Clone Name | rbasd14k23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full insert sequence Length = 1973 Score = 309 bits (156), Expect = 7e-81 Identities = 270/308 (87%) Strand = Plus / Minus Query: 383 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 1520 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 1461 Query: 443 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 1460 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 1401 Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 || || || || || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1400 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 1341 Query: 563 acattatctaacaaacctttcccaacaatcagaccaacttgctcccatgtcagcgtgtgg 622 |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| Sbjct: 1340 acattatctaacaaaccttttccaacaataagaccaacttgctcccatgtcagcctgtgg 1281 Query: 623 aatggctccagcttggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattg 682 |||||||||||||||| ||||| | | ||| |||| ||||| |||||| ||||| || Sbjct: 1280 aatggctccagcttggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgtta 1221 Query: 683 aacagtcc 690 |||||||| Sbjct: 1220 aacagtcc 1213
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 210 bits (106), Expect = 5e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 383 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 28046135 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 28046076 Query: 443 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 28046075 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 28046016 Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 || || || || || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 28046015 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 28045956 Query: 563 acattatctaacaaacct 580 |||||||||||||||||| Sbjct: 28045955 acattatctaacaaacct 28045938 Score = 107 bits (54), Expect = 5e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 577 acctttcccaacaatcagaccaacttgctcccatgtcagcgtgtggaatggctccagctt 636 |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 28045752 accttttccaacaataagaccaacttgctcccatgtcagcctgtggaatggctccagctt 28045693 Query: 637 ggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattgaacagtcc 690 || ||||| | | ||| |||| ||||| |||||| ||||| || |||||||| Sbjct: 28045692 ggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgttaaacagtcc 28045639
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 210 bits (106), Expect = 5e-51 Identities = 175/198 (88%) Strand = Plus / Minus Query: 383 atgttgatgccagcaaaaccgactaatacagcagcagctccgatgtagttcaacagaccg 442 ||||||||||||||||||||||| || |||||||||||||||||||||| ||| ||| Sbjct: 90954 atgttgatgccagcaaaaccgaccaacacagcagcagctccgatgtagtccaatagatga 90895 Query: 443 ggagcatgaccagtgagcgtgtccacaagggcagcgataggaacttggattgtaagaccg 502 ||||||||||| || || || ||||||| |||||| || ||||||||||| || ||||| Sbjct: 90894 ggagcatgacctgttagtgtatccacaatggcagcaattggaacttggatcgtgagacca 90835 Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 || || || || || ||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 90834 gccgtggctactgttgttgttgtgagaaggattgcttttgcccacaagtagtcactcaaa 90775 Query: 563 acattatctaacaaacct 580 |||||||||||||||||| Sbjct: 90774 acattatctaacaaacct 90757 Score = 107 bits (54), Expect = 5e-20 Identities = 99/114 (86%) Strand = Plus / Minus Query: 577 acctttcccaacaatcagaccaacttgctcccatgtcagcgtgtggaatggctccagctt 636 |||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 90571 accttttccaacaataagaccaacttgctcccatgtcagcctgtggaatggctccagctt 90512 Query: 637 ggcaaaatttagcaccaacgcaacaggaaggaaaaacaacatattgaacagtcc 690 || ||||| | | ||| |||| ||||| |||||| ||||| || |||||||| Sbjct: 90511 ggtgaaattcaagaacaatgcaaaaggaaagaaaaataacatgttaaacagtcc 90458
>ref|NM_111588.2| Arabidopsis thaliana unknown protein AT3G07080 mRNA, complete cds Length = 1748 Score = 71.9 bits (36), Expect = 3e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 1394 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1335 Query: 563 acattatctaacaaacctttcccaacaa 590 |||||||||||||||||||| ||||||| Sbjct: 1334 acattatctaacaaacctttgccaacaa 1307
