>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + G+PG DG  G +GP
Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGP 1466

>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + G+PG DG  G +GP
Sbjct: 1442 IPGPVGEQGLPGSPGPDGPPGPMGP 1466

>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + GA G+DG  G LGP
Sbjct: 1410 IPGPVGEQGLPGAAGQDGPPGPLGP 1434

>COBA1_RAT (P20909) Collagen alpha-1(XI) chain precursor (Fragment)|
          Length = 482

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 335 VPLPVGEGDVDGAPGRDGHDGDLGP 409
           +P PVGE  + GA G+DG  G LGP
Sbjct: 88  IPGPVGEQGLPGAAGQDGPPGPLGP 112

>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + G+PG DG  G +GP
Sbjct: 1444 IPGPVGEQGLPGSPGPDGPPGPMGP 1468

>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + G+PG DG  G +GP
Sbjct: 1444 IPGPVGEQGLPGSPGPDGPPGPMGP 1468

>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen 2)|
            (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +2

Query: 326  YGDVPLPVGEGDVDGAPGRDGHDGDLGPGRH 418
            +G V  P GE    G PG  G  G +GPGRH
Sbjct: 1053 HGTVRGPPGEKGERGYPGPKGDPGPMGPGRH 1083

>COL14_CAEEL (P18834) Cuticle collagen 14|
          Length = 345

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 338 PLPVGEGDVDGAPGRDGHDGDLGP 409
           P P G+G  DGA G DG  G++GP
Sbjct: 158 PGPAGDGGRDGADGVDGTPGEIGP 181

>HLYS_HYDAT (Q52SK7) Hydralysin|
          Length = 243

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = -1

Query: 601 EMSTWDATLELKLGYNSTIR-AGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYE 425
           + ++W  + E  +   S    +GF K G    +S++A   G      ++EK    +++  
Sbjct: 105 DSTSWSTSAEAGVTMKSEFEVSGFFKTGAEFSVSVTAGKSGS----SSVEKSSTSQIQ-- 158

Query: 424 AAVPPRTKVTVMAIATRSTVDVPFTYWQRDVTIDG 320
             VPPR+KVTV  +       V F   +  +T+DG
Sbjct: 159 VTVPPRSKVTVNMVGIMKKEKVCF---EVPITVDG 190

>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor|
          Length = 1806

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + GA G+DG  G +GP
Sbjct: 1412 IPGPVGEQGLPGAAGQDGPPGPMGP 1436

>RADA_NANEQ (Q74MX9) DNA repair and recombination protein radA|
          Length = 325

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 526 LGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVPP 410
           LG G + +   EFYGEY  G+T   +V H++  +  +PP
Sbjct: 100 LGGGIETAALTEFYGEYGSGKT---QVGHQLAVDVQLPP 135

>NAM7_YEAST (P30771) ATP-dependent helicase NAM7 (EC 3.6.1.-) (Nuclear|
           accomodation of mitochondria 7 protein)
           (Nonsense-mediated mRNA decay protein 1) (Up-frameshift
           suppressor 1)
          Length = 971

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 230 GEDPPHLINSLYLNYHQ*VSVHLINRWRGNNVVSCM---RSRIYLCT*CGIKRSRAILLC 60
           G    H++N L L++H  VS+H  +   G+ V+ C    R  ++L      K    ++L 
Sbjct: 89  GTSSSHIVNHLVLSHHNVVSLH-PDSDLGDTVLECYNCGRKNVFLLGFVSAKSEAVVVLL 147

Query: 59  CAHACLPT 36
           C   C  T
Sbjct: 148 CRIPCAQT 155

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 335  VPLPVGEGDVDGAPGRDGHDGDLGP 409
            +P PVGE  + GAPG+ G  G LGP
Sbjct: 1362 IPGPVGEPGLLGAPGQMGPPGPLGP 1386

>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 338 PLPVGEGDVDGAPGRDGHDGDLGP 409
           P P G     G PG DGHDG  GP
Sbjct: 236 PGPPGPPGCQGVPGCDGHDGQKGP 259

>CTX_PSEAE (P14608) Cytotoxin precursor (Leucocidin)|
          Length = 286

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 592 TWDATLELKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVP 413
           TW  T +LK+G    ++A  P +G GA+I+ + E       G +  K   +    +  + 
Sbjct: 96  TWSVTEQLKVGVEVKVKANIPLVG-GAEITSTVELSLSSTQGASTSKSSNYGASTKVLIS 154

