Clone Name | rbasd14k05 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 123 bits (62), Expect = 7e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 265 cgtccccggcgggctgtagtagtcctggtagtacgactccggcgacgcgtgcgggtacgg 324 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct: 12880866 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12880925 Query: 325 catgtaaaggtacgacggcgaccattgctgctgc 358 |||||| ||||||||||||||||| ||||||||| Sbjct: 12880926 catgtacaggtacgacggcgaccactgctgctgc 12880959 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/77 (88%) Strand = Plus / Plus Query: 429 gctccggntgnggcgcgtantaggacacgctcgttcccggctgcgccgtgtggtagctca 488 ||||||| | |||||||| ||||| |||||||| |||||||||| |||||||||||| Sbjct: 12881066 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12881125 Query: 489 tcaccggctgcggcgcg 505 ||||||||||||||||| Sbjct: 12881126 tcaccggctgcggcgcg 12881142 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcgagcaggcgatacgagtcctggag 237 ||||||||||||||| | |||||||||||||||||||| || ||| ||| |||||| || Sbjct: 12880791 tcacatgacgctgcaggcgttggggttctcgtcgtcgaacatgcggtactcgtcctgcag 12880850 Query: 238 cggcg 242 ||||| Sbjct: 12880851 cggcg 12880855 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 11385904 gcggcgccggcggtggtggcggcg 11385927 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcg 257 |||||||||||||||||||| Sbjct: 7910081 cggcgccggaggtggtggcg 7910100 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 4462762 gcggcgccgggggtggtggcggcg 4462785 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 4457660 gcggcgccgggggtggtggcggcg 4457683 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 3028744 acatgacggcgcaggagttggggttctcgtcg 3028775
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 123 bits (62), Expect = 7e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 265 cgtccccggcgggctgtagtagtcctggtagtacgactccggcgacgcgtgcgggtacgg 324 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct: 119082 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 119141 Query: 325 catgtaaaggtacgacggcgaccattgctgctgc 358 |||||| ||||||||||||||||| ||||||||| Sbjct: 119142 catgtacaggtacgacggcgaccactgctgctgc 119175 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/77 (88%) Strand = Plus / Plus Query: 429 gctccggntgnggcgcgtantaggacacgctcgttcccggctgcgccgtgtggtagctca 488 ||||||| | |||||||| ||||| |||||||| |||||||||| |||||||||||| Sbjct: 119282 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 119341 Query: 489 tcaccggctgcggcgcg 505 ||||||||||||||||| Sbjct: 119342 tcaccggctgcggcgcg 119358 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcgagcaggcgatacgagtcctggag 237 ||||||||||||||| | |||||||||||||||||||| || ||| ||| |||||| || Sbjct: 119007 tcacatgacgctgcaggcgttggggttctcgtcgtcgaacatgcggtactcgtcctgcag 119066 Query: 238 cggcg 242 ||||| Sbjct: 119067 cggcg 119071
>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0094H06, from chromosome 3, complete sequence Length = 118075 Score = 123 bits (62), Expect = 7e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 265 cgtccccggcgggctgtagtagtcctggtagtacgactccggcgacgcgtgcgggtacgg 324 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct: 58643 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 58584 Query: 325 catgtaaaggtacgacggcgaccattgctgctgc 358 |||||| ||||||||||||||||| ||||||||| Sbjct: 58583 catgtacaggtacgacggcgaccactgctgctgc 58550 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/77 (88%) Strand = Plus / Minus Query: 429 gctccggntgnggcgcgtantaggacacgctcgttcccggctgcgccgtgtggtagctca 488 ||||||| | |||||||| ||||| |||||||| |||||||||| |||||||||||| Sbjct: 58443 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 58384 Query: 489 tcaccggctgcggcgcg 505 ||||||||||||||||| Sbjct: 58383 tcaccggctgcggcgcg 58367 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcgagcaggcgatacgagtcctggag 237 ||||||||||||||| | |||||||||||||||||||| || ||| ||| |||||| || Sbjct: 58718 tcacatgacgctgcaggcgttggggttctcgtcgtcgaacatgcggtactcgtcctgcag 58659 Query: 238 cggcg 242 ||||| Sbjct: 58658 cggcg 58654
