ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd14l10 |
|---|---|
| Clone Library Name | barley_pub |
>SAP_HUMAN (P07602) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B-Val; Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta- Length = 524 Score = 52.4 bits (124), Expect = 1e-06 Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 8/138 (5%) Frame = -3 Query: 635 KKCVELVDSY-ATLLFAKIAEIXPEEFCKRNGLCRXNAL------LSGVRSESTCVFCHH 477 ++C E+VD+Y +++L + E+ PE C LC L ++ + C C Sbjct: 355 EECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKK 414 Query: 476 LMDEVLSKLKDPDAEFEIIQILLKECXKI-EGHEQQCKRLVLQYIPLILVNGXKFLEKND 300 L+ + L+ + EI+ L K C + + +++QC + V +Y P+++ + ++ + Sbjct: 415 LVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSF 474 Query: 299 ICTIVQACDAGKKXVLGS 246 +C + AC + K +LG+ Sbjct: 475 VCLKIGACPSAHKPLLGT 492 Score = 35.8 bits (81), Expect = 0.11 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Frame = -3 Query: 494 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKI--EGHEQQCKRLVLQYIPLIL-VNG 324 C C ++ LKD E EI+ L K C + CK +V Y+P+IL + Sbjct: 63 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 122 Query: 323 XKFLEKNDICTIVQACDAGKKXVLGSFSEEGLLXDE*RQKDYTEPRKP 180 + ++C+ + C++ +K + ++ L ++ + D TE P Sbjct: 123 GEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAP 170
>SAP_BOVIN (P26779) Proactivator polypeptide precursor [Contains: Saposin A| (Protein A); Saposin B (Sphingolipid activator protein 1) (SAP-1) (Cerebroside sulfate activator) (CSAct) (Dispersin) (Sulfatide/GM1 activator); Saposin C (Co-beta-glucosidase) (A Length = 525 Score = 50.1 bits (118), Expect = 6e-06 Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 8/138 (5%) Frame = -3 Query: 635 KKCVELVDSYA-TLLFAKIAEIXPEEFCKRNGLCRXNALLSGV------RSESTCVFCHH 477 ++C E+VD+Y ++L + E PE C LC L + + C C Sbjct: 356 EQCQEVVDTYGRSILSILLDEASPELVCSMLHLCSSRGLPAATVRVMPRKDGGFCEVCKK 415 Query: 476 LMDEVLSKLKDPDAEFEIIQILLKECXKI-EGHEQQCKRLVLQYIPLILVNGXKFLEKND 300 L+ + L+ + +I+ L K C + + + +QC + V +Y P+++ + ++ + Sbjct: 416 LVGYLDRNLEKNSTKEQILAALEKGCSFLPDQYRKQCDQFVTEYEPVLIEILVEVMDPSF 475 Query: 299 ICTIVQACDAGKKXVLGS 246 +C + AC A K +LG+ Sbjct: 476 VCLKIGACPAAHKPLLGA 493 Score = 33.5 bits (75), Expect = 0.54 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Frame = -3 Query: 494 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKIE--GHEQQCKRLVLQYIPLIL--VN 327 C C ++ + LKD E EI+ L + C + CK +V Y+P+IL + Sbjct: 63 CDICKDVITAAGNLLKDNATEQEILMYLERTCDWLPKPNMSASCKEIVDSYLPVILDMIK 122 Query: 326 GXKFLEKNDICTIVQACDAGKKXVLGSFSEEGLLXDE*RQKDYTEPRKP 180 G + ++C+ + C++ +K + ++ L ++ + D E P Sbjct: 123 G-QMSHPGEVCSALNLCESLQKHLAELNHQKQLESNQIPELDMAEVVAP 170
>SAP_CHICK (O13035) Proactivator polypeptide precursor [Contains: Saposin A;| Saposin B; Saposin C; Saposin D] Length = 518 Score = 42.7 bits (99), Expect = 9e-04 Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%) Frame = -3 Query: 539 CRXNALLSGVRSESTCVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKI--EGHEQQCK 366 C+ N + C C L+ V LKD E EI L K C + +G +CK Sbjct: 49 CQQNVWSKPAVNSIPCDLCKELVTVVGKVLKDNGTEDEIRSYLEKRCEFLPDQGLASECK 108 Query: 365 RLVLQYIPLIL-VNGXKFLEKNDICTIVQACDAGKKXVLGSFSEEGLLXDE*RQKDYTEP 189 +V Y+P+I+ + +F + +C+ + C + +K + ++ L ++ + D++E Sbjct: 109 EIVDSYLPVIMDMIKEEFDKPEVVCSALSLCQSLQKHLAAMKLQKQLQSNKIPELDFSEL 168 Query: 188 RKP 180 P Sbjct: 169 TSP 171 Score = 39.3 bits (90), Expect = 0.010 Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Frame = -3 Query: 632 KCVELVDSYATLLFAKIAEIX-PEEFCKRNGLCRXNAL----LSGVRSESTCVFCHHLMD 468 +C + ++ Y L + E PE C C N + + C C ++ Sbjct: 352 QCKDFIEVYGQALIDMLLEATNPEAVCVMLKCCAANKPPQQPVVVKPAGGFCDICKMIVA 411 Query: 467 EVLSKLKDPDAEFEIIQILLKECXKI-EGHEQQCKRLVLQYIPLILVNGXKFLEKNDICT 291 +L+ EI +L K C + E QC + V QY P+++ + ++ +CT Sbjct: 412 YADKELEKNATTTEIEALLEKVCHFLPESVSDQCVQFVEQYEPVVVQLLAEMMDPTFVCT 471 Query: 290 IVQACDAGKKXVLG 249 + C A KK +LG Sbjct: 472 KLGVCGAAKKPLLG 485 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Frame = -3 Query: 500 STCVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKIEGH-EQQCKRLVLQYIPLILVNG 324 S C C ++ EV L+ E EI+ + C + + QCK + Y ++ Sbjct: 309 SVCEICETMVKEVTGLLESNKTEEEIVHEMEVVCYLLPASVKDQCKDFIEVYGQALIDML 368 Query: 323 XKFLEKNDICTIVQACDAGK 264 + +C +++ C A K Sbjct: 369 LEATNPEAVCVMLKCCAANK 388
>SAP_MOUSE (Q61207) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 557 Score = 40.8 bits (94), Expect = 0.003 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 39/168 (23%) Frame = -3 Query: 632 KCVELVDSYA-TLLFAKIAEIXPEEFCKRNGLCRXN------------ALLSGVRSEST- 495 KC E+V ++ +LL I E+ P C GLC A++S + E T Sbjct: 358 KCQEVVGTFGPSLLDIFIHEVNPSSLCGVIGLCAARPELVEALEQPAPAIVSALLKEPTP 417 Query: 494 ------------------------CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKI- 390 C C L+ + L+ + EI+ L K C + Sbjct: 418 PKQPAQPKQSALPAHVPPQKNGGFCEVCKKLVLYLEHNLEKNSTKEEILAALEKGCSFLP 477 Query: 389 EGHEQQCKRLVLQYIPLILVNGXKFLEKNDICTIVQACDAGKKXVLGS 246 + +++QC V +Y PL+L + ++ +C+ + C + K +LG+ Sbjct: 478 DPYQKQCDDFVAEYEPLLLEILVEVMDPGFVCSKIGVCPSAYKLLLGT 525 Score = 34.3 bits (77), Expect = 0.32 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = -3 Query: 494 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKIEGH--EQQCKRLVLQYIPLIL--VN 327 C C ++ E + LKD + EI+ L K C I CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATQEEILHYLEKTCEWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 326 GXKFLEKNDICTIVQACDA 270 G + ++C+ + C + Sbjct: 123 G-EMSNPGEVCSALNLCQS 140
>SAP_RAT (P10960) Sulfated glycoprotein 1 precursor (SGP-1) (Prosaposin)| Length = 554 Score = 38.5 bits (88), Expect = 0.017 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = -3 Query: 494 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKI-EGHEQQCKRLVLQYIPLILVNGXK 318 C C L+ + L+ + EI+ L K C + + +++QC V +Y PL+L + Sbjct: 439 CEVCKKLVIYLEHNLEKNSTKEEILAALEKGCSFLPDPYQKQCDEFVAEYEPLLLEILVE 498 Query: 317 FLEKNDICTIVQACDAGKKXVLGS 246 ++ + +C+ + C + K +LG+ Sbjct: 499 VMDPSFVCSKIGVCPSAYKLLLGT 522 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = -3 Query: 494 CVFCHHLMDEVLSKLKDPDAEFEIIQILLKECXKIEGH--EQQCKRLVLQYIPLIL--VN 327 C C ++ E + LKD E EI+ L K C I CK +V Y+P+IL + Sbjct: 63 CDICKTVVTEAGNLLKDNATEEEILHYLEKTCAWIHDSSLSASCKEVVDSYLPVILDMIK 122 Query: 326 GXKFLEKNDICTIVQACDA 270 G + ++C+ + C + Sbjct: 123 G-EMSNPGEVCSALNLCQS 140