Query: 412 PRT 404
           P +
Sbjct: 155 PHS 157

>CBPY_SCHPO (O13849) Carboxypeptidase Y precursor (EC 3.4.16.5) (CPY)|
          Length = 1002

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 24/99 (24%), Positives = 35/99 (35%)
 Frame = -3

Query: 653 HLPPRTPKRLRLVYEEGGDEHLGRHTRAQARLQFHH*GRVPQARPRRADQHLGRVLR*VQ 474
           H+PP   K   L   EG + H G   +       HH G      P+  + H G   +   
Sbjct: 336 HMPPPPFKHHELEEHEGPEHHRGPEDKE------HHKG------PKDKEHHKGPKDKEHH 383

Query: 473 LGPDHXXXXXXXXXXXXXXXAQDQGHRHGHRDQEHRRRP 357
            GP                  +D+ H  G +D+EH + P
Sbjct: 384 KGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGP 422

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 344 PVGEGDVDGAPGRDGHDGDLGP 409
           P GE    G PGRDG DG  GP
Sbjct: 40  PRGERGPPGPPGRDGEDGPTGP 61

>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 344 PVGEGDVDGAPGRDGHDGDLGP 409
           P GE    G PGRDG DG  GP
Sbjct: 41  PQGERGPPGPPGRDGEDGPPGP 62

>AROK_METTH (O26896) Shikimate kinase (EC 2.7.1.71) (SK)|
          Length = 289

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
 Frame = -1

Query: 571 LKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKV--RHEVEYEAA---VPPR 407
           L +  +++++AG    G  A    SA FYG       ME+++  R  +E +     +P R
Sbjct: 122 LNMAVDASLQAGVSVTG--AYDDASASFYGGLTVTDNMERRIILREPMENQKVLIYMPDR 179

Query: 406 TKVTVMAIATRSTVDVPFTYWQRDVTIDGKVEETLMRDGL 287
             +T  +   R  +  P+        +DG+V   L  +G+
Sbjct: 180 KSLTAQSDVPRMKLLAPWVDMAFREVLDGRVHSALTLNGI 219

>COL8_CAEEL (P18833) Cuticle collagen 8 precursor|
          Length = 282

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 338 PLPVGEGDVDGAPGRDGHDGDLG-PG 412
           P P GEG   G PG DG DG  G PG
Sbjct: 97  PGPPGEGGQSGEPGHDGDDGKPGAPG 122

>C1QC_MOUSE (Q02105) Complement C1q subcomponent subunit C precursor|
          Length = 246

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 350 GEGDVDGAPGRDGHDGDLGP 409
           G   + GAPG+DGHDG  GP
Sbjct: 38  GMPGMPGAPGKDGHDGLQGP 57

>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 350 GEGDVDGAPGRDGHDGDLGP 409
           G   VDGAPG+DG  G  GP
Sbjct: 591 GSSGVDGAPGKDGPRGPTGP 610

>ODO1_MOUSE (Q60597) 2-oxoglutarate dehydrogenase E1 component, mitochondrial|
           precursor (EC 1.2.4.2) (Alpha-ketoglutarate
           dehydrogenase)
          Length = 1019

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 3   PREVSNCFGAEGR*TRMSTTQQNGSRSFYSALRTEIYARTHARYYVVSSPSVDKMNRNLL 182
           P+ V   +    R T          +S  S  R+ +    HA+  V + P+VDK+  + L
Sbjct: 69  PKSVHKSWDIFFRNTNAGAPPGTAYQSPLSLSRSSLATMAHAQSLVEAQPNVDKLVEDHL 128

Query: 183 MIIKIKRIDQVRG 221
            +  + R  QVRG
Sbjct: 129 AVQSLIRAYQVRG 141

>DAP1_HUMAN (P51397) Death-associated protein 1 (DAP-1)|
          Length = 102

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = -1

Query: 586 DATLELKLGYNSTIRAGFPKLGLGAQISISAEFYGEYNWGQTMEKKVRHEVEYEAAVPPR 407
           +  LE K G+   ++AG  ++                + G T E+K + + E+E+  PP+
Sbjct: 6   EGKLETKAGHPPAVKAGGMRI-----------VQKHPHTGDTKEEKDKDDQEWESPSPPK 54

Query: 406 TKVTVMAIATRSTVDVP 356
             V +  +  R   D P
Sbjct: 55  PTVFISGVIARGDKDFP 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,943,392
Number of Sequences: 219361
Number of extensions: 1544220
Number of successful extensions: 6343
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6263
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)