ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clon... 309 7e-81
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 210 5e-51
3dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 210 5e-51
4ref|NM_111588.2| Arabidopsis thaliana unknown protein AT3G07080 ... 72 3e-09
5gb|BT015790.1| Arabidopsis thaliana At3g07080 mRNA, complete cds 72 3e-09
6gb|BT008641.1| Arabidopsis thaliana clone RAFL17-26-M03 (R50543)... 72 3e-09
7emb|BX822554.1|CNS0A5Y6 Arabidopsis thaliana Full-length cDNA Co... 72 3e-09
8emb|BX822100.1|CNS0A5UE Arabidopsis thaliana Full-length cDNA Co... 64 7e-07
9gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC... 60 1e-05
10gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC... 60 1e-05
11emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on ch... 46 0.15
12emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on ch... 44 0.61
13gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cl... 42 2.4
14gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome... 42 2.4
15emb|Y10196.1|HSPEX Homo sapiens PHEX gene 42 2.4
16gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of... 42 2.4
17emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella ty... 42 2.4
18gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Canc... 42 2.4
19gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, comp... 42 2.4
20gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, comple... 42 2.4
21gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 42 2.4
22gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 42 2.4
23gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-... 42 2.4
24gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 2.4
25gb|M68936.1|STYPARCF Salmonella typhimurium parC and parF genes,... 42 2.4
26gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21... 40 9.5
27gb|M88292.1|BOVRIB205 Bos taurus (clone 1) ADP-ribosylation fact... 40 9.5
28gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, comple... 40 9.5
29gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, comple... 40 9.5
30gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complet... 40 9.5
31gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, compl... 40 9.5
32emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chro... 40 9.5
33emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chr... 40 9.5
34emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on ch... 40 9.5
35emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chr... 40 9.5
36emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chro... 40 9.5
37gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, co... 40 9.5
38emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686... 40 9.5
39emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chr... 40 9.5
40emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on ch... 40 9.5
41gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Can... 40 9.5
42ref|NM_174689.1| Bos taurus ADP-ribosylation factor 2 (ARF2), mRNA 40 9.5
43gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, co... 40 9.5
44gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q2... 40 9.5
45emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in... 40 9.5
46gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome... 40 9.5
47gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, comple... 40 9.5
48emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 ... 40 9.5
49gb|M88287.1|BOVRIB2A Bos taurus ADP-ribosylation factor 2 mRNA, ... 40 9.5

>dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full
            insert sequence
          Length = 1973

 Score =  309 bits (156), Expect = 7e-81
 Identities = 270/308 (87%)
 Strand = Plus / Minus

                                                                        
Query: 383  atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442
            ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 1520 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 1461

                                                                        
Query: 443  ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502
            ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| 
Sbjct: 1460 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 1401

                                                                        
Query: 503  gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
            || || || || || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1400 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 1341

                                                                        
Query: 563  acattatctaacaaacctttcccaacaatcagaccaacttgctcccatgtcagcgtgtgg 622
            |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct: 1340 acattatctaacaaaccttttccaacaataagaccaacttgctcccatgtcagcctgtgg 1281

                                                                        
Query: 623  aatggctccagcttggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattg 682
            ||||||||||||||||  ||||| |  | ||| |||| ||||| |||||| ||||| || 
Sbjct: 1280 aatggctccagcttggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgtta 1221

                    
Query: 683  aacagtcc 690
            ||||||||
Sbjct: 1220 aacagtcc 1213



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  210 bits (106), Expect = 5e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                            
Query: 383      atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442
                ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 28046135 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 28046076

                                                                            
Query: 443      ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502
                ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| 
Sbjct: 28046075 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 28046016

                                                                            
Query: 503      gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
                || || || || || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 28046015 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 28045956

                                  
Query: 563      acattatctaacaaacct 580
                ||||||||||||||||||
Sbjct: 28045955 acattatctaacaaacct 28045938



 Score =  107 bits (54), Expect = 5e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                            
Query: 577      acctttcccaacaatcagaccaacttgctcccatgtcagcgtgtggaatggctccagctt 636
                |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 28045752 accttttccaacaataagaccaacttgctcccatgtcagcctgtggaatggctccagctt 28045693

                                                                      
Query: 637      ggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattgaacagtcc 690
                ||  ||||| |  | ||| |||| ||||| |||||| ||||| || ||||||||
Sbjct: 28045692 ggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgttaaacagtcc 28045639