>OXAA_DEIRA (Q9RSH5) Membrane protein oxaA| Length = 428 Score = 33.5 bits (75), Expect = 0.54 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +3 Query: 120 ASRILDTYVQQEELVHYVSSGFTRLGVVFLPSFIXQQTLL 239 A+ L+ Y + EL+H SG+T L +F P+F Q +LL Sbjct: 159 ATSSLEVYGGKNELIHLYQSGYTELPGLFQPNFFGQISLL 198
>ATG11_CANAL (Q5AMN3) Autophagy-related protein 11| Length = 1165 Score = 32.7 bits (73), Expect = 0.93 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = -3 Query: 632 KCVELVDSYATLLFAKIAEIXPEEFCKRNGLCRXNALLSGVRSESTCVFCHHLMDEVLSK 453 K +EL D++ L AKI E + K + N +S +RSE H+ +++LS Sbjct: 750 KKLELSDNHNKELEAKITEYTQKATSKTKEIADLNKTVSNLRSELGDAM--HMKNDLLSN 807 Query: 452 LKDPDAEF 429 L +AEF Sbjct: 808 LSSKEAEF 815
>NF1_HUMAN (P21359) Neurofibromin (Neurofibromatosis-related protein NF-1)| [Contains: Neurofibromin truncated] Length = 2839 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = -3 Query: 479 HLMDEVLSKLKDPDAEFEII-----QILLKECXKIEGHEQQCKRLVLQYIPLILVNGXKF 315 H +D + L +PDA E Q+L C K+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 314 LEKN 303 L KN Sbjct: 611 LLKN 614
>PHLC1_CLOPE (P15310) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Alpha-toxin) (Hemolysin) (Lecithinase) Length = 398 Score = 29.6 bits (65), Expect = 7.9 Identities = 15/62 (24%), Positives = 28/62 (45%) Frame = +2 Query: 398 CTP*EEFELSQTQHQDLSVWTKLHP*GGGKTRMCSHFSHQTEEHCXCRGHFVCRTLLAXS 577 C E+F +++D + W+K + G KT ++SH + H + + LA S Sbjct: 197 CKTNEDFYADILKNKDFNAWSKEYARGFAKTGKSIYYSHASMSHSWDDWDYAAKVTLANS 256 Query: 578 PR 583 + Sbjct: 257 QK 258
>GLRX1_YEAST (P25373) Glutaredoxin-1 (Glutathione-dependent oxidoreductase 1)| Length = 110 Score = 29.6 bits (65), Expect = 7.9 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = -3 Query: 512 VRSESTCVFCHHLMDEVLSKLKDPDAEFEIIQIL-LKECXKIEG--HEQQCKRLVLQYIP 342 V S++ C +CH ++ + KLK P ++ ++Q+ +KE I+ +E +R V P Sbjct: 21 VASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTV----P 76 Query: 341 LILVNGXKFLEKND 300 I +NG K + ND Sbjct: 77 NIYING-KHIGGND 89
>NF1_MOUSE (Q04690) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2841 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = -3 Query: 479 HLMDEVLSKLKDPDAEFEII-----QILLKECXKIEGHEQQCKRLVLQYIPLILVNGXKF 315 H +D + L +PDA E Q+L C K+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 314 LEKN 303 L KN Sbjct: 611 LLKN 614
>DSG3_MOUSE (O35902) Desmoglein-3 precursor (130 kDa pemphigus vulgaris antigen| homolog) Length = 993 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -3 Query: 392 IEGHEQQCKRLVLQYIPLILVNGXKFLEKNDICT 291 IEG + + K + +P + NG F+E +++CT Sbjct: 671 IEGAQPEDKEITNICVPPVTTNGADFMESSEVCT 704
>NF1_RAT (P97526) Neurofibromin (Neurofibromatosis-related protein NF-1)| Length = 2820 Score = 29.6 bits (65), Expect = 7.9 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = -3 Query: 479 HLMDEVLSKLKDPDAEFEII-----QILLKECXKIEGHEQQCKRLVLQYIPLILVNGXKF 315 H +D + L +PDA E Q+L C K+ H+ +L+++ IL+ KF Sbjct: 553 HQLDSI--DLWNPDAPVETFWEISSQMLFYICKKLTSHQMLSSTEILKWLREILICRNKF 610 Query: 314 LEKN 303 L KN Sbjct: 611 LLKN 614 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,463,934 Number of Sequences: 219361 Number of extensions: 1609151 Number of successful extensions: 4134 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4131 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