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 123 bits (62), Expect = 7e-25 Identities = 86/94 (91%) Strand = Plus / Plus Query: 265 cgtccccggcgggctgtagtagtcctggtagtacgactccggcgacgcgtgcgggtacgg 324 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct: 12877629 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 12877688 Query: 325 catgtaaaggtacgacggcgaccattgctgctgc 358 |||||| ||||||||||||||||| ||||||||| Sbjct: 12877689 catgtacaggtacgacggcgaccactgctgctgc 12877722 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/77 (88%) Strand = Plus / Plus Query: 429 gctccggntgnggcgcgtantaggacacgctcgttcccggctgcgccgtgtggtagctca 488 ||||||| | |||||||| ||||| |||||||| |||||||||| |||||||||||| Sbjct: 12877829 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 12877888 Query: 489 tcaccggctgcggcgcg 505 ||||||||||||||||| Sbjct: 12877889 tcaccggctgcggcgcg 12877905 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcgagcaggcgatacgagtcctggag 237 ||||||||||||||| | |||||||||||||||||||| || ||| ||| |||||| || Sbjct: 12877554 tcacatgacgctgcaggcgttggggttctcgtcgtcgaacatgcggtactcgtcctgcag 12877613 Query: 238 cggcg 242 ||||| Sbjct: 12877614 cggcg 12877618 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 11382667 gcggcgccggcggtggtggcggcg 11382690 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcg 257 |||||||||||||||||||| Sbjct: 7907916 cggcgccggaggtggtggcg 7907935 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 4462877 gcggcgccgggggtggtggcggcg 4462900 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 4457775 gcggcgccgggggtggtggcggcg 4457798 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 3028855 acatgacggcgcaggagttggggttctcgtcg 3028886
>dbj|AK066080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051K22, full insert sequence Length = 1071 Score = 123 bits (62), Expect = 7e-25 Identities = 86/94 (91%) Strand = Plus / Minus Query: 265 cgtccccggcgggctgtagtagtcctggtagtacgactccggcgacgcgtgcgggtacgg 324 |||||||||||||||||||||||| ||||||| | |||||||||| |||||||||||| Sbjct: 684 cgtccccggcgggctgtagtagtcgcggtagtaggtgtccggcgacgagtgcgggtacgg 625 Query: 325 catgtaaaggtacgacggcgaccattgctgctgc 358 |||||| ||||||||||||||||| ||||||||| Sbjct: 624 catgtacaggtacgacggcgaccactgctgctgc 591 Score = 87.7 bits (44), Expect = 4e-14 Identities = 68/77 (88%) Strand = Plus / Minus Query: 429 gctccggntgnggcgcgtantaggacacgctcgttcccggctgcgccgtgtggtagctca 488 ||||||| | |||||||| ||||| |||||||| |||||||||| |||||||||||| Sbjct: 484 gctccggccgcggcgcgtagtaggagacgctcgtcgtcggctgcgccatgtggtagctca 425 Query: 489 tcaccggctgcggcgcg 505 ||||||||||||||||| Sbjct: 424 tcaccggctgcggcgcg 408 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcgagcaggcgatacgagtcctggag 237 ||||||||||||||| | |||||||||||||||||||| || ||| ||| |||||| || Sbjct: 759 tcacatgacgctgcaggcgttggggttctcgtcgtcgaacatgcggtactcgtcctgcag 700 Query: 238 cggcg 242 ||||| Sbjct: 699 cggcg 695
>gb|AY108718.1| Zea mays PCO111663 mRNA sequence Length = 435 Score = 83.8 bits (42), Expect = 6e-13 Identities = 91/106 (85%), Gaps = 6/106 (5%) Strand = Plus / Minus Query: 254 ggcggcgcgtgcgtccccggcgggctgtagtagtcctg---gtagtacgactccggcgac 310 |||| ||||||| |||| ||||||| |||||||||||| |||||| | |||||||| | Sbjct: 187 ggcgacgcgtgcatcccgggcgggccgtagtagtcctgctggtagtaaggctccggcgcc 128 Query: 311 gcg---tgcgggtacggcatgtaaaggtacgacggcgaccattgct 353 ||| ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 127 gcggcgtgcgggtacggcatgtacaggtacgacggcgaccactgct 82 Score = 67.9 bits (34), Expect = 3e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 178 tcacatgacgctgcacgagttggggttctcgtcgtcga 215 ||||||||||||||| |||||||||||||||||||||| Sbjct: 251 tcacatgacgctgcaggagttggggttctcgtcgtcga 214
>ref|XM_479462.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1243 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gtagctcatcaccggctgcggcgcgttgtacggg 514 ||||||||||||||||||||||| || ||||||| Sbjct: 751 gtagctcatcaccggctgcggcgagtagtacggg 718
