ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14k22 |
|---|---|
| Clone Library Name | barley_pub |
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -2 Query: 543 GPLLT-QITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGT 367 GP++T Q+T IP A IIG G I IR SGA + I E L +D + I GT Sbjct: 385 GPIITTQVT----IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 440 Query: 366 SSQVQSAQQLIQDSL 322 Q+Q+AQ L+Q+S+ Sbjct: 441 QDQIQNAQYLLQNSV 455 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -2 Query: 492 AEDIIGVKGANIAYIRANSGAVVTI-QESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 A IIGVKGA I +R N+ + + QE D V I G +V ++I D ++ Sbjct: 156 AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS- 214 Query: 315 HREPVRSSYAGLDP 274 P++ DP Sbjct: 215 -ESPIKGRAQPYDP 227
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -2 Query: 543 GPLLT-QITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGT 367 GP++T Q+T IP A IIG G I IR SGA + I E L +D + I GT Sbjct: 385 GPIITTQVT----IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 440 Query: 366 SSQVQSAQQLIQDSL 322 Q+Q+AQ L+Q+S+ Sbjct: 441 QDQIQNAQYLLQNSV 455 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -2 Query: 492 AEDIIGVKGANIAYIRANSGAVVTI-QESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 A IIGVKGA I +R N+ + + QE D V I G +V ++I D ++ Sbjct: 156 AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS- 214 Query: 315 HREPVRSSYAGLDP 274 P++ DP Sbjct: 215 -ESPIKGRAQPYDP 227
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -2 Query: 543 GPLLT-QITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGT 367 GP++T Q+T IP A IIG G I IR SGA + I E L +D + I GT Sbjct: 385 GPIITTQVT----IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 440 Query: 366 SSQVQSAQQLIQDSL 322 Q+Q+AQ L+Q+S+ Sbjct: 441 QDQIQNAQYLLQNSV 455 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -2 Query: 492 AEDIIGVKGANIAYIRANSGAVVTI-QESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 A IIGVKGA I +R N+ + + QE D V I G +V ++I D ++ Sbjct: 156 AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS- 214 Query: 315 HREPVRSSYAGLDP 274 P++ DP Sbjct: 215 -ESPIKGRAQPYDP 227
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 52.0 bits (123), Expect = 2e-06 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = -2 Query: 543 GPLLT-QITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGT 367 GP++T Q+T IP A IIG G I IR SGA + I E L +D + I GT Sbjct: 385 GPIITTQVT----IPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 440 Query: 366 SSQVQSAQQLIQDSL 322 Q+Q+AQ L+Q+S+ Sbjct: 441 QDQIQNAQYLLQNSV 455 Score = 30.8 bits (68), Expect = 4.1 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = -2 Query: 492 AEDIIGVKGANIAYIRANSGAVVTI-QESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 A IIGVKGA I +R N+ + + QE D V I G +V ++I D ++ Sbjct: 156 AGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLIS- 214 Query: 315 HREPVRSSYAGLDP 274 P++ DP Sbjct: 215 -ESPIKGRAQPYDP 227
>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375| Length = 606 Score = 41.6 bits (96), Expect = 0.002 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Frame = -2 Query: 612 SGVSLYGRDPAL-SALRPSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANS 436 SG YG PA + L +G + G L + + IP ++G G N+ IR S Sbjct: 506 SGFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRIS 565 Query: 435 GAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQ 331 GA++ I S S D + GT Q++ A+ L+Q Sbjct: 566 GAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQ 600
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = -2 Query: 531 TQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQ 352 TQ T + IP IIG +GANI IR SGA + I + V I G+++ + Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337 Query: 351 SAQQLIQDSLAAHR 310 AQ LI L++ + Sbjct: 338 LAQYLINARLSSEK 351 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAAHREP 304 IIG KG ++ IR SGA + I E G+ + + + G ++ + A +I D L E Sbjct: 28 IIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKAFAMIIDKL---EED 82 Query: 303 VRSS 292 + SS Sbjct: 83 INSS 86
