>RRP3_HORVU (O48609) Plastid-specific 30S ribosomal protein 3, chloroplast|
           precursor (PSRP-3)
          Length = 181

 Score =  205 bits (521), Expect(2) = 3e-57
 Identities = 103/124 (83%), Positives = 103/124 (83%)
 Frame = -1

Query: 524 TXXXXXXAVEAGEPYFXXXXXXXXXXXXXXXAVVESEEYKVEVPEKQDPMLVLKFIWMEK 345
           T      AVEAGEPYF               AVVESEEYKVEVPEKQDPMLVLKFIWMEK
Sbjct: 51  TAAAAAAAVEAGEPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEK 110

Query: 344 NIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIIN 165
           NIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIIN
Sbjct: 111 NIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIIN 170

Query: 164 LWQQ 153
           LWQQ
Sbjct: 171 LWQQ 174



 Score = 37.4 bits (85), Expect(2) = 3e-57
 Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
 Frame = -3

Query: 675 MLPMSVHPATTPG----PRVAAPR--LPAQTFHTLLLFQPRPP 565
           MLPMSVHPATTP     PRV+ PR   P+ +   + L   RPP
Sbjct: 1   MLPMSVHPATTPALASRPRVSLPRPSTPSSSSSLVHLKSRRPP 43

>RRP3_SPIOL (P82412) Plastid-specific 30S ribosomal protein 3, chloroplast|
           precursor (PSRP-3)
          Length = 179

 Score =  147 bits (372), Expect = 2e-35
 Identities = 69/92 (75%), Positives = 76/92 (82%)
 Frame = -1

Query: 428 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 249
           +V  E+ KV V     P LVLKFIWMEKNIG+ALDQ +PG G++PLSPYYFWPRKDAWEE
Sbjct: 81  LVNKEKLKVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEE 140

Query: 248 LRAKLEEKEWISQKQMIILLNQATDIINLWQQ 153
           L+  LE K WISQKQMIILLNQATDIINLWQQ
Sbjct: 141 LKVLLENKPWISQKQMIILLNQATDIINLWQQ 172

>RRP31_ARATH (Q9SX22) Plastid-specific 30S ribosomal protein 3-1, chloroplast|
           precursor (PSRP-3 1)
          Length = 166

 Score =  135 bits (339), Expect = 2e-31
 Identities = 63/85 (74%), Positives = 74/85 (87%)
 Frame = -1

Query: 407 KVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEE 228
           KV  P+++   +VLKF+WMEKNIG+ LDQ VPG G+IPLSPY+FWPRKDAWEEL++ LE 
Sbjct: 75  KVVKPDEKS-RVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEA 133

Query: 227 KEWISQKQMIILLNQATDIINLWQQ 153
           K WISQK+MIILLNQATDIINLWQQ
Sbjct: 134 KPWISQKKMIILLNQATDIINLWQQ 158

>RRP32_ARATH (Q9LFV0) Plastid-specific 30S ribosomal protein 3-2, chloroplast|
           precursor (PSRP-3 2)
          Length = 183

 Score =  129 bits (323), Expect = 1e-29
 Identities = 56/87 (64%), Positives = 70/87 (80%)
 Frame = -1

Query: 416 EEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAK 237
           ++ +V V   + P +VLKF+WM+K+IG+ALD M+PG G+IPLSPYYFWPRKDAWEEL+  
Sbjct: 90  KKMRVLVKPLEKPKVVLKFVWMQKDIGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTL 149

Query: 236 LEEKEWISQKQMIILLNQATDIINLWQ 156
           LE K WIS+   + LLNQATDIINLWQ
Sbjct: 150 LESKPWISELHRVFLLNQATDIINLWQ 176

>RRP3_PORPU (P51351) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 41/72 (56%), Positives = 57/72 (79%)
 Frame = -1

Query: 368 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILL 189
           LK +W+E NI IA+DQ+V G G+ PL+ Y+FWPR DAWEEL+A+LE K WI+++  I LL
Sbjct: 6   LKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRIELL 64

Query: 188 NQATDIINLWQQ 153
           N+ T++IN WQ+
Sbjct: 65  NKTTEVINYWQE 76

>RRP3_MESVI (Q9MUN2) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 123

 Score = 95.1 bits (235), Expect = 2e-19
 Identities = 41/73 (56%), Positives = 54/73 (73%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           VLKF+W+EKN+ + +DQ V   G+ P++ Y+FWPRKDAWEEL+  L  K WIS  + I L
Sbjct: 22  VLKFLWLEKNLAVTVDQ-VTNRGNSPITEYFFWPRKDAWEELKDALANKPWISYDESIAL 80

