ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd15a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-as... 32 0.29
2MT3_BOVIN (P37359) Metallothionein-3 (MT-3) (Metallothionein-III... 29 3.2
3GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (... 28 5.4
4MT2_COLLI (P15787) Metallothionein-2 (MT-2) (Metallothionein-II)... 28 7.1
5MYOD_DICDI (P34109) Myosin ID heavy chain 27 9.3

>KR151_CAPHI (Q6R645) Keratin-associated protein 15-1 (Keratin-associated|
           protein 15.1)
          Length = 136

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 PCQSHYTSALKSGNIGQTKGKYIYMSTSVQVTDASKYCHHRQNRCSPTMTSS 265
           PCQ+ YT +L SGNIG   G +   ST  Q            N CSPT  SS
Sbjct: 85  PCQTIYTGSLGSGNIG--LGSFGCGSTGFQSLGCG------SNFCSPTYVSS 128



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>MT3_BOVIN (P37359) Metallothionein-3 (MT-3) (Metallothionein-III) (MT-III)|
           (Growth inhibitory factor) (GIF)
          Length = 68

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 45  SDPVRCSCKRAATFRRTCFCCCPA 116
           SDP +C     A+ +++C  CCPA
Sbjct: 17  SDPCKCEGCTCASCKKSCCSCCPA 40



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>GTA_NPVAC (P41447) Probable global transactivator (EC 3.6.1.-) (ATP-dependent|
           helicase GTA)
          Length = 506

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 152 IGQTKGKYIYMSTSVQVTDASKYCHHRQNR 241
           +GQTK  Y+Y   +V+     KY   RQ++
Sbjct: 452 MGQTKNTYVYKMLNVEDNSIEKYIKQRQDK 481



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>MT2_COLLI (P15787) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
          Length = 63

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 60  CSCK--RAATFRRTCFCCCPAS 119
           C CK  R  + R++C  CCPAS
Sbjct: 20  CKCKNCRCQSCRKSCCSCCPAS 41



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>MYOD_DICDI (P34109) Myosin ID heavy chain|
          Length = 1109

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 127 VMGLAGQQQKQVLRNVAALLQLQRTG 50
           V+GL   +QK+V R VAA+L L   G
Sbjct: 253 VIGLTDSEQKEVFRLVAAILYLGNVG 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,857,546
Number of Sequences: 219361
Number of extensions: 1075673
Number of successful extensions: 2944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2943
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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