ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14l20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucl... 32 1.6
2SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 6.0

>DDX21_HUMAN (Q9NR30) Nucleolar RNA helicase 2 (EC 3.6.1.-) (Nucleolar RNA|
           helicase II) (Nucleolar RNA helicase Gu) (RH II/Gu)
           (Gu-alpha) (DEAD box protein 21)
          Length = 783

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 636 ERDGKKENRGGTEN-RCGSRGFRQAREQEGEFR*QRKQSR 520
           E +G +E  GG    R GSRGFR  R+    FR QR+ SR
Sbjct: 713 ELEGPREGYGGFRGQREGSRGFRGQRDGNRRFRGQREGSR 752



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>SYR_THEMA (Q9X0H8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 546

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 61  HRLTNRLQYIANNYHTCLYKRIVHDPIPPSL 153
           +RLTN LQ +A ++H    K ++ DP  P L
Sbjct: 486 NRLTNYLQSLAESFHAFYTKHVIVDPENPEL 516


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,803,454
Number of Sequences: 219361
Number of extensions: 1327942
Number of successful extensions: 4126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4120
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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