Clone Name | rbasd14l08 |
---|---|
Clone Library Name | barley_pub |
>GLR36_ARATH (Q84W41) Glutamate receptor 3.6 precursor (Ligand-gated ion channel| 3.6) Length = 903 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 13/66 (19%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKY-------------LRHEPRRSLRRFIS 546 +L L+SF+GLF++CGVACVLAL +Y +M+ ++ R P + F+S Sbjct: 813 RLELKSFWGLFVVCGVACVLALAVYTVLMIRQFGQQCPEEAEGSIRRRSSPSARIHSFLS 872 Query: 545 FVHNKD 528 FV K+ Sbjct: 873 FVKEKE 878
>GLR32_ARATH (Q93YT1) Glutamate receptor 3.2 precursor (Ligand-gated ion channel| 3.2) (AtGluR2) Length = 912 Score = 48.9 bits (115), Expect = 1e-05 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 15/90 (16%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRH--------------EPRRSLRRFI 549 QL+L SF+GLFL+CG++C +AL IYF ++ + RH +SL+ F+ Sbjct: 823 QLKLRSFWGLFLVCGISCFIALFIYFFKIVRDFFRHGKYDEEATVPSPESSRSKSLQTFL 882 Query: 548 SFVHNK-DPPKNMERRSMSLLESSTPTTPM 462 ++ K D K +R + S P+ P+ Sbjct: 883 AYFDEKEDESKRRMKRKRNDDLSLKPSRPI 912
>GLR33_ARATH (Q9C8E7) Glutamate receptor 3.3 precursor (Ligand-gated ion channel| 3.3) Length = 933 Score = 47.4 bits (111), Expect = 4e-05 Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 19/104 (18%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP-------------------RRS 564 +L L+SF+GLFLICGVAC+LAL +YF + + + L +P Sbjct: 823 RLHLKSFWGLFLICGVACLLALFLYF-VQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTR 881 Query: 563 LRRFISFVHNKDPPKNMERRSMSLLESSTPTTPMSSLAALDIER 432 L+RF+S + K+ K+ E + + S T+ + D ER Sbjct: 882 LQRFLSLMDEKEESKH-ESKKRKIDGSMNDTSGSTRSRGFDRER 924
>GLR34_ARATH (Q8GXJ4) Glutamate receptor 3.4 precursor (Ligand-gated ion channel| 3.4) (AtGLR4) Length = 959 Score = 45.1 bits (105), Expect = 2e-04 Identities = 19/38 (50%), Positives = 28/38 (73%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP 573 QL L+SF+GLFLICG+ C +AL ++F + ++Y R P Sbjct: 852 QLSLKSFWGLFLICGITCFMALTVFFWRVFWQYQRLLP 889
>GLR27_ARATH (Q8LGN0) Glutamate receptor 2.7 precursor (Ligand-gated ion channel| 2.7) Length = 949 Score = 40.0 bits (92), Expect = 0.007 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 6/91 (6%) Frame = -1 Query: 683 LRLESFFGLFLICGVACVLALLIYFGIMLYKY---LRHEPRRSLRRFISFVHNKDPPKNM 513 L L SF+GLFLI G+A LALLI+ LY++ L + S R + F+ K++ Sbjct: 814 LSLSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENSFRGKLKFLVRNFDEKDI 873 Query: 512 ER---RSMSLLESSTPTTPMSSLAALDIERP 429 + + ++ S+P T SS D P Sbjct: 874 KSHMFKENAVHNVSSPITQGSSSPLTDQSTP 904
>GLR31_ARATH (Q7XJL2) Glutamate receptor 3.1 precursor (Ligand-gated ion channel| 3.1) (AtGLR2) Length = 921 Score = 39.3 bits (90), Expect = 0.011 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 15/68 (22%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEPR---------------RSLRRF 552 QL + SF+G+FL+ G+AC++AL I+F ++ + + P L+ F Sbjct: 822 QLNVHSFWGMFLVVGIACLVALFIHFFKIIRDFCKDTPEVVVEEAIPSPKSSRLTKLQTF 881 Query: 551 ISFVHNKD 528 ++FV K+ Sbjct: 882 LAFVDEKE 889