>gb|BT015790.1| Arabidopsis thaliana At3g07080 mRNA, complete cds Length = 1317 Score = 71.9 bits (36), Expect = 3e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 1070 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1011 Query: 563 acattatctaacaaacctttcccaacaa 590 |||||||||||||||||||| ||||||| Sbjct: 1010 acattatctaacaaacctttgccaacaa 983
>gb|BT008641.1| Arabidopsis thaliana clone RAFL17-26-M03 (R50543) putative integral membrane protein (At3g07080) mRNA, complete cds Length = 1768 Score = 71.9 bits (36), Expect = 3e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 1394 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1335 Query: 563 acattatctaacaaacctttcccaacaa 590 |||||||||||||||||||| ||||||| Sbjct: 1334 acattatctaacaaacctttgccaacaa 1307
>emb|BX822554.1|CNS0A5Y6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB48ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1738 Score = 71.9 bits (36), Expect = 3e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 1376 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 1317 Query: 563 acattatctaacaaacctttcccaacaa 590 |||||||||||||||||||| ||||||| Sbjct: 1316 acattatctaacaaacctttgccaacaa 1289
>emb|BX822100.1|CNS0A5UE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1666 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 539 tttgcccacaagtagtcactcagaacattatctaacaaacctttcccaacaa 590 |||||||||| |||||||| || |||||||||||||||||||| ||||||| Sbjct: 1274 tttgcccacagatagtcactaagcacattatctaacaaacctttgccaacaa 1223
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete sequence Length = 99128 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Plus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 92096 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 92155 Query: 563 acattatctaacaaacct 580 |||||||||||||||||| Sbjct: 92156 acattatctaacaaacct 92173
>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence, complete sequence Length = 90142 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 503 gctgtagcaacggtggttgttgtgagaaggattgcttttgcccacaagtagtcactcaga 562 |||||||| || ||||||||||| | || | ||| |||||||||| |||||||| || Sbjct: 81780 gctgtagctacagtggttgttgtcaatagtactgcctttgcccacagatagtcactaagc 81721 Query: 563 acattatctaacaaacct 580 |||||||||||||||||| Sbjct: 81720 acattatctaacaaacct 81703
>emb|AL359436.14| Human DNA sequence from clone RP11-513N16 on chromosome 13, complete sequence Length = 61510 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 328 ggtaacaatgggtgcttcctgct 350 ||||||||||||||||||||||| Sbjct: 49840 ggtaacaatgggtgcttcctgct 49862
>emb|AL158838.12| Human DNA sequence from clone RP11-161I10 on chromosome 1 Contains part of a novel gene and the 5' end of a novel gene, complete sequence Length = 170326 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 77 agaaattatacaaatgattttc 98 |||||||||||||||||||||| Sbjct: 149349 agaaattatacaaatgattttc 149370
>gb|DQ176595.1| Monascus pilosus monacolin K biosynthetic gene cluster, complete sequence Length = 45000 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 aatatccatcccttccattgc 161 ||||||||||||||||||||| Sbjct: 18385 aatatccatcccttccattgc 18405
>gb|AC124500.5| Mus musculus BAC clone RP24-69C19 from chromosome 6, complete sequence Length = 190224 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 aaaatttagctacacaacaca 71 ||||||||||||||||||||| Sbjct: 53376 aaaatttagctacacaacaca 53396
>emb|Y10196.1|HSPEX Homo sapiens PHEX gene Length = 242825 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 77 agaaattatacaaatgattttcccttccc 105 |||||||||| |||| ||||||||||||| Sbjct: 27053 agaaattataaaaatcattttcccttccc 27081
>gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of the complete genome Length = 23018 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 22531 cagtacagttgcccaaaaaac 22551
>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 13/20 Length = 230050 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 217868 cagtacagttgcccaaaaaac 217888
>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 70009 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 379 tgggatgttgatgccagcaaa 399 ||||||||||||||||||||| Sbjct: 39340 tgggatgttgatgccagcaaa 39360