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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0547F09
          Length = 140615

 Score =  210 bits (106), Expect = 5e-51
 Identities = 175/198 (88%)
 Strand = Plus / Minus

                                                                         
Query: 383   atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442
             ||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||   
Sbjct: 90954 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 90895

                                                                         
Query: 443   ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502
             ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| 
Sbjct: 90894 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 90835

                                                                         
Query: 503   gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
             || || || || || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 90834 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 90775

                               
Query: 563   acattatctaacaaacct 580
             ||||||||||||||||||
Sbjct: 90774 acattatctaacaaacct 90757



 Score =  107 bits (54), Expect = 5e-20
 Identities = 99/114 (86%)
 Strand = Plus / Minus

                                                                         
Query: 577   acctttcccaacaatcagaccaacttgctcccatgtcagcgtgtggaatggctccagctt 636
             |||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 90571 accttttccaacaataagaccaacttgctcccatgtcagcctgtggaatggctccagctt 90512

                                                                   
Query: 637   ggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattgaacagtcc 690
             ||  ||||| |  | ||| |||| ||||| |||||| ||||| || ||||||||
Sbjct: 90511 ggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgttaaacagtcc 90458



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>ref|NM_111588.2| Arabidopsis thaliana unknown protein AT3G07080 mRNA, complete cds
          Length = 1748

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 503  gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
            |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 1394 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1335

                                        
Query: 563  acattatctaacaaacctttcccaacaa 590
            |||||||||||||||||||| |||||||
Sbjct: 1334 acattatctaacaaacctttgccaacaa 1307



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>gb|BT015790.1| Arabidopsis thaliana At3g07080 mRNA, complete cds
          Length = 1317

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 503  gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
            |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 1070 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1011

                                        
Query: 563  acattatctaacaaacctttcccaacaa 590
            |||||||||||||||||||| |||||||
Sbjct: 1010 acattatctaacaaacctttgccaacaa 983



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>gb|BT008641.1| Arabidopsis thaliana clone RAFL17-26-M03 (R50543) putative integral
            membrane protein (At3g07080) mRNA, complete cds
          Length = 1768

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 503  gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
            |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 1394 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1335

                                        
Query: 563  acattatctaacaaacctttcccaacaa 590
            |||||||||||||||||||| |||||||
Sbjct: 1334 acattatctaacaaacctttgccaacaa 1307



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>emb|BX822554.1|CNS0A5Y6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB48ZD12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1738

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 503  gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
            |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 1376 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1317

                                        
Query: 563  acattatctaacaaacctttcccaacaa 590
            |||||||||||||||||||| |||||||
Sbjct: 1316 acattatctaacaaacctttgccaacaa 1289



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>emb|BX822100.1|CNS0A5UE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB12ZB07 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1666

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 539  tttgcccacaagtagtcactcagaacattatctaacaaacctttcccaacaa 590
            ||||||||||  |||||||| || |||||||||||||||||||| |||||||
Sbjct: 1274 tttgcccacagatagtcactaagcacattatctaacaaacctttgccaacaa 1223



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>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
             sequence
          Length = 99128

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                         
Query: 503   gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
             |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 92096 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 92155

                               
Query: 563   acattatctaacaaacct 580
             ||||||||||||||||||
Sbjct: 92156 acattatctaacaaacct 92173



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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 503   gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562
             |||||||| || ||||||||||| |  || | ||| ||||||||||  |||||||| || 
Sbjct: 81780 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 81721

                               
Query: 563   acattatctaacaaacct 580
             ||||||||||||||||||
Sbjct: 81720 acattatctaacaaacct 81703



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>emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on chromosome 13, complete
             sequence
          Length = 61510

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 328   ggtaacaatgggtgcttcctgct 350
             |||||||||||||||||||||||
Sbjct: 49840 ggtaacaatgggtgcttcctgct 49862



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>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part
              of a novel gene and the 5' end of a novel gene, complete
              sequence
          Length = 170326

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 77     agaaattatacaaatgattttc 98
              ||||||||||||||||||||||
Sbjct: 149349 agaaattatacaaatgattttc 149370



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>gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cluster, complete
             sequence
          Length = 45000

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   aatatccatcccttccattgc 161
             |||||||||||||||||||||
Sbjct: 18385 aatatccatcccttccattgc 18405



