Clone Name | rbasd14l20 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucl... | 32 | 1.6 | 2 | SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... | 30 | 6.0 |
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>DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA| helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu) (Gu-alpha) (DEAD box protein 21) Length = 783 Score = 32.0 bits (71), Expect = 1.6 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 636 ERDGKKENRGGTEN-RCGSRGFRQAREQEGEFR*QRKQSR 520 E +G +E GG R GSRGFR R+ FR QR+ SR Sbjct: 713 ELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752
>SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 546 Score = 30.0 bits (66), Expect = 6.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 61 HRLTNRLQYIANNYHTCLYKRIVHDPIPPSL 153 +RLTN LQ +A ++H K ++ DP P L Sbjct: 486 NRLTNYLQSLAESFHAFYTKHVIVDPENPEL 516 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,803,454 Number of Sequences: 219361 Number of extensions: 1327942 Number of successful extensions: 4126 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 4027 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4120 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)