>gb|AC112175.2| Homo sapiens chromosome 5 clone CTD-2568P10, complete sequence Length = 142712 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 664 aaggaaaaacaacatattgaa 684 ||||||||||||||||||||| Sbjct: 117896 aaggaaaaacaacatattgaa 117916
>gb|AC026688.7| Homo sapiens chromosome 5 clone CTB-158E9, complete sequence Length = 134778 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 664 aaggaaaaacaacatattgaa 684 ||||||||||||||||||||| Sbjct: 104286 aaggaaaaacaacatattgaa 104266
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 3146945 cagtacagttgcccaaaaaac 3146965
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 3179363 cagtacagttgcccaaaaaac 3179383
>gb|U73024.1|U73024 Homo sapiens cosmid clone U54B12 from Xp22.1-22.2, complete sequence Length = 38476 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 77 agaaattatacaaatgattttcccttccc 105 |||||||||| |||| ||||||||||||| Sbjct: 36694 agaaattataaaaatcattttcccttccc 36722
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 3297127 cagtacagttgcccaaaaaac 3297147
>gb|M68936.1|STYPARCF Salmonella typhimurium parC and parF genes, complete cds Length = 3527 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 cagtacagttgcccaaaaaac 31 ||||||||||||||||||||| Sbjct: 2854 cagtacagttgcccaaaaaac 2834
>gb|AF117830.3| Homo sapiens chromosome 8 clone SCb-296C9 map q21.3, complete sequence Length = 73259 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 649 caccaacgcaacaggaaggaaaaacaac 676 ||||||| ||||||||||||||||||| Sbjct: 59268 caccaactgaacaggaaggaaaaacaac 59241
>gb|M88292.1|BOVRIB205 Bos taurus (clone 1) ADP-ribosylation factor 141895, exon 5 and complete cds Length = 1906 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 tggcaaaatttagcaccaac 655 |||||||||||||||||||| Sbjct: 1188 tggcaaaatttagcaccaac 1169
>gb|AC122866.4| Mus musculus BAC clone RP23-145J18 from 8, complete sequence Length = 200136 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 caagggcagcgataggaact 487 |||||||||||||||||||| Sbjct: 1106 caagggcagcgataggaact 1125
>gb|AC112258.4| Mus musculus BAC clone RP23-169M10 from 8, complete sequence Length = 203519 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattatacaaatgattttc 98 |||||||||||||||||||| Sbjct: 123572 aaattatacaaatgattttc 123591
>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence Length = 164511 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 agaaggattgcttttgccca 546 |||||||||||||||||||| Sbjct: 83993 agaaggattgcttttgccca 84012
>gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, complete sequence Length = 181179 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 663 gaaggaaaaacaacatattg 682 |||||||||||||||||||| Sbjct: 103053 gaaggaaaaacaacatattg 103034
>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5' end of the GPR64 gene for G protein-coupled receptor 64 and a CpG island, complete sequence Length = 191318 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aattatacaaatgattttcc 99 |||||||||||||||||||| Sbjct: 54687 aattatacaaatgattttcc 54706
>emb|AL513325.13| Human DNA sequence from clone RP11-332L8 on chromosome 1 Contains an H+ transporting ATPase lysosomal accessory protein 2 (ATP6AP2) pseudogene, the 5' end o the CRB1 gene for crumbs homolog 1 (Drosophila) and a mitochondrial ribosomal protein S21 (MRPS21) pseudogene, complete sequence Length = 212888 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aaaatttagctacacaacac 70 |||||||||||||||||||| Sbjct: 115903 aaaatttagctacacaacac 115884
>emb|AL390920.22| Human DNA sequence from clone RP11-384P18 on chromosome 10, complete sequence Length = 170365 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 656 gcaacaggaaggaaaaacaa 675 |||||||||||||||||||| Sbjct: 74124 gcaacaggaaggaaaaacaa 74105
>emb|AL157878.11| Human DNA sequence from clone RP11-51B13 on chromosome 13q31.1-32.1 Contains 2 novel genes, complete sequence Length = 118873 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 aaaaccgactaatacagcag 416 |||||||||||||||||||| Sbjct: 49203 aaaaccgactaatacagcag 49184