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>gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome 6, complete sequence
          Length = 190224

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    aaaatttagctacacaacaca 71
             |||||||||||||||||||||
Sbjct: 53376 aaaatttagctacacaacaca 53396



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>emb|Y10196.1|HSPEX Homo sapiens PHEX gene
          Length = 242825

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 77    agaaattatacaaatgattttcccttccc 105
             |||||||||| |||| |||||||||||||
Sbjct: 27053 agaaattataaaaatcattttcccttccc 27081



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>gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of the complete genome
          Length = 23018

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 11    cagtacagttgcccaaaaaac 31
             |||||||||||||||||||||
Sbjct: 22531 cagtacagttgcccaaaaaac 22551



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>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 13/20
          Length = 230050

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 11     cagtacagttgcccaaaaaac 31
              |||||||||||||||||||||
Sbjct: 217868 cagtacagttgcccaaaaaac 217888



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>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70009

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 379   tgggatgttgatgccagcaaa 399
             |||||||||||||||||||||
Sbjct: 39340 tgggatgttgatgccagcaaa 39360



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>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence
          Length = 142712

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 664    aaggaaaaacaacatattgaa 684
              |||||||||||||||||||||
Sbjct: 117896 aaggaaaaacaacatattgaa 117916



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>gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, complete sequence
          Length = 134778

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 664    aaggaaaaacaacatattgaa 684
              |||||||||||||||||||||
Sbjct: 104286 aaggaaaaacaacatattgaa 104266



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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 11      cagtacagttgcccaaaaaac 31
               |||||||||||||||||||||
Sbjct: 3146945 cagtacagttgcccaaaaaac 3146965



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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 11      cagtacagttgcccaaaaaac 31
               |||||||||||||||||||||
Sbjct: 3179363 cagtacagttgcccaaaaaac 3179383



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>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence
          Length = 38476

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 77    agaaattatacaaatgattttcccttccc 105
             |||||||||| |||| |||||||||||||
Sbjct: 36694 agaaattataaaaatcattttcccttccc 36722



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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 11      cagtacagttgcccaaaaaac 31
               |||||||||||||||||||||
Sbjct: 3297127 cagtacagttgcccaaaaaac 3297147



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>gb|M68936.1|STYPARCF Salmonella typhimurium parC and parF genes, complete cds
          Length = 3527

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 11   cagtacagttgcccaaaaaac 31
            |||||||||||||||||||||
Sbjct: 2854 cagtacagttgcccaaaaaac 2834



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>gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21.3, complete sequence
          Length = 73259

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 649   caccaacgcaacaggaaggaaaaacaac 676
             |||||||  |||||||||||||||||||
Sbjct: 59268 caccaactgaacaggaaggaaaaacaac 59241



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>gb|M88292.1|BOVRIB205 Bos taurus (clone 1) ADP-ribosylation factor 141895, exon 5 and
            complete cds
          Length = 1906

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 636  tggcaaaatttagcaccaac 655
            ||||||||||||||||||||
Sbjct: 1188 tggcaaaatttagcaccaac 1169



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>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence
          Length = 200136

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  caagggcagcgataggaact 487
            ||||||||||||||||||||
Sbjct: 1106 caagggcagcgataggaact 1125



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>gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, complete sequence
          Length = 203519

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaattatacaaatgattttc 98
              ||||||||||||||||||||
Sbjct: 123572 aaattatacaaatgattttc 123591



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>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence
          Length = 164511

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   agaaggattgcttttgccca 546
             ||||||||||||||||||||
Sbjct: 83993 agaaggattgcttttgccca 84012



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>gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, complete sequence
          Length = 181179

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 663    gaaggaaaaacaacatattg 682
              ||||||||||||||||||||
Sbjct: 103053 gaaggaaaaacaacatattg 103034



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>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the
             5' end of the GPR64 gene for G protein-coupled receptor 64
             and a CpG island, complete sequence
          Length = 191318

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    aattatacaaatgattttcc 99
             ||||||||||||||||||||
Sbjct: 54687 aattatacaaatgattttcc 54706



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>emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chromosome 1 Contains an H+
              transporting ATPase lysosomal accessory protein 2 (ATP6AP2)
              pseudogene, the 5' end o the CRB1 gene for crumbs homolog 1
              (Drosophila) and a mitochondrial ribosomal protein S21
              (MRPS21) pseudogene, complete sequence
          Length = 212888

