Clone Name | rbasd15a22 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor | 31 | 3.6 | 2 | EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral in... | 30 | 6.2 |
---|
>CO9A2_CHICK (P12108) Collagen alpha-2(IX) chain precursor| Length = 677 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +1 Query: 559 PWGGAGMKKKGPGSAPEPGATDPYLPG 639 PWGG G+K + PG PG P LPG Sbjct: 92 PWGGQGLKGQ-PGLPGPPGLPGPSLPG 117
>EVI2B_HUMAN (P34910) EVI2B protein precursor (Ecotropic viral integration site| 2B protein) Length = 448 Score = 30.0 bits (66), Expect = 6.2 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +3 Query: 309 GSVPSTAEEADMPPPPPL 362 G+ S++++AD+PPPPPL Sbjct: 327 GTAVSSSDDADLPPPPPL 344 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,755,629 Number of Sequences: 219361 Number of extensions: 1672114 Number of successful extensions: 6497 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 5740 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6463 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)