>emb|AL138768.23| Human DNA sequence from clone RP11-8L18 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), a 40S ribosomal protein S12 (RPS12) pseudogene and a 60S ribosomal protein L37 (RPL37) pseudogene, complete sequence Length = 176405 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gatgttgatgccagcaaaac 401 |||||||||||||||||||| Sbjct: 69935 gatgttgatgccagcaaaac 69916
>gb|AC131571.4| Homo sapiens chromosome 11, clone RP11-151O13, complete sequence Length = 179812 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 aagggcagcgataggaactt 488 |||||||||||||||||||| Sbjct: 35651 aagggcagcgataggaactt 35632
>emb|BX647251.1|HSM807395 Homo sapiens genomic DNA; cDNA DKFZp686C0388 (from clone DKFZp686C0388) Length = 6578 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 aattatacaaatgattttcc 99 |||||||||||||||||||| Sbjct: 1757 aattatacaaatgattttcc 1776
>emb|BX649539.6| Mouse DNA sequence from clone RP24-371A24 on chromosome 4 Contains a ribosomal protein S2 (Rps2) pseudogene, complete sequence Length = 198964 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 326 atggtaacaatgggtgcttc 345 |||||||||||||||||||| Sbjct: 183012 atggtaacaatgggtgcttc 183031
>emb|CR382328.14| Mouse DNA sequence from clone RP23-315J18 on chromosome X, complete sequence Length = 215381 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 aatggtaacaatgggtgctt 344 |||||||||||||||||||| Sbjct: 204901 aatggtaacaatgggtgctt 204920
>gb|AC107018.3| Homo sapiens 12 BAC RP11-225C14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105375 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 attatacaaatgattttccc 100 |||||||||||||||||||| Sbjct: 24371 attatacaaatgattttccc 24390
>ref|NM_174689.1| Bos taurus ADP-ribosylation factor 2 (ARF2), mRNA Length = 2269 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 tggcaaaatttagcaccaac 655 |||||||||||||||||||| Sbjct: 1619 tggcaaaatttagcaccaac 1600
>gb|AC079967.7| Homo sapiens chromosome 8, clone RP11-1058B10, complete sequence Length = 169865 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 649 caccaacgcaacaggaaggaaaaacaac 676 ||||||| ||||||||||||||||||| Sbjct: 83440 caccaactgaacaggaaggaaaaacaac 83413
>gb|AC004083.1|AC004083 Homo sapiens BAC clone CTB-109O9 from 8q21, complete sequence Length = 177726 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 649 caccaacgcaacaggaaggaaaaacaac 676 ||||||| ||||||||||||||||||| Sbjct: 159198 caccaactgaacaggaaggaaaaacaac 159171
>emb|BX470265.3| Zebrafish DNA sequence from clone CH211-87A14 in linkage group 20, complete sequence Length = 166824 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ccgggagcatgaccagtgag 459 |||||||||||||||||||| Sbjct: 115610 ccgggagcatgaccagtgag 115629
>gb|AC155170.3| Mus musculus BAC clone RP23-116K3 from chromosome 8, complete sequence Length = 228121 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaattatacaaatgattttc 98 |||||||||||||||||||| Sbjct: 203375 aaattatacaaatgattttc 203394
>gb|AC149584.4| Mus musculus BAC clone RP24-298L13 from 8, complete sequence Length = 182904 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 caagggcagcgataggaact 487 |||||||||||||||||||| Sbjct: 137340 caagggcagcgataggaact 137359
>emb|Z86001.1|HSSRL9A13 Human DNA sequence from clone XX-SRL9A13 on chromosome 11, complete sequence Length = 37136 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 aagggcagcgataggaactt 488 |||||||||||||||||||| Sbjct: 2063 aagggcagcgataggaactt 2044
>gb|M88287.1|BOVRIB2A Bos taurus ADP-ribosylation factor 2 mRNA, complete cds Length = 2268 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 636 tggcaaaatttagcaccaac 655 |||||||||||||||||||| Sbjct: 1618 tggcaaaatttagcaccaac 1599 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,745,483 Number of Sequences: 3902068 Number of extensions: 5745483 Number of successful extensions: 104354 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104179 Number of HSP's gapped (non-prelim): 175 length of query: 694 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 671 effective length of database: 17,143,297,704 effective search space: 11503152759384 effective search space used: 11503152759384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)