>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 228

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E+A    ET+ A++ GAKAMK++    +ID VD+TMDEI EQ E  ++I DA+S 
Sbjct: 88  QLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISR 147

Query: 499 PL 494
           PL
Sbjct: 148 PL 149

>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent|
           degradation protein 1) (Vacuolar protein
           sorting-associated protein VPS32)
          Length = 240

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 30/62 (48%), Positives = 41/62 (66%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E+A    ET+ A++ GAKAMK +    +ID VD+TMDEI EQ E   +I DA+S 
Sbjct: 90  QLFSIESANLNLETMRAMQEGAKAMKTIHSGLDIDKVDETMDEIREQVELGDEISDAISR 149

Query: 499 PL 494
           PL
Sbjct: 150 PL 151

>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 28/63 (44%), Positives = 41/63 (65%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+I +E A    ET+ A++ GAKAMK +    ++D V+ TMDEI EQ E   +I +A+S 
Sbjct: 88  QLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISR 147

Query: 499 PLG 491
           P+G
Sbjct: 148 PVG 150

>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 232

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E A    ET+ A++ GA AMK + K  ++D VD TMDEI EQ E  ++I +A+S 
Sbjct: 87  QLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISK 146

Query: 499 PL 494
           PL
Sbjct: 147 PL 148

>SNF7_ASHGO (Q753W3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 237

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 26/62 (41%), Positives = 41/62 (66%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E A    ET+ A++ GA AMK + +  +++ VD+TMDEI EQ E  ++I +A+S 
Sbjct: 89  QLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAISR 148

Query: 499 PL 494
           PL
Sbjct: 149 PL 150

>SNF7_DEBHA (Q6BSH2) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 25/63 (39%), Positives = 40/63 (63%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E A    ET+ A++ GA+AMK +    ++D V+ TMD+I EQ E   +I +A+S 
Sbjct: 87  QLTSIEGANLNLETMKAMKQGAQAMKQIHGEYDVDKVENTMDDIREQVELADEISEAISR 146

Query: 499 PLG 491
           P+G
Sbjct: 147 PVG 149

>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 215

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/57 (43%), Positives = 35/57 (61%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAP 497
           LE A    ET+ A++ GAKAMK +    NID VDK MDE  +Q    +++ +A+S P
Sbjct: 87  LETANLNLETMKAMQEGAKAMKQIHGNMNIDKVDKIMDETRDQVALSEEVSEAISRP 143

>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 23/59 (38%), Positives = 35/59 (59%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           +++ K T  TVDA++ GAK MK   K   ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 96  IQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein|
           sorting-associated protein vps32)
          Length = 222

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 23/63 (36%), Positives = 40/63 (63%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  ++ A    ET+ A+R GA+AMK++Q+  + D VD+ MD+I +Q    ++I   +S 
Sbjct: 87  QLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMIST 146

Query: 499 PLG 491
           P+G
Sbjct: 147 PVG 149

>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 219

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           ++  K T  TVDA++ GAK MK   K   ID ++   D++ +  EN  +IQ+ALS   G
Sbjct: 96  IQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALSRSYG 154

>SNF7_CRYNE (Q5KL29) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 220

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 24/63 (38%), Positives = 37/63 (58%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q+  +E+A    ET+ A++ GA A+K +      + VD TMD+I EQ +    I DA+S 
Sbjct: 88  QVNAIESANLNAETMVAMKKGADALKGIHSNLTAEGVDATMDKIREQMDLTNDISDAISN 147

Query: 499 PLG 491
           P+G
Sbjct: 148 PVG 150

>CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 220

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +ID VD+ M +I EQ E  ++I DA+S P+G
Sbjct: 94  LENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152

>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 224

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 25/59 (42%), Positives = 34/59 (57%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMK   +  +ID VD  M +I EQ E  ++I DA+S P+G
Sbjct: 94  LENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152

>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying|
           protein 5)
          Length = 220

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           ++  K T  TV+A++ GAK MK   K   ID ++   D++ +  E+  ++Q+ALS   G
Sbjct: 96  IQTLKDTKTTVEAMKIGAKEMKKAYKNVKIDQIEDLQDQLEDMMEDANEVQEALSRSYG 154

>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +I+ VD+ M +I +Q E  ++I DA+S P+G
Sbjct: 94  LENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 222

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +I+ VD+ M +I +Q E  ++I DA+S P+G
Sbjct: 94  LENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVG 152

>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a|
           (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar
           protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog
           associated with Alix-2)
          Length = 222

 Score = 45.4 bits (106), Expect = 2e-04
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
 Frame = -2

Query: 664 EAAKATTETVDALRTGAKAMKAMQKA---TNIDDVDKTMDEINEQTENMKQIQDALSAPL 494
           EA +  T   + LRT   A ++M+KA    +ID VD+ M +I EQ E  +QI DA+S P+
Sbjct: 91  EAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPM 150

Query: 493 G 491
           G
Sbjct: 151 G 151

>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 227

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/59 (42%), Positives = 33/59 (55%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct: 98  LENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156

