>MIS3_SCHPO (O74777) Ribosomal RNA assembly protein mis3|
          Length = 327

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 44/104 (42%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
 Frame = -2

Query: 623 IKRELAKNPALATESWDRFLPXXXXXXXXXXX-XXXXXXKQYTPFPPPQQPSKIDRELES 447
           IKRELAK+P LA ESWDRFLP                  K+YTPFPP Q PSK+D E+ES
Sbjct: 218 IKRELAKDPTLANESWDRFLPQFKKRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIES 277

Query: 446 GEYFLSDKVKAAXXXXXXXXXXXXXXXXXXXXXEAAFVPPKENT 315
           GEYFL  + K                         AF+PP+E++
Sbjct: 278 GEYFLKKEEKERKKRAEKKEQQKEKKKEKEKERMKAFIPPEESS 321

>HRB2_MOUSE (Q8BGA5) HIV-1 Rev-binding protein 2 homolog|
          Length = 380

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 53/142 (37%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
 Frame = -2

Query: 623 IKRELAKNPALATESWDRFLPXXXXXXXXXXXX--XXXXXKQYTPFPPPQQPSKIDRELE 450
           IKRELAK+  L ++SW+RFLP                   K+YTPFPPPQ  S+ID+EL 
Sbjct: 223 IKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKSVKKEYTPFPPPQPESQIDKELA 282

Query: 449 SGEYFLSDKVKAAXXXXXXXXXXXXXXXXXXXXXEAAFVPPKENTAGLSESAKSSNDNNE 270
           SGEYFL    K                         AF+PPKE  A   + A S+    +
Sbjct: 283 SGEYFLKASQKKRQKMEAIKAKQAEALTKRQEERNKAFIPPKEKPAVKPKEA-STETKID 341

Query: 269 IADITKSLKK-KAKKFRNSEAE 207
           +A I + +KK K KK     AE
Sbjct: 342 VAAIKEKVKKAKTKKLGALTAE 363

>HRB2_HUMAN (Q13601) HIV-1 Rev-binding protein 2 (Rev-interacting protein 1)|
           (Rip-1)
          Length = 380

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 49/139 (35%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
 Frame = -2

Query: 623 IKRELAKNPALATESWDRFLPXXXXXXXXXXXX--XXXXXKQYTPFPPPQQPSKIDRELE 450
           IKRELAK+  L ++SW+RFLP                   K+YTPFPPPQ  S+ID+EL 
Sbjct: 223 IKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKKTVKKEYTPFPPPQPESQIDKELA 282

Query: 449 SGEYFLSDKVKAAXXXXXXXXXXXXXXXXXXXXXEAAFVPPKENTAGLSESAKSSNDNNE 270
           SGEYFL    K                         AF+PPKE         K    + E
Sbjct: 283 SGEYFLKANQKKRQKMEAIKAKQAEAISKRQEERNKAFIPPKEKPI-----VKPKEASTE 337

Query: 269 IADITKSLKKKAKKFRNSE 213
                 S+K+K KK +N +
Sbjct: 338 TKIDVASIKEKVKKAKNKK 356

>YCF9_YEAST (P25586) Hypothetical 37.2 kDa protein in CHA1-PRD1 intergenic|
           region
          Length = 316

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 36/72 (50%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = -2

Query: 623 IKRELAKNPALATESWDRFLPXXXXXXXXXXXXXXXXXKQ---YTPFPPPQQPSKIDREL 453
           IKRELAK P LA E W RFLP                  +   YTPFPP Q P K+D E+
Sbjct: 205 IKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRNVEKKVYTPFPPAQLPRKVDLEI 264

Query: 452 ESGEYFLSDKVK 417
           ESGEYFLS + K
Sbjct: 265 ESGEYFLSKREK 276

>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B) (HSP27 estrogen response element-TATA
           box-binding protein) (HSP27 ERE-TATA-binding protein)
          Length = 915

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = -3

Query: 565 SRTLRKRMSSKRSPIPRRRNNTHPFRHLSSLA----RLIVNWXXXXXXXXXXXRQLRNIK 398
           SR  R  +S  +   PR+  ++     +   +    R+   W           R+    +
Sbjct: 596 SREKRSVVSFDKVKEPRKSRDSESHSRVRERSEREQRMQAQWEREERERLEIARERLAFQ 655

Query: 397 RSRISNQRNQKKREEREKLHLFHQRR 320
           R R+  +R +++R ERE++H+ H+RR
Sbjct: 656 RQRLERERMERERLERERMHVEHERR 681

>PRIM_BACHD (Q9KD44) DNA primase (EC 2.7.7.-)|
          Length = 599

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 415 QLRNIKRSRISNQRNQKKREE-REKLHLFHQRRILLGYLNLPKVVMTTMKLLIS 257
           Q R  +  +  NQ +Q K    R+K H F Q+R+L  Y N  ++++  M   +S
Sbjct: 428 QYRIYREMKRQNQVSQGKTNTVRQKKHDFEQKRLLPAYQNAERILLAHMMRNVS 481

>EGL27_CAEEL (Q09228) Egg-laying defective protein 27|
          Length = 1129

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = -3

Query: 379 QRNQKKREEREKLHLFHQRRILLGYLNLPKVVMTTMKLLISQNP*RKRQRNSE 221
           +++ K++EER+K+HL +QR            +  + K+ I QN  +K Q+ S+
Sbjct: 762 EKSIKEKEERKKVHLQNQR------------IQDSEKVAIQQNQIKKEQQQSQ 802

>ARS2_DROME (Q9V9K7) Arsenite-resistance protein 2 homolog|
          Length = 943

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 323 ENTAGLSESAKSSNDNNEIADITKSLKKKAKK-FRNSEAEGNVKIESYVASNEE 165
           EN+A   E A+ S D++   +  +  KKK KK  RNS  + +   ES  +S+EE
Sbjct: 337 ENSAPKKELAEDSKDSDSKPEDKQLNKKKTKKRKRNSSDDDSSSSESSSSSDEE 390


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,725,464
Number of Sequences: 219361
Number of extensions: 956401
Number of successful extensions: 3753
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3742
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)