ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd15a14 |
|---|---|
| Clone Library Name | barley_pub |
>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase| Length = 407 Score = 60.1 bits (144), Expect = 3e-09 Identities = 27/45 (60%), Positives = 34/45 (75%) Frame = -3 Query: 499 MCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIGSLVRATAL 365 MC+D VQ++TFDSYLYK VVP NP+ +K+ TIGSL+R AL Sbjct: 361 MCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405
>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase| Length = 391 Score = 35.4 bits (80), Expect = 0.088 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = -3 Query: 499 MCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIGSL 383 +C D VQRMTF+SY+ K++ P++++K+ + L Sbjct: 344 LCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLAHL 382
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 33.1 bits (74), Expect = 0.44 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%) Frame = +2 Query: 20 TSRSRGTNMNKKLETLVYTTFIHI-SNIGV--------LQQSRRTVLKSEHHRTRKWDRF 172 +S R ++ N T + + I SN+GV L +RR V+ T +W+ Sbjct: 348 SSSGRNSSSNSNTSTSSTSNGVTITSNVGVNGASPQERLMAARRAVV------TMQWNTH 401 Query: 173 DQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAASSNPSRMSG---TFPVCRRSQG 343 PLP + + S+ + S SN + S + PV ++ Sbjct: 402 LGRRGRSFAPLPTGGMSIATSAASSSTSSASSSSSMNDGSNAKKTSDAAVSLPVGQQPAA 461 Query: 344 ELPHLPAQRGGPDE 385 E PH+P GGP + Sbjct: 462 EQPHVPTAPGGPSQ 475
>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 32.0 bits (71), Expect = 0.97 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2 Query: 230 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 388 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2 Query: 230 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 388 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 30.0 bits (66), Expect = 3.7 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2 Query: 230 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 388 LKSVR+A L + S +P R+S V QG +P A +R G DEA Sbjct: 17 LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 4.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 150 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 320 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 4.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 150 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 320 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 4.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 150 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 320 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 4.8 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 150 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 320 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Mannosyltransferase- Length = 464 Score = 28.9 bits (63), Expect = 8.2 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 144 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 278 +TV + K PLD +H LF+ + S +PF R + P DP Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 233 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 355 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 28.9 bits (63), Expect = 8.2 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +2 Query: 110 QQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAAS 289 ++SR + S H R W + DQD S ST S+ S +D + RS A S Sbjct: 483 RRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSY---RSKSHSRSDSRGSSRSRAVS 539 Query: 290 SNPSR 304 + SR Sbjct: 540 KSSSR 544
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 233 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 355 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.9 bits (63), Expect = 8.2 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +3 Query: 159 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 320 NG G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,100,723 Number of Sequences: 219361 Number of extensions: 1207149 Number of successful extensions: 3638 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3547 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3638 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