Query: 191 LNQATDIINLWQQ 153
           LNQ TD+IN WQ+
Sbjct: 81  LNQTTDVINYWQE 93

>RRP3_PROMP (Q7V048) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 37/81 (45%), Positives = 60/81 (74%)
 Frame = -1

Query: 395 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWI 216
           P+  +   ++K +W+  N+ +A+DQ+V G GS PL+ YYFWPR DAWE+L+++LE K WI
Sbjct: 24  PKPDEGRFIIKILWLPDNVALAVDQIVGG-GSSPLTAYYFWPRDDAWEKLKSELENKSWI 82

Query: 215 SQKQMIILLNQATDIINLWQQ 153
           +  + + +LN+AT++IN WQ+
Sbjct: 83  TDNERVEILNKATEVINYWQE 103

>RRP3_ANASP (Q8YSC1) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 99

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 38/73 (52%), Positives = 57/73 (78%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           +LK +W+++N+ +A+DQ+V G G+ PL+ Y+FWPR DAWEEL+ +LE K WIS    + L
Sbjct: 5   ILKILWLDENVALAVDQVV-GKGTSPLTKYFFWPRNDAWEELKKELESKHWISDLDRVEL 63

Query: 191 LNQATDIINLWQQ 153
           LN+AT++IN WQ+
Sbjct: 64  LNKATEVINYWQE 76

>RRP3_GUITH (O78422) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 37/76 (48%), Positives = 58/76 (76%)
 Frame = -1

Query: 380 PMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQM 201
           P   LK +W++ N+ +A+DQ++ G G+ PL+ Y+FWPR DAWE+++A+LE K WI +K+ 
Sbjct: 2   PKFTLKVLWLDNNVAVAVDQII-GNGTSPLTCYFFWPRNDAWEQVKAELESKPWIEEKER 60

Query: 200 IILLNQATDIINLWQQ 153
           I LLN+ T++IN WQ+
Sbjct: 61  IELLNKTTELINCWQE 76

>RRP3_SYNEL (P59327) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 108

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 40/72 (55%), Positives = 59/72 (81%)
 Frame = -1

Query: 368 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILL 189
           L+ +W+EK++ IA+DQ+V G G+ PL+ Y+FWPR DAWE L+A+LE+K WI++ + I LL
Sbjct: 15  LRVLWLEKDVAIAVDQIV-GKGTSPLTSYFFWPRTDAWELLKAELEKKSWITEAERIELL 73

Query: 188 NQATDIINLWQQ 153
           N+AT+IIN WQ+
Sbjct: 74  NRATEIINYWQE 85

>RRP3_SYNP7 (O05161) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 112

 Score = 92.4 bits (228), Expect = 1e-18
 Identities = 37/72 (51%), Positives = 56/72 (77%)
 Frame = -1

Query: 368 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILL 189
           +K +W+ +N+ IA+DQ+V G  + PL+ YYFWPR DAWE+L+ +LE K WI++ + + LL
Sbjct: 19  IKILWLNENVAIAVDQVV-GKATSPLTAYYFWPRHDAWEQLKTELESKSWITEAERVELL 77

Query: 188 NQATDIINLWQQ 153
           NQAT++IN WQ+
Sbjct: 78  NQATEVINYWQE 89

>RRP3_PROMA (Q7VA74) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 91.7 bits (226), Expect = 2e-18
 Identities = 36/81 (44%), Positives = 60/81 (74%)
 Frame = -1

Query: 395 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWI 216
           P+  +   +LK +W+  N+ +A+DQ+V G G+ PL+ Y+FWPR+DAWE L+ +LE+K WI
Sbjct: 24  PKADEGRFLLKILWLPDNVALAVDQIVGG-GTSPLTAYFFWPREDAWETLKTELEDKAWI 82

Query: 215 SQKQMIILLNQATDIINLWQQ 153
           +  + + +LN+AT++IN WQ+
Sbjct: 83  TDNERVEVLNKATEVINYWQE 103

>RRP3_EUGST (Q9BAC0) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 35/73 (47%), Positives = 57/73 (78%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           +LKF+W+EK++ + LDQ + G  + P++ ++FWP+ DAWEE++  LE+K WI Q +++IL
Sbjct: 5   ILKFLWLEKSVAVGLDQKI-GDRTTPVTEFFFWPQHDAWEEMKNFLEDKSWIDQSEVVIL 63

Query: 191 LNQATDIINLWQQ 153
           LNQ T++IN WQ+
Sbjct: 64  LNQITEVINYWQE 76

>RRP3_SYNY3 (Q55385) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 112

 Score = 91.3 bits (225), Expect = 3e-18
 Identities = 37/72 (51%), Positives = 57/72 (79%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           +LK +W+++N+ IA+DQ+V G G+ PL+ Y+FWPR DAW++L+ +LE K WI++   I +
Sbjct: 15  ILKVLWLDQNVAIAVDQIV-GKGTSPLTSYFFWPRADAWQQLKDELEAKHWIAEADRINV 73

