ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15a22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor 31 3.6
2EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral in... 30 6.2

>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor|
          Length = 677

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 559 PWGGAGMKKKGPGSAPEPGATDPYLPG 639
           PWGG G+K + PG    PG   P LPG
Sbjct: 92  PWGGQGLKGQ-PGLPGPPGLPGPSLPG 117



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>EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral integration site|
           2B protein)
          Length = 448

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 309 GSVPSTAEEADMPPPPPL 362
           G+  S++++AD+PPPPPL
Sbjct: 327 GTAVSSSDDADLPPPPPL 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,755,629
Number of Sequences: 219361
Number of extensions: 1672114
Number of successful extensions: 6497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6463
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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