT 354 KGR+WTMVAGGGASV++ DTV DLG ASEL NY EYSG P+E + +YA+ +L T Sbjct: 283 KGRVWTMVAGGGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGT 342 Query: 353 ADPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGL 174 PDG + L+IGG IANFT+VA TF GI+RA SKLK ++ ++VRRGGPNYQ GL Sbjct: 343 PRPDG--KVLIIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGL 400 Query: 173 AKMRKLGAEIGVPIEVYGPEATMTGICKQAI 81 +++ ++ +PI V+GPE MT I A+ Sbjct: 401 RRIKDAATKLELPIHVFGPETHMTAIVGAAL 431
>SUCC1_STRCO (Q9KY56) Succinyl-CoA synthetase beta chain 1 (EC 6.2.1.5)| (SCS-beta 1) Length = 394 Score = 36.2 bits (82), Expect = 0.093 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 6/153 (3%) Frame = -3 Query: 503 VAGGGASVIYADTVGDLGYASEL------GNYAEYSGAPNEEEVLQYARVVLDCATADPD 342 + G GA ++ + T+ + YA E N+ + G + + + ++L DPD Sbjct: 254 IIGNGAGLVMS-TLDVVAYAGEAHGNVKPANFLDIGGGASAQVMANGLEIIL----GDPD 308 Query: 341 GRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMR 162 R + + GGI +VA +GI++AL+ E + + L VR G N + G R Sbjct: 309 VRSVFVNVFGGITACDEVA---NGIVQALKLLEDRGEKVEKPLVVRLDGNNAELG----R 361 Query: 161 KLGAEIGVPIEVYGPEATMTGICKQAIECIMAA 63 K+ + P+ TM G +A E AA Sbjct: 362 KILTDANHPL--VQRVDTMDGAADKAAELAHAA 392
>HCP_CHLTE (Q8KBT4) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster| protein) (HCP) Length = 539 Score = 35.8 bits (81), Expect = 0.12 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 15/163 (9%) Frame = -3 Query: 590 ESFIHELDDK----TSASLKFTVLNTKGRIWTMVAGGGASVIYADTVGDLGYASELGNYA 423 E F ++D K S L TV NT +V ++ D V L + + A Sbjct: 45 EGFEGKIDRKYGQFISECLFVTVTNTNFDDVAIVEQIRKALAMRDEVRALAGTTPAHDAA 104 Query: 422 EYSGAPNEEEVLQYARVVLDCATADPDGRK-RALLIGG--GIANFTDVAAT--------F 276 +SG+ EE + + A +D +ADPD R ++L++ G G+A +TD AA + Sbjct: 105 NWSGSTKEEFLAKAAACSIDSLSADPDLRSLKSLILYGIKGLAAYTDHAAVLGYHDDDIY 164 Query: 275 SGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMRKLGAE 147 + ++ L +L A + V G +A + K E Sbjct: 165 AFYVKGLSALTKELPADELLGLVMECGATAVKAMALLDKANTE 207
>YE9A_SCHPO (O13772) Hypothetical proline/serine-rich protein C17A5.10 in| chromosome I Length = 224 Score = 34.7 bits (78), Expect = 0.27 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%) Frame = +1 Query: 304 AIPPPMRRALLRPSG------SAVAQSSTTLAYCRTSSSLGAPLYSA*FPNSEAYPKSPT 465 ++PPP +LR G S+ Q+ST+ + +SSS P Y+A NS S + Sbjct: 5 SVPPPSYEEVLRQEGVIDSPNSSNGQTSTSAGHPSSSSST-LPNYAASSLNSRPVSSSGS 63 Query: 466 VSAYMTLAPPPATIVQMRP 522 +AY PPA RP Sbjct: 64 GNAYSQAPYPPARPTSQRP 82
>SUCC_METTH (O27115) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 365 Score = 33.9 bits (76), Expect = 0.46 Identities = 36/139 (25%), Positives = 57/139 (41%) Frame = -3 Query: 545 KFTVLNTKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVL 366 +F + G I + G G ++ D + G E + + G +E+ + R L Sbjct: 229 EFAFVKLDGDIAVIGNGAGLTLTAMDLIKLNG---EPATFLDIGGGASEDVI----RRAL 281 Query: 365 DCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNY 186 D + P R L + GGI DVA G++ ALR+ + L +R G N Sbjct: 282 DLVISHPSVRVVFLNVLGGITRADDVA---RGVVNALRDARRDVP-----LVIRLTGTNE 333 Query: 185 QTGLAKMRKLGAEIGVPIE 129 + G +R E G+P E Sbjct: 334 EEGQRILR----EAGIPFE 348
>MKNK2_XENLA (Q6P431) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 467 Score = 31.6 bits (70), Expect = 2.3 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 9/126 (7%) Frame = +1 Query: 31 KQLLNCILIY*AAIMHSIA-CLQMPVIVASGPYTSIGTPI------SAPSLRIFASPVW* 189 K L++ +L+ A S A LQ P + + PY ++ TPI SA L FA+ Sbjct: 341 KDLISKLLLRDAKKRLSAAQVLQHPWVQGNAPYNTLPTPIILQRNSSAKDLTSFAAEAIA 400 Query: 190 FGPPRRT*RYILDAFNLDSFSLNARMMPLKVAATSVKLAIPPPMRRALL--RPSGSAVAQ 363 R +++ + + N+ + P V ATS + + PP L R GS Sbjct: 401 MN------RQLMEREEEEEGTENSSLCPFVVKATSCSMQLSPPSESKLAKRRQQGSKGGI 454 Query: 364 SSTTLA 381 S +LA Sbjct: 455 SPPSLA 460
