ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14l08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-ga... 49 1e-05
2GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-ga... 49 1e-05
3GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-ga... 47 4e-05
4GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-ga... 45 2e-04
5GLR27_ARATH (Q8LGN0) Glutamate receptor 2.7 precursor (Ligand-ga... 40 0.007
6GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-ga... 39 0.011
7GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-ga... 39 0.015
8GLR28_ARATH (Q9C5V5) Glutamate receptor 2.8 precursor (Ligand-ga... 38 0.025
9GLR29_ARATH (O81078) Glutamate receptor 2.9 precursor (Ligand-ga... 38 0.025
10GLR21_ARATH (O04660) Glutamate receptor 2.1 precursor (Ligand-ga... 33 0.82
11GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-ga... 32 1.4
12COX3_LUMTE (Q34943) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) ... 31 3.1
13SQD1_SPIOL (Q84KI6) UDP-sulfoquinovose synthase, chloroplast pre... 30 6.9

>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel|
            3.6)
          Length = 903

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 13/66 (19%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKY-------------LRHEPRRSLRRFIS 546
            +L L+SF+GLF++CGVACVLAL +Y  +M+ ++              R  P   +  F+S
Sbjct: 813  RLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLS 872

Query: 545  FVHNKD 528
            FV  K+
Sbjct: 873  FVKEKE 878



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>GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-gated ion channel|
            3.2) (AtGluR2)
          Length = 912

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRH--------------EPRRSLRRFI 549
            QL+L SF+GLFL+CG++C +AL IYF  ++  + RH                 +SL+ F+
Sbjct: 823  QLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFL 882

Query: 548  SFVHNK-DPPKNMERRSMSLLESSTPTTPM 462
            ++   K D  K   +R  +   S  P+ P+
Sbjct: 883  AYFDEKEDESKRRMKRKRNDDLSLKPSRPI 912



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>GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-gated ion channel|
            3.3)
          Length = 933

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP-------------------RRS 564
            +L L+SF+GLFLICGVAC+LAL +YF + + + L  +P                      
Sbjct: 823  RLHLKSFWGLFLICGVACLLALFLYF-VQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTR 881

Query: 563  LRRFISFVHNKDPPKNMERRSMSLLESSTPTTPMSSLAALDIER 432
            L+RF+S +  K+  K+ E +   +  S   T+  +     D ER
Sbjct: 882  LQRFLSLMDEKEESKH-ESKKRKIDGSMNDTSGSTRSRGFDRER 924



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>GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-gated ion channel|
           3.4) (AtGLR4)
          Length = 959

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 19/38 (50%), Positives = 28/38 (73%)
 Frame = -1

Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP 573
           QL L+SF+GLFLICG+ C +AL ++F  + ++Y R  P
Sbjct: 852 QLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLP 889



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>GLR27_ARATH (Q8LGN0) Glutamate receptor 2.7 precursor (Ligand-gated ion channel|
            2.7)
          Length = 949

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
 Frame = -1

Query: 683  LRLESFFGLFLICGVACVLALLIYFGIMLYKY---LRHEPRRSLRRFISFVHNKDPPKNM 513
            L L SF+GLFLI G+A  LALLI+    LY++   L  +   S R  + F+      K++
Sbjct: 814  LSLSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENSFRGKLKFLVRNFDEKDI 873

Query: 512  ER---RSMSLLESSTPTTPMSSLAALDIERP 429
            +    +  ++   S+P T  SS    D   P
Sbjct: 874  KSHMFKENAVHNVSSPITQGSSSPLTDQSTP 904



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>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel|
            3.1) (AtGLR2)
          Length = 921

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEPR---------------RSLRRF 552
            QL + SF+G+FL+ G+AC++AL I+F  ++  + +  P                  L+ F
Sbjct: 822  QLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCKDTPEVVVEEAIPSPKSSRLTKLQTF 881

Query: 551  ISFVHNKD 528
            ++FV  K+
Sbjct: 882  LAFVDEKE 889



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>GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-gated ion channel|
           3.5) (Ionotropic glutamate receptor GLR6)
          Length = 953

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -1

Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEPRRS 564
           Q+ ++SF+GLFLICGV   +AL ++   + ++Y R  P  S
Sbjct: 845 QISVQSFWGLFLICGVVWFIALTLFCWKVFWQYQRLRPEES 885



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>GLR28_ARATH (Q9C5V5) Glutamate receptor 2.8 precursor (Ligand-gated ion channel|
           2.8)
          Length = 947

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = -1

Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYK 591
           +L L SF+GLFLI G+A  LALLI+  + LY+
Sbjct: 811 RLSLRSFWGLFLIAGIASFLALLIFVFLFLYE 842



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>GLR29_ARATH (O81078) Glutamate receptor 2.9 precursor (Ligand-gated ion channel|
            2.9)
          Length = 940

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKY---LRHEPRRSLRRFISFVHNKDPPKN 516
            +L L SF GLFLI G A   +LL++  + LY++   L  +   SL R + F+      K+
Sbjct: 803  RLNLSSFLGLFLIAGTAISFSLLVFVALFLYEHRHTLGDDSEDSLWRKLKFLFKIFDEKD 862

Query: 515  MERRSMSLLESSTPTTPMS 459
            M   +         ++PM+
Sbjct: 863  MNSHTFKNSAIHNISSPMT 881



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>GLR21_ARATH (O04660) Glutamate receptor 2.1 precursor (Ligand-gated ion channel|
           2.1) (AtGLR3)
          Length = 901

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
 Frame = -1

Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP-RRSLR 558
           QL  +SF+ LFL+  + C +ALL +    +Y++L+  P +R+LR
Sbjct: 818 QLGFDSFWVLFLVAAIVCTMALLKF----VYQFLKENPNQRNLR 857



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>GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-gated ion channel|
            3.7) (Ionotropic glutamate receptor GLR5)
          Length = 921

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 21/83 (25%)
 Frame = -1

Query: 686  QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHE--------PRRS--------LRR 555
            QL L+SF GL+L+C    V A L++   M+ +++R+         PR S        LR 
Sbjct: 817  QLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRE 876

Query: 554  ----FISFVHNKDPP-KNMERRS 501
                F+ FV  K+   K M RRS
Sbjct: 877  LVFDFVEFVDEKEEAIKRMFRRS 899



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>COX3_LUMTE (Q34943) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide III)
          Length = 259

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +2

Query: 488 QAGSWIASPCSLADPCYGRTR*IF*GSSSVHV------SGICIA*YQSR*AARGH 634
           QAG ++A+P S+AD  YG T  +  G   +HV        IC+A   S   + GH
Sbjct: 175 QAGEYMAAPFSIADSVYGTTFFVATGFHGLHVLIGSSFLAICLARTWSHHFSAGH 229



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>SQD1_SPIOL (Q84KI6) UDP-sulfoquinovose synthase, chloroplast precursor (EC|
           3.13.1.1) (Sulfite:UDP-glucose sulfotransferase)
           (Sulfolipid biosynthesis protein) (SoSQD1)
          Length = 482

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +3

Query: 69  TSCSLQIQPTE*Y*TEVPTQSYWLGITQYPPKYSHAKKKVILPSLIY 209
           TSCS+++ P+E    ++ ++ + +G T+YP  ++    K    SL++
Sbjct: 7   TSCSMKVSPSE----KLSSKCWNIGSTKYPMSFTQQTSKSAFKSLVH 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,365,594
Number of Sequences: 219361
Number of extensions: 2189666
Number of successful extensions: 5051
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5048
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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