>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU|
          Length = 310

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -3

Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYXG-----PESIGS--GVKAAIKEKFPDITNV 182
           RP I   GG VE++ +DG+D  V+  G      +S G+  GV+A + E   +   V
Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300

>HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYXGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142

>HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYXGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142

>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPXYLTR 266
           W+ TTF+     + +  FT L +DS P YL R
Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205

>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPXYLTR 266
           W+ TTF+     + +  FT L +DS P YL R
Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205

>DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2|
          Length = 307

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 325 PAIANYGGSVEVLAVDGEDCLVKYXGPESIGSGVKAAIKEK-FPD 194
           P+ A  GG++EV+ +DG   LVK   P  + +G K  + +K FP+
Sbjct: 220 PSEAILGGAIEVMTIDG---LVKMTVPAGLKNGQKLRLAKKGFPN 261

>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1261

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYXGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 699 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 745

>PQQE_BRAJA (Q89FG1) Coenzyme PQQ synthesis protein E (Pyrroloquinoline quinone|
           biosynthesis protein E)
          Length = 380

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/86 (23%), Positives = 34/86 (39%)
 Frame = +2

Query: 17  PFDFPSCVATFSTQRKHRNSCLDETSKILLXFVHVAIYCTGVASSQPTCRSLGEHHIRDV 196
           P   P C       R  +    DE  K+L     + +     +  +PT R       +D+
Sbjct: 27  PLQCPYCSNPVELDRSGKELTTDEWKKVLSELAEIGVLQVHFSGGEPTAR-------KDL 79

Query: 197 GELLLDGCLHSTPDGLWAXVLNQAVL 274
            EL+     H++  GL+  ++  AVL
Sbjct: 80  VELV----KHASDVGLYTNLITSAVL 101

>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYXGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 701 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 747

>IST2_YEAST (P38250) Increased sodium tolerance protein 2|
          Length = 946

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = +3

Query: 3   TQKLLHLIFHRVLQLFLPKGNIETLV*TKHRKSCXISYMSPFTALEWHQA---SRPVDH- 170
           TQKL   +++ VL +F   G + T   T   +SC I  +   T++  ++A   + P++H 
Sbjct: 503 TQKLTVGLWNSVLVMFSILGCVITATLTYMYQSCNIPGVGAHTSIHTNKAWYLANPINHS 562

Query: 171 WVN 179
           W+N
Sbjct: 563 WIN 565

>BIRC6_HUMAN (Q9NR09) Baculoviral IAP repeat-containing protein 6|
           (Ubiquitin-conjugating BIR-domain enzyme apollon)
          Length = 4829

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 143 ASSQPTCRSLGEHHIRDVGELLL--DGCLHSTPDGLWAXVLNQAVLAV 280
           A+S P C S        V E L+  DGC+H   DGL +   + A+ A+
Sbjct: 7   AASGPGCSSAAGAGAAGVSEWLVLRDGCMHCDADGLHSLSYHPALNAI 54

>DNAJ_WOLPM (Q73IV4) Chaperone protein dnaJ|
          Length = 372

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 331 LRPAIANYGGSVEVLAVDGEDCLVKYXGPESIGSGVKAAIKEK 203
           +R  +A  GG +++ ++DG    VK   PE   +G K   +EK
Sbjct: 272 IRMTLAVLGGEIDIQSIDGAKIKVKV--PEGTQTGTKLRCREK 312

>Y2806_VIBCH (Q9KNF8) UPF0082 protein VCA0006|
          Length = 239

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 295 EVLAVDGEDCLVKYXGPESIGSGVKAAIKEKFPDIT 188
           EV  ++ ED ++    P +    VK A+ E FPD+T
Sbjct: 157 EVTDIEHEDGVITVFAPNTEFFKVKTALNEAFPDLT 192

>FADA_YERPS (Q66FR9) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation|
           complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA
           acyltransferase)
          Length = 387

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 215 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNXTRFS 93
           H G VP +H    HP     + ++AG+M L       + N +R S
Sbjct: 120 HMGHVPMNHGVDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQS 164

>FADA_YERPE (Q8ZAM9) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation|
           complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA
           acyltransferase)
          Length = 387

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 215 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNXTRFS 93
           H G VP +H    HP     + ++AG+M L       + N +R S
Sbjct: 120 HMGHVPMNHGVDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQS 164

>ERB1_HUMAN (P60509) HERV-R(b)_3p24.3 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (HERV-R(b) Env protein)
           [Includes: Surface protein domain (SU); Transmembrane
           protein domain (TM)]
          Length = 514

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 114 YMSPFTALEWHQASRPVDHWVNTTFVM 194
           ++S    L W Q +  +D+W NTT VM
Sbjct: 205 HLSQIAPLCWEQRNHSLDNWPNTTRVM 231

>FADA_ERWCT (Q6DAP6) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation|
           complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA
           acyltransferase)
          Length = 387

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = -2

Query: 215 HQGEVPRHHECGVHP----VIYRSAGLMPLQCSKWRHVRNXTR 99
           H G VP +H    HP     I ++AG+M L       + N +R
Sbjct: 120 HMGHVPMNHGVDFHPGLSRTIAKAAGMMGLTAEMLARMHNISR 162

>J1I_HCMVA (P09711) Hypothetical protein HKRFX (J1I)|
          Length = 277

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 296 HTPAVVRDRRTQYVQVPVHRL 358
           H PAV R RRTQ+   P H L
Sbjct: 80  HAPAVRRQRRTQHAYGPQHSL 100

>DNAJ_WOLTR (Q5GRK1) Chaperone protein dnaJ|
          Length = 374

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 331 LRPAIANYGGSVEVLAVDGEDCLVKYXGPESIGSGVKAAIKEK 203
           +R  +A  GG ++V ++DG    VK   PE   +  K   KEK
Sbjct: 274 IRMTLAVLGGEIDVQSIDGAKIKVKV--PEGTQTSTKLRCKEK 314

>ATL2C_ARATH (Q9ZV53) Putative RING-H2 finger protein ATL2C|
          Length = 423

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 8   KITPFDFPSCVATFSTQRKHR 70
           KI+PFD P C+  F T+ K R
Sbjct: 120 KISPFDCPVCLCEFETEDKLR 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,116,934
Number of Sequences: 219361
Number of extensions: 1047446
Number of successful extensions: 2883
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2883
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)