ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15a24 |
|---|---|
| Clone Library Name | barley_pub |
>Y443_METJA (Q57885) Hypothetical protein MJ0443| Length = 227 Score = 42.7 bits (99), Expect = 0.001 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 2/112 (1%) Frame = -2 Query: 491 KCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLS--RAIGRLSGKGGK 318 K D V A GF+ +AL + D YV E+ D++ S R GR+ GK GK Sbjct: 72 KARDIVRAIGRGFN--PEIALKLVSDEYV--LEVIDIEDYASSDNSIRRLKGRVIGKEGK 127 Query: 317 TKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKL 162 ++ IE+ T + + + I+G +++A++++ L+ G+ K Y L Sbjct: 128 SRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGASHAKTYKFL 179
>PLXB2_HUMAN (O15031) Plexin-B2 precursor (MM1)| Length = 1838 Score = 35.0 bits (79), Expect = 0.20 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3 Query: 181 ARSILSLGLYLLGWQKGI-S*VWVTLCSCGFGLVSCCICRFVSPCYEMSY 35 A L L LY+ + K I S + VTL +C FG C +CR +P Y ++ Sbjct: 732 ANETLPLHLYVKSYGKNIDSKLHVTLYNCSFGRSDCSLCRAANPDYRCAW 781
>MAD50_ORYSA (Q9XJ60) MADS-box transcription factor 50 (OsMADS50) (Protein| SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (Protein AGAMOUS-like 20) (RMADS208) Length = 230 Score = 33.9 bits (76), Expect = 0.43 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = -2 Query: 323 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 147 GKT+ IEN T ++ + + +L + V D+ +LI+ SP GK+Y A + Sbjct: 4 GKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ 63 Query: 146 RLAERY 129 + ERY Sbjct: 64 KTIERY 69
>DNAK_PSESM (Q87WP0) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.5 bits (75), Expect = 0.57 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = -2 Query: 428 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 249 +RL D +VD F+ + +L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMSLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 248 G-SFVNIKVARDSLCSLI 198 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>DNAK_PSEU2 (Q4ZNP7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.74 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 428 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 249 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 248 G-SFVNIKVARDSLCSLI 198 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>DNAK_PSE14 (Q48E62) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 638 Score = 33.1 bits (74), Expect = 0.74 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%) Frame = -2 Query: 428 LRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIADTKIHIL 249 +RL D +VD F+ + L+G+ L A+ RL K K + +ST+T + + Sbjct: 234 IRLIDYFVDEFKKESGMNLKGDPL--AMQRLKEAAEKAKIELSSSTQTEVNLPYITADAT 291 Query: 248 G-SFVNIKVARDSLCSLI 198 G + +K++R L SL+ Sbjct: 292 GPKHLVVKISRSKLESLV 309
>Y078_NANEQ (Q74MJ0) UPF0027 protein NEQ078| Length = 477 Score = 32.0 bits (71), Expect = 1.7 Identities = 23/54 (42%), Positives = 31/54 (57%) Frame = -2 Query: 461 LGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIE 300 +GFDI GV LLR + L +D EIKD L + R + G+GGK K +I+ Sbjct: 91 VGFDINCGVRLLRTN-LTID--EIKDRLNLLVNEIFRNVPAGVGEGGKLKLSID 141
>MADS2_ORYSA (Q40702) MADS-box transcription factor 2 (OsMADS2) (RMADS219)| (NMADS1) Length = 209 Score = 32.0 bits (71), Expect = 1.7 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Frame = -2 Query: 332 GKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYS--KLR 159 G+G IENST ++ + + IL I V D+ +++ S AGK+Y + Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPK 61 Query: 158 AVSARLAERY*LSLGHIM 105 +R+ E+Y + G I+ Sbjct: 62 TSLSRILEKYQTNSGKIL 79
>NU124_SCHPO (Q09904) Nucleoporin nup124 (Nuclear pore protein nup124)| Length = 1159 Score = 31.2 bits (69), Expect = 2.8 Identities = 19/53 (35%), Positives = 32/53 (60%) Frame = +1 Query: 334 DRRPMARDRCSPRSVFTSLISKESTYRSSRRSKATPSAMSNPSIKACTKSAHF 492 + +P+++D +P+S F+S +KEST +R+S+ P PS KS+HF Sbjct: 431 EHQPLSKDTEAPKSQFSSSPTKEST---TRKSEVEP-----PSPSKEIKSSHF 475