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gtagctcatcaccggctgcggcgcgttgtacggg 514 ||||||||||||||||||||||| || ||||||| Sbjct: 28330053 gtagctcatcaccggctgcggcgagtagtacggg 28330020
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 481 gtagctcatcaccggctgcggcgcgttgtacggg 514 ||||||||||||||||||||||| || ||||||| Sbjct: 55616 gtagctcatcaccggctgcggcgagtagtacggg 55583
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcggcgc 261 |||||||||||||||||||||||| Sbjct: 8255974 cggcgccggaggtggtggcggcgc 8255997
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcggcgc 261 |||||||||||||||||||||||| Sbjct: 148337 cggcgccggaggtggtggcggcgc 148360
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 48.1 bits (24), Expect = 0.032 Identities = 24/24 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcggcgc 261 |||||||||||||||||||||||| Sbjct: 49479 cggcgccggaggtggtggcggcgc 49502
>ref|XM_475133.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1023 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Minus Query: 178 tcacatgacgctgcacgagttggggttctcgtcg 211 ||||||||||||||| ||||||| ||| |||||| Sbjct: 1023 tcacatgacgctgcaagagttggcgttgtcgtcg 990
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 178 tcacatgacgctgcacgagttggggttctcgtcg 211 ||||||||||||||| ||||||| ||| |||||| Sbjct: 100076 tcacatgacgctgcaagagttggcgttgtcgtcg 100109
>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster Length = 89976 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 tggcggcgcgtgcgtccccggcgggc 278 |||||||||||||||||| ||||||| Sbjct: 15627 tggcggcgcgtgcgtcccgggcgggc 15652
>emb|AJ605139.1| Actinoplanes teichomyceticus gene cluster for biosynthesis of glycopeptide antibiotic teicoplanin Length = 89713 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 253 tggcggcgcgtgcgtccccggcgggc 278 |||||||||||||||||| ||||||| Sbjct: 22234 tggcggcgcgtgcgtcccgggcgggc 22259
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 cacgctcgttcccggctgcgcc 475 |||||||||||||||||||||| Sbjct: 3188869 cacgctcgttcccggctgcgcc 3188890
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Plus Query: 178 tcacatgacgctgcacgagttggggttctcgtcg 211 ||||||||||||||| ||||||| ||| |||||| Sbjct: 17570271 tcacatgacgctgcaagagttggcgttgtcgtcg 17570304
>dbj|AK067933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128A09, full insert sequence Length = 1243 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Minus Query: 481 gtagctcatcaccggctgcggcgcgttgtacggg 514 ||||||||||||||||| ||||| || ||||||| Sbjct: 751 gtagctcatcaccggcttcggcgagtagtacggg 718
>dbj|AK058953.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A11, full insert sequence Length = 1133 Score = 44.1 bits (22), Expect = 0.49 Identities = 31/34 (91%) Strand = Plus / Minus Query: 178 tcacatgacgctgcacgagttggggttctcgtcg 211 ||||||||||||||| ||||||| ||| |||||| Sbjct: 1087 tcacatgacgctgcaagagttggcgttgtcgtcg 1054
>ref|NM_197294.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.11), mRNA Length = 969 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 894 cgccggaggtggtggcggcgc 874
>gb|AC091122.10| Oryza sativa chromosome 10 BAC OSJNBb0091N21 genomic sequence, complete sequence Length = 151991 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 3987 cgccggaggtggtggcggcgc 3967
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 27248 cgccggaggtggtggcggcgc 27268
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 19074677 cgccggaggtggtggcggcgc 19074697
>dbj|AK059482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F06, full insert sequence Length = 1287 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 848 cgccggaggtggtggcggcgc 868
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 cgccggaggtggtggcggcgc 261 ||||||||||||||||||||| Sbjct: 19085953 cgccggaggtggtggcggcgc 19085973
>gb|AC154042.1| Drosophila melanogaster clone BACR46E23, complete sequence Length = 181148 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 179134 gcggcggcggaggtggtggcggcg 179157