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = -2 Query: 531 TQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQ 352 TQ T + IP IIG +GANI IR SGA + I + V I G+++ + Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337 Query: 351 SAQQLIQDSLAAHR 310 AQ LI L++ + Sbjct: 338 LAQYLINARLSSEK 351 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAAHREP 304 IIG KG ++ IR SGA + I E G+ + + + G ++ + A +I D L E Sbjct: 28 IIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKAFAMIIDKL---EED 82 Query: 303 VRSS 292 + SS Sbjct: 83 INSS 86
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 41.2 bits (95), Expect = 0.003 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = -2 Query: 531 TQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQ 352 TQ T + IP IIG +GANI IR SGA + I + V I G+++ + Sbjct: 278 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 337 Query: 351 SAQQLIQDSLAAHR 310 AQ LI L++ + Sbjct: 338 LAQYLINARLSSEK 351 Score = 29.6 bits (65), Expect = 9.1 Identities = 21/64 (32%), Positives = 33/64 (51%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAAHREP 304 IIG KG ++ IR SGA + I E G+ + + + G ++ + A +I D L E Sbjct: 28 IIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKAFAMIIDKL---EED 82 Query: 303 VRSS 292 + SS Sbjct: 83 INSS 86
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 37.7 bits (86), Expect = 0.033 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = -2 Query: 516 TMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESL---GSPDDITVEIKGTSSQVQSA 346 T IP +IG G N+ I +GA V I L G P+ I+G+ Q+ A Sbjct: 429 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHA 488 Query: 345 QQLIQDSLAAHREPVRSSYAGLDP 274 +QLI++ + PV G P Sbjct: 489 KQLIEEKIEGPLCPVGPGPGGPGP 512
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 36.6 bits (83), Expect = 0.074 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Frame = -2 Query: 516 TMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESL---GSPDDITVEIKGTSSQVQSA 346 T IP +IG G N+ I +GA V I L G+P I+G+ Q+ Sbjct: 426 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPTGTPTSKLFIIRGSPQQIDHC 485 Query: 345 QQLIQDSLAAHREPVRSSYAGLDP 274 +QLI++ + PV G P Sbjct: 486 RQLIEEKIEGPLCPVGPGPGGPGP 509
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 36.2 bits (82), Expect = 0.097 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -2 Query: 519 QTMQIPLTYAEDIIGV----KGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQ 352 QT LT D+IG +GA I IR SGA + I + D V I G+++ + Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 345 Query: 351 SAQQLIQDSLAAHREPVRSS 292 AQ LI L++ + SS Sbjct: 346 LAQYLINVRLSSETGGMGSS 365
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 36.2 bits (82), Expect = 0.097 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%) Frame = -2 Query: 519 QTMQIPLTYAEDIIGV----KGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQ 352 QT LT D+IG +GA I IR SGA + I + D V I G+++ + Sbjct: 283 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 342 Query: 351 SAQQLIQDSLAAHREPVRSS 292 AQ LI L++ + SS Sbjct: 343 LAQYLINVRLSSETGGMGSS 362
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 34.7 bits (78), Expect = 0.28 Identities = 27/96 (28%), Positives = 39/96 (40%) Frame = -2 Query: 603 SLYGRDPALSALRPSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVV 424 +L G+ L A P+ H + IP IIG +G I IR SGA + Sbjct: 247 NLMGQSSGLDASPPASTH-----------ELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 295 Query: 423 TIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 I + + + I GT + + AQ LI L + Sbjct: 296 KIANATEGSSERQITITGTPANISLAQYLINARLTS 331
