ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14k04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017853.1| Zea mays clone EL01N0511C02.c mRNA sequence 303 4e-79
2ref|XM_550136.1| Oryza sativa (japonica cultivar-group), mRNA 301 2e-78
3dbj|AK121921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 2e-78
4gb|AY104326.1| Zea mays PCO064465 mRNA sequence 281 1e-72
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
6dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
7dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D... 133 8e-28
8ref|NM_102946.3| Arabidopsis thaliana unknown protein AT1G32130 ... 62 3e-06
9gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 46 0.15
10ref|XM_483143.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.60
11ref|XM_483144.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.60
12gb|AE006465.1| Homo sapiens 16p13.3 sequence section 4 of 8 44 0.60
13gb|AC009041.10| Homo sapiens chromosome 16 clone RP11-161M6, com... 44 0.60
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
15dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
16dbj|AK067229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
17dbj|AK067381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
18gb|AF251068.2| Oryza sativa (japonica cultivar-group) alkaline a... 44 0.60
19emb|AL024496.7|HS422E10 Human DNA sequence from clone LA16-422E1... 44 0.60
20gb|AC163617.5| Mus musculus BAC clone RP23-115O21 from chromosom... 42 2.4
21gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 2.4
22gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, comple... 42 2.4
23gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
24gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequ... 42 2.4
25gb|AC155810.5| Mus musculus BAC clone RP24-181I18 from chromosom... 42 2.4
26emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 i... 42 2.4
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
28emb|AL591769.3|CNS07EGM Human chromosome 14 DNA sequence BAC R-6... 42 2.4
29emb|CR627488.8| Zebrafish DNA sequence from clone CH211-242B23 i... 42 2.4
30emb|AL591771.1|CNS07EGO Human chromosome 14 DNA sequence BAC R-7... 42 2.4
31ref|XM_457530.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 9.4
32ref|XM_706922.1| Candida albicans SC5314 hypothetical protein (C... 40 9.4
33ref|XM_706901.1| Candida albicans SC5314 hypothetical protein (C... 40 9.4
34gb|AC112671.25| Mus musculus chromosome 13, clone RP24-299O19, c... 40 9.4
35gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome... 40 9.4
36gb|AC073236.8| Homo sapiens BAC clone RP11-774B15 from 7, comple... 40 9.4
37emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 40 9.4
38emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 9.4
39emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 9.4
40gb|AC022239.16| Homo sapiens chromosome 8, clone RP11-148O21, co... 40 9.4
41gb|AC122110.4| Mus Musculus Strain C57BL6/J Chromosome 2 BAC, RP... 40 9.4
42gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (PO... 40 9.4
43gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosom... 40 9.4
44gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, comple... 40 9.4
45emb|AL136120.8| Human DNA sequence from clone RP5-975D15 on chro... 40 9.4
46gb|AC153562.2| Mus musculus 10 BAC RP23-143D12 (Roswell Park Can... 40 9.4
47emb|CT485675.4| RP43-034D18, complete sequence 40 9.4
48gb|AC153560.5| Mus musculus 10 BAC RP23-376E10 (Roswell Park Can... 40 9.4
49emb|AL929138.15| Mouse DNA sequence from clone RP23-395O2 on chr... 40 9.4
50emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, co... 40 9.4
51emb|Z68003.1|CEE02H4 Caenorhabditis elegans Cosmid E02H4, comple... 40 9.4
52emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chro... 40 9.4
53emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chr... 40 9.4
54gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Canc... 40 9.4 
>gb|BT017853.1| Zea mays clone EL01N0511C02.c mRNA sequence
          Length = 882

 Score =  303 bits (153), Expect = 4e-79
 Identities = 263/297 (88%), Gaps = 2/297 (0%)
 Strand = Plus / Minus

                                                                       
Query: 393 tacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggtttttc 452
           |||| |||||||| ||| ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 553 tacaggtacttgatcatgccacggccttccacgctgagcttcgacgcctgaaggtttttc 494