>gb|AC108768.14| Mus musculus chromosome 8, clone RP23-398L15, complete sequence Length = 209808 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aaaaaagaagaggaacaagg 21 |||||||||||||||||||| Sbjct: 21653 aaaaaagaagaggaacaagg 21672
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gtacgccgtacgtgtcggtg 171 |||||||||||||||||||| Sbjct: 622314 gtacgccgtacgtgtcggtg 622333
>ref|XM_470243.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 466 acatgacggcgcaggagttggggttctcgtcg 435
>gb|AC132211.1| Caenorhabditis elegans cosmid Y108F1, complete sequence Length = 25545 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 4959 gcggcggcggaggtggtggcggcg 4982
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 cgccggaggtggtggcggcg 260 |||||||||||||||||||| Sbjct: 1309493 cgccggaggtggtggcggcg 1309474
>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14, complete sequence Length = 262688 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 2 aaaaaagaagaggaacaaggagag 25 ||||||||||||||| |||||||| Sbjct: 8926 aaaaaagaagaggaagaaggagag 8903
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 tcatcaccggctgcggcgcg 505 |||||||||||||||||||| Sbjct: 3309933 tcatcaccggctgcggcgcg 3309914
>gb|AC112496.2| Homo sapiens X BAC RP11-242C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166765 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaagaagaggaacaagga 22 |||||||||||||||||||| Sbjct: 144131 aaaaagaagaggaacaagga 144150
>gb|AC157360.9| Mus musculus chromosome 8, clone RP23-420E22, complete sequence Length = 195633 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 aaaaaagaagaggaacaagg 21 |||||||||||||||||||| Sbjct: 30210 aaaaaagaagaggaacaagg 30191
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 67517 acatgacggcgcaggagttggggttctcgtcg 67486
>gb|AC107065.5| Bos taurus clone rp42-513g13, complete sequence Length = 175949 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 aaagaagaggaacaaggagagctt 28 ||||||||||||||||||| |||| Sbjct: 108547 aaagaagaggaacaaggagggctt 108524
>gb|AC023691.3| Drosophila melanogaster X BAC RP98-12H1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179892 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 51397 gcggcggcggaggtggtggcggcg 51420
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gcggcgccggaggtggtggc 256 |||||||||||||||||||| Sbjct: 327732 gcggcgccggaggtggtggc 327713
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 236 agcggcgccggaggtggtggcggc 259 ||||||| |||||||||||||||| Sbjct: 3399154 agcggcggcggaggtggtggcggc 3399177
>ref|NM_132535.2| Drosophila melanogaster Selenoprotein G CG1844-RA (SelG), mRNA Length = 835 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 314 gcggcggcggaggtggtggcggcg 337
>gb|AF457462.1| Myxococcus xanthus putative oxidoreductase, matrix-associated zinc metalloprotease FibA (fibA), and putative phosphoesterase genes, complete cds Length = 5690 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 470 tgcgccgtgtggtagctcatcacc 493 ||||||||||||||| |||||||| Sbjct: 1201 tgcgccgtgtggtagttcatcacc 1224
>dbj|AK141597.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630038K16 product:sarcolemma associated protein, full insert sequence Length = 4617 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 60 gcggcggcggaggtggtggcggcg 83
>dbj|AK166396.1| Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDNA, RIKEN full-length enriched library, clone:G930008I16 product:sarcolemma associated protein, full insert sequence Length = 2418 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 60 gcggcggcggaggtggtggcggcg 83
>dbj|AK164911.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030019G02 product:sarcolemma associated protein, full insert sequence Length = 2417 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 59 gcggcggcggaggtggtggcggcg 82
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 166231 acatgacggcgcaggagttggggttctcgtcg 166262
>gb|AF396454.1|AF396454 Drosophila melanogaster G-rich selenoprotein mRNA, complete cds Length = 849 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 314 gcggcggcggaggtggtggcggcg 337