>GLR35_ARATH (Q9SW97) Glutamate receptor 3.5 precursor (Ligand-gated ion channel| 3.5) (Ionotropic glutamate receptor GLR6) Length = 953 Score = 38.9 bits (89), Expect = 0.015 Identities = 17/41 (41%), Positives = 27/41 (65%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEPRRS 564 Q+ ++SF+GLFLICGV +AL ++ + ++Y R P S Sbjct: 845 QISVQSFWGLFLICGVVWFIALTLFCWKVFWQYQRLRPEES 885
>GLR28_ARATH (Q9C5V5) Glutamate receptor 2.8 precursor (Ligand-gated ion channel| 2.8) Length = 947 Score = 38.1 bits (87), Expect = 0.025 Identities = 18/32 (56%), Positives = 24/32 (75%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYK 591 +L L SF+GLFLI G+A LALLI+ + LY+ Sbjct: 811 RLSLRSFWGLFLIAGIASFLALLIFVFLFLYE 842
>GLR29_ARATH (O81078) Glutamate receptor 2.9 precursor (Ligand-gated ion channel| 2.9) Length = 940 Score = 38.1 bits (87), Expect = 0.025 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKY---LRHEPRRSLRRFISFVHNKDPPKN 516 +L L SF GLFLI G A +LL++ + LY++ L + SL R + F+ K+ Sbjct: 803 RLNLSSFLGLFLIAGTAISFSLLVFVALFLYEHRHTLGDDSEDSLWRKLKFLFKIFDEKD 862 Query: 515 MERRSMSLLESSTPTTPMS 459 M + ++PM+ Sbjct: 863 MNSHTFKNSAIHNISSPMT 881
>GLR21_ARATH (O04660) Glutamate receptor 2.1 precursor (Ligand-gated ion channel| 2.1) (AtGLR3) Length = 901 Score = 33.1 bits (74), Expect = 0.82 Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHEP-RRSLR 558 QL +SF+ LFL+ + C +ALL + +Y++L+ P +R+LR Sbjct: 818 QLGFDSFWVLFLVAAIVCTMALLKF----VYQFLKENPNQRNLR 857
>GLR37_ARATH (Q9SDQ4) Glutamate receptor 3.7 precursor (Ligand-gated ion channel| 3.7) (Ionotropic glutamate receptor GLR5) Length = 921 Score = 32.3 bits (72), Expect = 1.4 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 21/83 (25%) Frame = -1 Query: 686 QLRLESFFGLFLICGVACVLALLIYFGIMLYKYLRHE--------PRRS--------LRR 555 QL L+SF GL+L+C V A L++ M+ +++R+ PR S LR Sbjct: 817 QLHLKSFKGLYLVCIAITVSAFLVFVLRMIRQFVRYRRMERTSSMPRASWSASPTLRLRE 876 Query: 554 ----FISFVHNKDPP-KNMERRS 501 F+ FV K+ K M RRS Sbjct: 877 LVFDFVEFVDEKEEAIKRMFRRS 899
>COX3_LUMTE (Q34943) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 259 Score = 31.2 bits (69), Expect = 3.1 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = +2 Query: 488 QAGSWIASPCSLADPCYGRTR*IF*GSSSVHV------SGICIA*YQSR*AARGH 634 QAG ++A+P S+AD YG T + G +HV IC+A S + GH Sbjct: 175 QAGEYMAAPFSIADSVYGTTFFVATGFHGLHVLIGSSFLAICLARTWSHHFSAGH 229
>SQD1_SPIOL (Q84KI6) UDP-sulfoquinovose synthase, chloroplast precursor (EC| 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SoSQD1) Length = 482 Score = 30.0 bits (66), Expect = 6.9 Identities = 13/47 (27%), Positives = 28/47 (59%) Frame = +3 Query: 69 TSCSLQIQPTE*Y*TEVPTQSYWLGITQYPPKYSHAKKKVILPSLIY 209 TSCS+++ P+E ++ ++ + +G T+YP ++ K SL++ Sbjct: 7 TSCSMKVSPSE----KLSSKCWNIGSTKYPMSFTQQTSKSAFKSLVH 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,365,594 Number of Sequences: 219361 Number of extensions: 2189666 Number of successful extensions: 5051 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5048 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)