ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14k15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PNS1_GIBZE (Q4I8E9) Protein PNS1 34 0.36
2PURQ_STAES (Q8CPP0) Phosphoribosylformylglycinamidine synthase I... 30 9.0
3PURQ_STAEQ (Q5HQA2) Phosphoribosylformylglycinamidine synthase I... 30 9.0

>PNS1_GIBZE (Q4I8E9) Protein PNS1|
          Length = 538

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 121 LYKCLSCLRRAPDWAVSFKFDWLFXHLYLYGRA 23
           ++ C+SCL    +WAV F   + F H+ LYG+A
Sbjct: 378 IFCCISCLLGLLEWAVEFINRYAFCHIALYGKA 410



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>PURQ_STAES (Q8CPP0) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 223

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  GALLKHDKHLYSKRHHAVIVHNNGIIYEHL-VNNPN 191
           GALL +D HL+  R+  + + NN   + HL V N N
Sbjct: 99  GALLHNDSHLFISRNETLKITNNQTPFTHLYVKNEN 134



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>PURQ_STAEQ (Q5HQA2) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 223

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 87  GALLKHDKHLYSKRHHAVIVHNNGIIYEHL-VNNPN 191
           GALL +D HL+  R+  + + NN   + HL V N N
Sbjct: 99  GALLHNDSHLFISRNETLKITNNQTPFTHLYVKNEN 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,654,257
Number of Sequences: 219361
Number of extensions: 1860754
Number of successful extensions: 3919
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3917
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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