>gb|AC125471.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0042J17, complete sequence Length = 171442 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 68054 gcggcgccgggggtggtggcggcg 68077 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 62952 gcggcgccgggggtggtggcggcg 62975
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 94201 gcggcgccggcggtggtggcggcg 94224
>gb|AC134235.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030J04, complete sequence Length = 153431 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cggcgccggaggtggtggcg 257 |||||||||||||||||||| Sbjct: 95679 cggcgccggaggtggtggcg 95698
>gb|AY060611.1| Drosophila melanogaster GH03581 full insert cDNA Length = 849 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 314 gcggcggcggaggtggtggcggcg 337
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gccggaggtggtggcggcgc 261 |||||||||||||||||||| Sbjct: 2765078 gccggaggtggtggcggcgc 2765059
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 accggctgcggcgcgttgta 510 |||||||||||||||||||| Sbjct: 898633 accggctgcggcgcgttgta 898614
>ref|XM_308787.2| Anopheles gambiae str. PEST ENSANGP00000015166 (ENSANGG00000012677), mRNA Length = 1096 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 232 ctggagcggcgccggaggtggtggcggc 259 ||||||| ||| |||||||||||||||| Sbjct: 217 ctggagcagcggcggaggtggtggcggc 244
>dbj|AK105367.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-119-G06, full insert sequence Length = 822 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 180 acatgacgctgcacgagttggggttctcgtcg 211 |||||||| ||| |||||||||||||||||| Sbjct: 545 acatgacggcgcaggagttggggttctcgtcg 514
>dbj|AK069314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011A15, full insert sequence Length = 2282 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||||||| ||||||||||||| Sbjct: 142 gcggcgccgggggtggtggcggcg 119
>gb|U70376.2|U70376 Streptomyces flavopersicus spectinomycin biosynthesis gene cluster, complete sequence Length = 29606 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gccggaggtggtggcggcgc 261 |||||||||||||||||||| Sbjct: 29036 gccggaggtggtggcggcgc 29017
>gb|AF061107.1|AF061107 Zea mays transcription factor MYC7E mRNA, partial cds Length = 2503 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 238 cggcgccggaggtggtggcggcgcgtgc 265 ||||||||| || ||||||||||||||| Sbjct: 999 cggcgccggcgggggtggcggcgcgtgc 972
>gb|AE003487.2| Drosophila melanogaster chromosome X, section 39 of 74 of the complete sequence Length = 308317 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 178838 gcggcggcggaggtggtggcggcg 178861
>emb|AL844840.8| Mouse DNA sequence from clone RP23-337P9 on chromosome 2, complete sequence Length = 219568 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 aagaagaggaacaaggagag 25 |||||||||||||||||||| Sbjct: 32587 aagaagaggaacaaggagag 32606
>emb|AJ628642.1| Streptomyces hygroscopicus subsp. hygroscopicus genomic region of the gene cluster for hygromycin B biosynthetis, strain DSM 40578 Length = 34921 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 gccggaggtggtggcggcgc 261 |||||||||||||||||||| Sbjct: 34438 gccggaggtggtggcggcgc 34419
>gb|AC132111.4| Mus musculus BAC clone RP24-200H19 from 14, complete sequence Length = 174164 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gcggcgccggaggtggtggcggcg 260 |||||| ||||||||||||||||| Sbjct: 79647 gcggcggcggaggtggtggcggcg 79624 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,356,174 Number of Sequences: 3902068 Number of extensions: 3356174 Number of successful extensions: 68579 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67218 Number of HSP's gapped (non-prelim): 1360 length of query: 567 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 544 effective length of database: 17,143,297,704 effective search space: 9325953950976 effective search space used: 9325953950976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)