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 34.7 bits (78), Expect = 0.28 Identities = 27/96 (28%), Positives = 39/96 (40%) Frame = -2 Query: 603 SLYGRDPALSALRPSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVV 424 +L G+ L A P+ H + IP IIG +G I IR SGA + Sbjct: 247 NLMGQSSGLDASPPASTH-----------ELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 295 Query: 423 TIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSLAA 316 I + + + I GT + + AQ LI L + Sbjct: 296 KIANATEGSSERQITITGTPANISLAQYLINARLTS 331
>YAE8_SCHPO (Q09848) Hypothetical protein C23D3.08 in chromosome I| Length = 382 Score = 34.3 bits (77), Expect = 0.37 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Frame = -2 Query: 525 ITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSA 346 ++Q M +P + + + + I N+ A +T++ES + ++ + + GTS QSA Sbjct: 264 VSQKMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEESDSNSNEKFISVVGTSEANQSA 323 Query: 345 -QQLIQDSLAAHREPVRSSYAGLD 277 QL ++ R+ V Y LD Sbjct: 324 LMQLYAALISLGRKIVSYIYVKLD 347
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 33.5 bits (75), Expect = 0.63 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Frame = -2 Query: 516 TMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESL---GSPDDITVEIKGTSSQVQSA 346 T IP +IG G N+ I GA V I L G P+ I+G+ Q++ A Sbjct: 490 TFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHA 549 Query: 345 QQLIQDSLAAHREPV 301 +Q I++ + PV Sbjct: 550 KQPIEEKIEGPLCPV 564
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = -2 Query: 564 PSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDIT 385 PS + G P +Q +P +IG +G+ I+ IR SGA + I + Sbjct: 229 PSVVPGMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERH 288 Query: 384 VEIKGTSSQVQSAQQLI 334 V I G+ + AQ LI Sbjct: 289 VTITGSPVSIALAQYLI 305 Score = 30.0 bits (66), Expect = 6.9 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = -2 Query: 543 GPLLTQITQTMQIPLTYAE--DIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKG 370 GP L+ IT T+++ + E IIG KG + IR S A +TI E P+ IT I G Sbjct: 11 GPELS-ITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-SCPERITT-ITG 67 Query: 369 TSSQVQSAQQLI 334 +++ V A +I Sbjct: 68 STAAVFHAVSMI 79
>PBP2_YEAST (P38151) PAB1-binding protein 2| Length = 413 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/76 (23%), Positives = 38/76 (50%) Frame = -2 Query: 537 LLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQ 358 L+ + Q + I + ++IG G +I ++ ++G + IQ+ + + + I+GT Sbjct: 327 LMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIRGTFMA 386 Query: 357 VQSAQQLIQDSLAAHR 310 Q+A LI + + R Sbjct: 387 SQAAIMLISNKIEIDR 402 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -2 Query: 495 YAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSL 322 +A I+G KGA I+ I++ + A + I ++ + V ++GT V A +I +L Sbjct: 77 HASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGTCDDVAKAYGMIVRAL 134
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 32.7 bits (73), Expect = 1.1 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESL---GSPDDITVEIKGTSSQVQSAQQLIQDSLAAH 313 IIG G I I SGA + +Q S P+ I+GT Q+ A+QLI++ + Sbjct: 387 IIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGP 446 Query: 312 REPV 301 P+ Sbjct: 447 VNPL 450
>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding| protein 3) Length = 572 Score = 32.3 bits (72), Expect = 1.4 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%) Frame = -2 Query: 549 GAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVE--- 379 GA + +IT T +P +IG G NI I SGA V +Q + D + Sbjct: 349 GAPGGVQEITYT--VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFT 406 Query: 378 IKGTSSQVQSAQQLIQDSL 322 I+G Q++ A+QLI + + Sbjct: 407 IRGVPQQIEVARQLIDEKV 425
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 32.0 bits (71), Expect = 1.8 Identities = 23/77 (29%), Positives = 34/77 (44%) Frame = -2 Query: 564 PSGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDIT 385 PS + G P +Q +P +IG +G+ I+ IR SGA + I + Sbjct: 229 PSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERH 288 Query: 384 VEIKGTSSQVQSAQQLI 334 V I G+ + AQ LI Sbjct: 289 VTITGSPVSIALAQYLI 305