Query: 191 LNQATDIINLWQ 156
           LNQAT++IN WQ
Sbjct: 74  LNQATEVINFWQ 85

>RRP3_PROMM (Q7V5U0) Probable 30S ribosomal protein PSRP-3 (Ycf65-like protein)|
          Length = 126

 Score = 89.7 bits (221), Expect = 7e-18
 Identities = 36/81 (44%), Positives = 58/81 (71%)
 Frame = -1

Query: 395 PEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWI 216
           P+  +   +LK +W+  N+ +A+DQ+V G G  PL+ Y+FWPR+DAWE L+ +LE K WI
Sbjct: 24  PKADEGRFLLKILWLPDNVALAVDQIVGG-GPSPLTAYFFWPREDAWETLKGELEGKSWI 82

Query: 215 SQKQMIILLNQATDIINLWQQ 153
           +  + + +LN+AT++IN WQ+
Sbjct: 83  TDNERVEVLNKATEVINYWQE 103

>RRP3_EUGGA (Q9BAC5) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 103

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 37/74 (50%), Positives = 54/74 (72%)
 Frame = -1

Query: 374 LVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMII 195
           L+LKF+W+EK+I + LDQ V G    PL+ ++FWP+KDAWEE++  LE + WI+Q   + 
Sbjct: 5   LILKFLWLEKSIAVCLDQKV-GDSITPLTEFFFWPQKDAWEEMKNFLESQSWITQSDSVN 63

Query: 194 LLNQATDIINLWQQ 153
           LLN  T++IN WQ+
Sbjct: 64  LLNNITEVINFWQE 77

>RRP3_EUGVI (Q9BAB9) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 37/73 (50%), Positives = 55/73 (75%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           VLKF+W+++++ ++LDQ + G    PL+ +YFWP+ DAWEE+R  LE K WI+  + I+L
Sbjct: 5   VLKFLWLQRSVAVSLDQKI-GDNVSPLTEFYFWPQCDAWEEMRNFLESKSWINSSESILL 63

Query: 191 LNQATDIINLWQQ 153
           LNQ T+IIN WQ+
Sbjct: 64  LNQVTEIINDWQE 76

>RRP3_GRATL (Q6B913) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 99

 Score = 86.3 bits (212), Expect = 8e-17
 Identities = 36/71 (50%), Positives = 51/71 (71%)
 Frame = -1

Query: 365 KFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLN 186
           K +W+E NI IA+D  + G    PL+ Y+FWPR DAWEEL+ +LE K WI++ + + LLN
Sbjct: 7   KILWLENNIAIAIDYNI-GNNKSPLTSYFFWPRNDAWEELKIELESKPWINKNEKVDLLN 65

Query: 185 QATDIINLWQQ 153
           + T+IIN WQ+
Sbjct: 66  KTTEIINFWQE 76

>RRP3_EUGMU (Q9BAC3) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 28/73 (38%), Positives = 50/73 (68%)
 Frame = -1

Query: 371 VLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIIL 192
           VLKF+ ++K I + LDQ +      PL+ Y+FWP++DAWE+++  ++  +WI  K  + +
Sbjct: 5   VLKFLLIDKVIAVCLDQKISNERLNPLTEYFFWPQRDAWEDMKNFIDNNDWIDPKDAVNI 64

Query: 191 LNQATDIINLWQQ 153
           LN+ T++IN W++
Sbjct: 65  LNRITEVINFWEE 77

>RRP3_CYACA (Q9TLZ0) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 30/72 (41%), Positives = 50/72 (69%)
 Frame = -1

Query: 368 LKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILL 189
           +K +W+  NI IA+D+++ G    P++ YYFWPR DAWE+L+ +L+ +  +  K  +++L
Sbjct: 6   IKVLWLRNNIAIAVDRLI-GDSLFPMTYYYFWPRTDAWEQLKIELDSQPGLFAKDKVVIL 64

Query: 188 NQATDIINLWQQ 153
           NQ T II+ WQ+
Sbjct: 65  NQVTRIIDYWQE 76

>RRP3_EUGMY (Q9BAC2) Probable plastid-specific 30S ribosomal protein 3 (PSRP-3)|
          Length = 101

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
 Frame = -1

Query: 365 KFIW----MEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMI 198
           KF+W    +E  I I LDQ +    S P++ Y+FWP+ DAW+EL   LE K WI+    I
Sbjct: 3   KFVWKVVCLENKIAICLDQQLADKTS-PVTEYFFWPQSDAWDELNKLLESKPWITLSNRI 61