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     aaaatttagctacacaacac 70
              ||||||||||||||||||||
Sbjct: 115903 aaaatttagctacacaacac 115884



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>emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on chromosome 10, complete
             sequence
          Length = 170365

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 656   gcaacaggaaggaaaaacaa 675
             ||||||||||||||||||||
Sbjct: 74124 gcaacaggaaggaaaaacaa 74105



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>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1
             Contains 2 novel genes, complete sequence
          Length = 118873

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   aaaaccgactaatacagcag 416
             ||||||||||||||||||||
Sbjct: 49203 aaaaccgactaatacagcag 49184



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>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part
             of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), a 40S ribosomal protein S12 (RPS12)
             pseudogene and a 60S ribosomal protein L37 (RPL37)
             pseudogene, complete sequence
          Length = 176405

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   gatgttgatgccagcaaaac 401
             ||||||||||||||||||||
Sbjct: 69935 gatgttgatgccagcaaaac 69916



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>gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, complete sequence
          Length = 179812

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   aagggcagcgataggaactt 488
             ||||||||||||||||||||
Sbjct: 35651 aagggcagcgataggaactt 35632



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>emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686C0388 (from clone
            DKFZp686C0388)
          Length = 6578

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 80   aattatacaaatgattttcc 99
            ||||||||||||||||||||
Sbjct: 1757 aattatacaaatgattttcc 1776



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>emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chromosome 4 Contains a
              ribosomal protein S2 (Rps2) pseudogene, complete sequence
          Length = 198964

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    atggtaacaatgggtgcttc 345
              ||||||||||||||||||||
Sbjct: 183012 atggtaacaatgggtgcttc 183031



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>emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on chromosome X, complete
              sequence
          Length = 215381

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    aatggtaacaatgggtgctt 344
              ||||||||||||||||||||
Sbjct: 204901 aatggtaacaatgggtgctt 204920



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>gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 105375

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    attatacaaatgattttccc 100
             ||||||||||||||||||||
Sbjct: 24371 attatacaaatgattttccc 24390



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>ref|NM_174689.1| Bos taurus ADP-ribosylation factor 2 (ARF2), mRNA
          Length = 2269

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 636  tggcaaaatttagcaccaac 655
            ||||||||||||||||||||
Sbjct: 1619 tggcaaaatttagcaccaac 1600



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>gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, complete sequence
          Length = 169865

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 649   caccaacgcaacaggaaggaaaaacaac 676
             |||||||  |||||||||||||||||||
Sbjct: 83440 caccaactgaacaggaaggaaaaacaac 83413



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>gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q21, complete sequence
          Length = 177726

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 649    caccaacgcaacaggaaggaaaaacaac 676
              |||||||  |||||||||||||||||||
Sbjct: 159198 caccaactgaacaggaaggaaaaacaac 159171



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>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20,
              complete sequence
          Length = 166824

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    ccgggagcatgaccagtgag 459
              ||||||||||||||||||||
Sbjct: 115610 ccgggagcatgaccagtgag 115629



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>gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome 8, complete sequence
          Length = 228121

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaattatacaaatgattttc 98
              ||||||||||||||||||||
Sbjct: 203375 aaattatacaaatgattttc 203394



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>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence
          Length = 182904

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 468    caagggcagcgataggaact 487
              ||||||||||||||||||||
Sbjct: 137340 caagggcagcgataggaact 137359



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>emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 on chromosome 11, complete
            sequence
          Length = 37136

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 469  aagggcagcgataggaactt 488
            ||||||||||||||||||||
Sbjct: 2063 aagggcagcgataggaactt 2044



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>gb|M88287.1|BOVRIB2A Bos taurus ADP-ribosylation factor 2 mRNA, complete cds
          Length = 2268

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 636  tggcaaaatttagcaccaac 655
            ||||||||||||||||||||
Sbjct: 1618 tggcaaaatttagcaccaac 1599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,745,483
Number of Sequences: 3902068
Number of extensions: 5745483
Number of successful extensions: 104354
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104179
Number of HSP's gapped (non-prelim): 175
length of query: 694
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 671
effective length of database: 17,143,297,704
effective search space: 11503152759384
effective search space used: 11503152759384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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