>AGL13_ARATH (Q38837) Agamous-like MADS-box protein AGL13| Length = 244 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/68 (29%), Positives = 29/68 (42%) Frame = -2 Query: 332 GKGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAV 153 G+G IEN ++ + K +L + V D+ SLI+ S GK+Y Sbjct: 2 GRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVG 61 Query: 152 SARLAERY 129 R ERY Sbjct: 62 VGRTIERY 69
>SOC1_ARATH (O64645) SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein| (Agamous-like MADS-box protein AGL20) Length = 214 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -2 Query: 323 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 147 GKT+ IEN+T ++ + + +L + V D+ SLI+ SP GK+Y + Sbjct: 4 GKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQ 63 Query: 146 RLAERY 129 +RY Sbjct: 64 DTIDRY 69
>AGL14_ARATH (Q38838) Agamous-like MADS-box protein AGL14| Length = 221 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Frame = -2 Query: 323 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVS- 150 GKT+ IEN+T ++ + + +L + V D+ +LI+ SP GK+Y + S Sbjct: 4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSI 63 Query: 149 ARLAERY 129 + ERY Sbjct: 64 PKTVERY 70
>AGL19_ARATH (O82743) Agamous-like MADS-box protein AGL19| Length = 219 Score = 30.4 bits (67), Expect = 4.8 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = -2 Query: 323 GKTKYA-IENSTRTRIVIADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSA 147 GKT+ IEN+T ++ + + +L + V D+ +L++ SP K+Y + A Sbjct: 4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIA 63 Query: 146 RLAERY 129 ERY Sbjct: 64 ATIERY 69
>COAT3_MIMIV (Q5UQN7) Probable capsid protein 3| Length = 2156 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -2 Query: 545 KRVELKTRHDTPDVSNLQKCADFVHAFMLGFDIADGVALLRL 420 K + +K + D SN+QK D +H + FDI D LL++ Sbjct: 1797 KSMYIKHSDEIFDQSNIQKIRDNLHILKINFDITDKQLLLQM 1838
>CBIO2_SULSO (Q97WT4) Putative cobalt import ATP-binding protein cbiO 2| Length = 530 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/78 (28%), Positives = 39/78 (50%) Frame = -2 Query: 485 ADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYA 306 ADF+++ LG +I D + L+ + F D + LR + R R+ GKG + Sbjct: 234 ADFLYS--LGLEIPDYMLFLKKN-----GFRKIDYEYLRKTYTYRPPSRIGGKGEALYAS 286 Query: 305 IENSTRTRIVIADTKIHI 252 ++ T+ I + +TKI + Sbjct: 287 VKVKTKNGIYLINTKISL 304
>END4_SHIFL (Q83QW6) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -2 Query: 509 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRA 348 D S + C D HAF G+D+ + + D I K LRG HL+ A Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLNDA 220
>END4_ECOL6 (Q8FFU0) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 285 Score = 30.0 bits (66), Expect = 6.3 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -2 Query: 509 DVSNLQKCADFVHAFMLGFDIADGVALLRLDDLYVDSFEIKDVKTLRGEHLSRA 348 D S + C D HAF G+D+ + + D I K LRG HL+ A Sbjct: 170 DKSRVGVCIDTCHAFAAGYDLRTPA---ECEKTFADFARIVGFKYLRGMHLNDA 220
>TRFM_MOUSE (Q9R0R1) Melanotransferrin precursor (Membrane-bound| transferrin-like protein p97) (MTf) Length = 738 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -2 Query: 386 DVKTLRGEHLSRAIGRLSG--KGGKTKYAIENSTRTRIVIADTKIHILGSFVNIKVARDS 213 D TLRGE + RA G++ G YA E+ + + V+A + SF ++ Sbjct: 416 DAVTLRGEDIYRA-GKVYGLVPAAGELYAEEDRSNSYFVVAVARRDSSYSFTLDELRGKR 474 Query: 212 LCSLILGSPAG 180 C LGSPAG Sbjct: 475 SCHPYLGSPAG 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,397,050 Number of Sequences: 219361 Number of extensions: 2061095 Number of successful extensions: 5399 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5396 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