Query: 197 ILLNQATDIINLWQQ 153
            +LN  TD+IN W +
Sbjct: 62  FVLNILTDLINYWDE 76

>GRLF1_MOUSE (Q91YM2) Glucocorticoid receptor DNA-binding factor 1 (Fragment)|
          Length = 1337

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 669  PMSVHPATTPG-PRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQP 526
            P+S  P   PG P   AP +P  T  T    QP PPQ    TP    QP
Sbjct: 1278 PISEPPGAAPGSPSAMAPTVPFLT-STPATSQPSPPQSPPPTPQSPMQP 1325

>QUEA_VIBPA (Q87S37) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 350

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -1

Query: 428 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 249
           V E++EY  E+  + D +  LKF     N    +  ++  +G +PL PY   P +DA +E
Sbjct: 109 VGENDEYSAEMVARHDALFELKF-----NSDKTVLDILEEIGHMPLPPYIDRPDEDADKE 163

>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)|
          Length = 392

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 672 LPMSVHPATTPGPRVAAPRLPAQTFHTLLLFQPRPPQEQE-ATPSLAPQP 526
           +P+S  PA    P  AAP LP    H  L   P PP  Q  A P+  PQP
Sbjct: 48  VPVSPQPAPPSPP--AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQP 95

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 678 TMLPMSVHPATTPGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQP 526
           T LP+   P  +P P V +P  P         + P PP      PS +P P
Sbjct: 336 TYLPLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSPPPPSFSPPP 386

>CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 protein)|
          Length = 333

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -3

Query: 684 NYTMLPMSVHPATTPGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQ 529
           NY   P S    + P P+ A   LP Q  +T       PPQ+Q+  P+ APQ
Sbjct: 15  NYYRQPSSTPGVSNPNPQ-ANQFLPPQPSNTTQTPGGYPPQQQQRPPTGAPQ 65

>TAL_HAEIN (P45055) Transaldolase (EC 2.2.1.2)|
          Length = 316

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 428 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGV 306
           +V   EYK EV  K  P+   +F W   +  +A++++  G+
Sbjct: 258 LVRKLEYKGEVKAKPQPLTEAEFYWQHNSDAMAVEKLAEGI 298

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
 Frame = -3

Query: 654 PATTPGPRVAAPRLPAQTFHTLLLFQPRPPQ-----------EQEATPSLAPQP 526
           P TTP P   A   P  T  +    Q +PPQ           +Q+ TPS AP P
Sbjct: 517 PLTTPSPSPTAAAAPTTTTLSPPPTQQQPPQSAAPAPSPLLPQQQPTPSAAPAP 570

>QUEA_VIBF1 (Q5E3D1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC|
           5.-.-.-) (Queuosine biosynthesis protein queA)
          Length = 350

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/58 (31%), Positives = 34/58 (58%)
 Frame = -1

Query: 422 ESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGVGSIPLSPYYFWPRKDAWEE 249
           E++E++ E+  + D +  ++F   +K + I LD+    +G +PL PY   P +DA +E
Sbjct: 111 ENQEHEAEMVARHDTLFEIRFTSDKKVLDI-LDE----IGHMPLPPYIDRPDEDADKE 163

>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)|
          Length = 1244

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -3

Query: 669  PMSVHPATTPGPRVAAPRLPAQTFHTLLLFQPRPPQEQEATPSLAPQP 526
            P    PATTP P V  P  P   F      QP PP     +P+  P P
Sbjct: 863  PWPPPPATTPFPAVVQP-YPLPVFSPRGGPQPLPPAPTSVSPATFPSP 909

>TAL_HAEI8 (Q4QLG9) Transaldolase (EC 2.2.1.2)|
          Length = 317

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 428 VVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPGV 306
           ++   EYK EV  K  P+   +F W   +  +A++++  G+
Sbjct: 259 LIRKLEYKGEVKAKPQPLTEAEFYWQHNSDAMAVEKLAEGI 299

>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor|
          Length = 1943

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = -3

Query: 681  YTMLPMSVHPATTPGPRVAAPRLPAQTFHTLLLFQP----RPPQEQEATPSLAPQP 526
            +T  P+ + P   P P++    LP  T  T  L  P     PP  +   P L PQP
Sbjct: 1763 FTTFPLPLSPPNPPPPQLVTFSLPISTPPTSSLPLPPPLSLPPPPRPPAPRLFPQP 1818

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 654 PATTPGPRVAAPRL-PAQTFHTLLLFQPRPPQEQEATPSLAPQ 529
           PA + GP+  A  L P Q   T LL Q  PP + +  P  +PQ
Sbjct: 725 PALSNGPQTQAQLLQPLQALQTQLLPQALPPPQPQLQPPPSPQ 767


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,871,834
Number of Sequences: 219361
Number of extensions: 1255252
Number of successful extensions: 4123
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4079
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)