>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b)
          Length = 224

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 96  LENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b|
           (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar
           protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog
           associated with Alix 1) (hVps32)
          Length = 224

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE A   TE +  +   AKAMKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct: 96  LENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154

>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 227

 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 36/59 (61%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPLG 491
           LE +   TE +  +   AKAMKA  +  +++ +D  M +I+EQ +  ++I DA+S P+G
Sbjct: 100 LENSHTNTEVLKNMGYAAKAMKAAHENMDLEKIDDLMQDIHEQQDVAQEISDAISRPVG 158

>CG301_HUMAN (P59074) Protein CGI-301|
          Length = 171

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSA 500
           Q   LE A   TE +  + + AKA KA     +ID VD+ M +I +Q E  ++I  A+S 
Sbjct: 52  QQQALENANTNTEVLKNMGSAAKAKKAAHDNMDIDKVDELMQDIADQQELGEEISTAISK 111

Query: 499 PLG 491
           P+G
Sbjct: 112 PVG 114

>CHMP6_BRARE (Q503V0) Charged multivesicular body protein 6 (Chromatin-modifying|
           protein 6)
          Length = 205

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALSAPL 494
           +E A+   + ++ L+ G   +K M +  +I++V+K MDE ++  E  KQI + L+  L
Sbjct: 90  IEFAQIEMKVIEGLKVGNDCLKKMHEVLSIEEVEKIMDETHDAIEYQKQIDEMLAGSL 147

>SNF7_MAGGR (P0C149) Vacuolar sorting protein SNF7 (Vacuolar protein|
           sorting-associated protein VPS32)
          Length = 226

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 18/59 (30%), Positives = 37/59 (62%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 503
           Q+  +E+A    ET++A++   KAM+ +     ++ VD+TMD++ EQ    ++I +A++
Sbjct: 90  QINAIESANINMETLEAMKKAGKAMEDIHGKLTVEKVDETMDKLREQNALSEEIVNAIT 148

>CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 503
           LE +   TE +  +   AKAMKA+ +  +++ +D  M +I EQ +  ++I +A S
Sbjct: 96  LENSHTNTEVLRNMGFAAKAMKAVHENMDLNKIDDLMQDITEQQDIAQEISEAFS 150

>CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c|
           (Chromatin-modifying protein 4c) (CHMP4c)
          Length = 232

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 18/55 (32%), Positives = 31/55 (56%)
 Frame = -2

Query: 667 LEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 503
           LE +   TE +  +   AKAMKA+    +++ +D  M +I EQ +  ++I +A S
Sbjct: 96  LENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQDIAQEISEAFS 150

>VPS32_EMENI (Q5B5E0) Vacuolar sorting protein 32|
          Length = 242

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -2

Query: 679 QMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTM--DEINEQTENMKQIQDAL 506
           Q+  +EAA    ET+ A++    AM+ +     ++ VD+T+  D++ EQ     +I  A+
Sbjct: 87  QIYSIEAANINHETLAAMKAAGAAMEKIHNGMTVEQVDETILRDKLREQQAINDEIAIAI 146

Query: 505 SAP 497
           + P
Sbjct: 147 TNP 149

>NU1M_STRCA (O21397) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 324

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = +2

Query: 242 LYISPLHSLGA*SQCHFSLQCSKLILLSRGFLWSRASWLRLAWDR 376
           L+++P  SL   S+    +  +K +LLS GFLW RAS+ R  +D+
Sbjct: 247 LFLNP-SSLNLPSELFPLILATKTLLLSSGFLWVRASYPRFRYDQ 290

>HTR2_NATPH (P42259) Sensory rhodopsin II transducer (HTR-II) (Methyl-accepting|
           phototaxis protein II) (MPP-II)
          Length = 534

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 670 MLEAAKATTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDAL 506
           + E  KA TE +D L    +     +  T +DD+ +T D+++E  E ++   DAL
Sbjct: 376 LAEETKAATEEIDDLIGTVQD----RTQTTVDDIRETSDQVSEGVETVEDTVDAL 426

>AXN_DROME (Q9V407) Axin (Axis inhibition protein) (dAxin) (d-Axin)|
          Length = 745

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 229 SSQPFVHFTSSFTGGLITMPFQLAVQQAHPPQ 324
           S QP   F+SS +GG I++P Q     A PP+
Sbjct: 634 SQQPLASFSSSSSGGSISLPHQPPPLPAKPPE 665

>VPS60_YEAST (Q03390) Vacuolar protein sorting-associated protein VPS60|
          Length = 262

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 649 TTETVDALRTGAKAMKAMQKATNIDDVDKTMDEINEQTENMKQIQDALS 503
           T  T++AL+    AMKA     NID +    DE+ +  E   ++Q+ L+
Sbjct: 140 TMITINALKQTNNAMKAQYGKINIDKLQDMQDEMLDLIEQGDELQEVLA 188


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,143,619
Number of Sequences: 219361
Number of extensions: 1694228
Number of successful extensions: 5281
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 4980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5276
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)