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 31.6 bits (70), Expect = 2.4 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESL---GSPDDITVEIKGTSSQVQSAQQLIQDSLAAH 313 IIG G I I SGA + +Q + P+ I+GT Q+ A+QLI++ + Sbjct: 390 IIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGP 449 Query: 312 REPV 301 P+ Sbjct: 450 VNPL 453
>SC160_YEAST (P06105) Protein SCP160 (Protein HX)| Length = 1222 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = -2 Query: 483 IIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQDSL 322 I+G G+NI IR + ++ + +D+ V I+GT + V+ A +++ SL Sbjct: 1168 IVGPGGSNIKKIREAADVIINVPRKSDKVNDV-VYIRGTKAGVEKAGEMVLKSL 1220
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -2 Query: 513 MQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQ-ESLGSPDDITVEIKGTSSQVQSAQQL 337 M++P + IIG +GANI +R +GA + + E +G D+ + I G QV A+ Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG--DERVLLISGFPVQVCKAKAA 114 Query: 336 IQDSL 322 I L Sbjct: 115 IHQIL 119 Score = 30.0 bits (66), Expect = 6.9 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = -2 Query: 531 TQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTI-QESLGS-PDDITVEIKGTSSQ 358 T +++ + +P IIG G I I SGA +T +ES G+ ++I GT + Sbjct: 123 TPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKE 182 Query: 357 VQSAQQLIQDSLAAHRE 307 V +A+ LI + ++ E Sbjct: 183 VAAAKHLILEKVSEDEE 199
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 30.4 bits (67), Expect = 5.3 Identities = 30/112 (26%), Positives = 43/112 (38%) Frame = -1 Query: 622 HSSLRRVTIWTRSCIVSITAFWNAWCWPSTYADNTNHANPTYICGRYHRGQRSKHCIHTG 443 H S +++ R+ S++ F+N N A P CG + G C G Sbjct: 1410 HISPSSSSLFCRNAAASLSLFYN------------NGARP---CGCHEVGATGPTCEPFG 1454 Query: 442 *QWCCCHNSREFGKP**YNC*NKGDVVPGTICPTAYPGFPGCAQRTCEEQLC 287 Q C CH + G+ +C + C T Y GFP C C +LC Sbjct: 1455 GQ-CPCH-AHVIGR----DC---------SRCATGYWGFPNCRPCDCGARLC 1491
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 30.4 bits (67), Expect = 5.3 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Frame = -2 Query: 513 MQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQ-ESLGSPDDITVEIKGTSSQVQSAQQL 337 M++P + IIG +GANI +R +GA + + E +G D+ + I G QV A+ Sbjct: 57 MRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG--DERVLLISGFPVQVCKAKAA 114 Query: 336 IQDSL 322 I L Sbjct: 115 IHQIL 119
>VIGLN_CHICK (P81021) Vigilin| Length = 1270 Score = 30.0 bits (66), Expect = 6.9 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = -2 Query: 495 YAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQ 331 Y + +IG G NI +R N+GA + S D + I GT V+ AQ+ ++ Sbjct: 738 YHKFLIGKGGGNIRKVRDNTGARIIFPTS-EDKDQELITIMGTEEAVKEAQKELE 791
>SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit| Length = 949 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -2 Query: 447 RANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQ 331 R N A+ T+ L PDD+ +E K + ++SAQ ++ Sbjct: 593 RFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVE 631
>SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit| Length = 949 Score = 29.6 bits (65), Expect = 9.1 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -2 Query: 447 RANSGAVVTIQESLGSPDDITVEIKGTSSQVQSAQQLIQ 331 R N A+ T+ L PDD+ +E K + ++SAQ ++ Sbjct: 593 RFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVE 631
>VIPR_CARAU (Q90308) Vasoactive intestinal polypeptide receptor (VIP-R) (VIP| receptor) Length = 447 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +2 Query: 473 TPMISSAYVSGICMVCVICVSRGPAPCIPEGRNADNAGSR 592 TP+++S ++ I +C+I + R C GRN N SR Sbjct: 263 TPILASILMNFILFICIIRILRQKINCPDIGRNESNQYSR 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,294,603 Number of Sequences: 219361 Number of extensions: 2279318 Number of successful extensions: 6861 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 6478 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6854 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6856295237 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