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 31.6 bits (70), Expect = 2.3 Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = +1 Query: 313 PPMRRALLRPSGSAVAQSSTTLAYCRTSSSLGAPL---YSA*FPNSEAYPKSPTVSAYMT 483 PP + SAVA SS TSS L AP + FP S+ KSPT + Sbjct: 823 PPAPHLPPSSTSSAVASSS------ETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLH 876 Query: 484 LAPPPATIVQMRPFVFKTV 540 L P PA P F+ V Sbjct: 877 LVPEPAAPPPPPPRTFQMV 895
>DHRS4_PIG (Q8WNV7) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (N Length = 260 Score = 31.2 bits (69), Expect = 3.0 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -3 Query: 614 FGRVLSSTESFIHELDDKT-SASLKFTVLNTKGRIWTMVAGGGASVIYADTVGDLGYASE 438 FG ++ +TE E+ DK ++K TVL TK + M GG SV+ +VG Sbjct: 105 FGNIIDATE----EVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPN 160 Query: 437 LGNY 426 LG Y Sbjct: 161 LGPY 164
>DPO3B_TREPA (O83048) DNA polymerase III beta subunit (EC 2.7.7.7)| Length = 371 Score = 30.8 bits (68), Expect = 3.9 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 324 KGSLAAIRVRSRTIKYYSSILQNLLLVGSTTVFC 425 +G+L IR + + +SI N+L G+TTVFC Sbjct: 38 QGALLTIRATDTKVTFETSIPVNVLAEGTTTVFC 71
>KSR2_HUMAN (Q6VAB6) Kinase suppressor of ras-2 (hKSR2)| Length = 829 Score = 30.4 bits (67), Expect = 5.1 Identities = 23/63 (36%), Positives = 27/63 (42%) Frame = +1 Query: 310 PPPMRRALLRPSGSAVAQSSTTLAYCRTSSSLGAPLYSA*FPNSEAYPKSPTVSAYMTLA 489 P P R L S S S YC TS + GAP+Y+ + TV AY L Sbjct: 66 PTPWIRTHL--SQSPRVPSKCVQHYCHTSPTPGAPVYT--------HVDRLTVDAYPGLC 115 Query: 490 PPP 498 PPP Sbjct: 116 PPP 118
>ZIC4_MOUSE (Q61467) Zinc finger protein ZIC 4 (Zinc finger protein of the| cerebellum 4) Length = 341 Score = 30.4 bits (67), Expect = 5.1 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +2 Query: 278 RWQQHQ*SWLYHLQ*EGLSCGHQGPQ---SHNQVLL*HTAEPPPRWEHHCILRNFLTL 442 R +H+ S + G SCGH GPQ S N +L E PP+ H L L L Sbjct: 15 RSPRHRFSCTLFVSTTGSSCGHHGPQLAASSNPSVLPGLHEQPPQASHSRPLNGLLRL 72
>PGK_DESVH (P62412) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 393 Score = 30.0 bits (66), Expect = 6.7 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = -3 Query: 326 LLIGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMRKLGAE 147 L++GGGIAN AA + + ++L E E +A+R+ +A R G E Sbjct: 211 LIVGGGIANNFIKAAGYE-VGKSLYEPELVEEAARL--------------MAAARAAGGE 255 Query: 146 IGVPIE-VYGPE 114 I VP++ V GPE Sbjct: 256 IPVPLDVVVGPE 267
>CANB_ASHGO (Q757B7) Calcineurin subunit B (Protein phosphatase 2B regulatory| subunit) (Calcineurin regulatory subunit) Length = 175 Score = 30.0 bits (66), Expect = 6.7 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = -3 Query: 575 ELDDKTSASL-KFTVLNTKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNE 399 +LD +S S+ K ++ G +AG V AD GD+ + + + +SG ++ Sbjct: 32 KLDRDSSGSIDKNEFMSIPGVSSNPLAGRIMEVFDADNSGDVDFQEFISGLSVFSGRSDK 91 Query: 398 EEVLQYARVVLDCATADPDG 339 EE L++A + D D DG Sbjct: 92 EEKLRFAFKIYD---IDKDG 108
>GUX1_TRIHA (Q9P8P3) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (CBHI) (1,4-beta-cellobiohydrolase) Length = 505 Score = 29.6 bits (65), Expect = 8.7 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 462 NCVGVYDTGTTSSNHCPDASLCVQNC 539 NC YD T SS CPD + C +NC Sbjct: 65 NC---YDGNTWSSTLCPDDATCAKNC 87
>URE1_PROMI (P17086) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 567 Score = 29.6 bits (65), Expect = 8.7 Identities = 23/69 (33%), Positives = 30/69 (43%) Frame = -3 Query: 341 GRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKASRMYLYVRRGGPNYQTGLAKMR 162 G K AL+I GG+ + + G I A + MY + G YQT + M Sbjct: 441 GVKPALIIKGGMVRYAPM-----GDINAAIPTPQPVHYRPMYACL--GKAKYQTSMIFMS 493 Query: 161 KLGAEIGVP 135 K G E GVP Sbjct: 494 KAGIEAGVP 502 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,077,405 Number of Sequences: 219361 Number of extensions: 2436709 Number of successful extensions: 7160 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 6883 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7151 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