                                                                       
Query: 453 ttctttggcgctttcagctgctgcagtttcttgttcatcttcagccgacgctggtcttga 512
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 493 ttcttgggcgctttcagctgctgcaatttcttgttcatcttcagccgacgctggtcttgg 434

                                                                       
Query: 513 acttgttgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaatg 572
           ||    ||||||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 433 acagcctgcttagcacgagcccgtatctgctcagggtcaattttggactgtggacgaatg 374

                                                                       
Query: 573 acaaagtccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgcccg 632
           |||||||||| ||| || ||||| |||||||||||||||||||| |||| ||||||||| 
Sbjct: 373 acaaagtccaaaggcgaggcttccggcctagaagcatgctgccttgaactactttgccca 314

                                                                    
Query: 633 gacttgcgctgaggagaagtcagcatcaagatcatcgtcttcggggttccattccag 689
           |||||||| ||  || |||||||||||||||||||| || || || |||||||||||
Sbjct: 313 gacttgcgttg-tgaaaagtcagcatcaagatcatcatc-tctggattccattccag 259
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>ref|XM_550136.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2134

 Score =  301 bits (152), Expect = 2e-78
 Identities = 249/280 (88%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                        
Query: 392  ttacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggttttt 451
            |||||||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 1699 ttacaagtacttgatcattccacgcccttcaacactgagttttgacgcctgaaggttttt 1640

                                                                        
Query: 452  cttctttggcgctttcagctgctgcagtttcttgttcatcttcagccgacgctggtcttg 511
            ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 1639 cttctttggtgctttcagctgctgcaatttcttgttcatctttagccggcgctggtcttg 1580

                                                                        
Query: 512  aacttgttgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaat 571
             ||    ||||||||||||||||  || || ||||||||||||||||| || || |||||
Sbjct: 1579 gacaacctgcttagcacgagccctaatttgttcgggatcaattttggactgcgggcgaat 1520

                                                                        
Query: 572  gacaaagtccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgccc 631
             ||||||||||  |||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct: 1519 aacaaagtccaagggtgatgcttctggcctagaagcatgctgccttgcaccaccttgccc 1460

                                                    
Query: 632  ggacttgcgctgaggagaagtcagcatcaagatcatcgtc 671
             |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1459 agacttgcgctga-gagaagtcagcatcaagatcatcgtc 1421
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>dbj|AK121921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106E16, full
            insert sequence
          Length = 2134

 Score =  301 bits (152), Expect = 2e-78
 Identities = 249/280 (88%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                        
Query: 392  ttacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggttttt 451
            |||||||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 1699 ttacaagtacttgatcattccacgcccttcaacactgagttttgacgcctgaaggttttt 1640

                                                                        
Query: 452  cttctttggcgctttcagctgctgcagtttcttgttcatcttcagccgacgctggtcttg 511
            ||||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 1639 cttctttggtgctttcagctgctgcaatttcttgttcatctttagccggcgctggtcttg 1580

                                                                        
Query: 512  aacttgttgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaat 571
             ||    ||||||||||||||||  || || ||||||||||||||||| || || |||||
Sbjct: 1579 gacaacctgcttagcacgagccctaatttgttcgggatcaattttggactgcgggcgaat 1520

                                                                        
Query: 572  gacaaagtccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgccc 631
             ||||||||||  |||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct: 1519 aacaaagtccaagggtgatgcttctggcctagaagcatgctgccttgcaccaccttgccc 1460

                                                    
Query: 632  ggacttgcgctgaggagaagtcagcatcaagatcatcgtc 671
             |||||||||||| ||||||||||||||||||||||||||
Sbjct: 1459 agacttgcgctga-gagaagtcagcatcaagatcatcgtc 1421
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>gb|AY104326.1| Zea mays PCO064465 mRNA sequence
          Length = 879

 Score =  281 bits (142), Expect = 1e-72
 Identities = 262/298 (87%), Gaps = 3/298 (1%)
 Strand = Plus / Minus

                                                                       
Query: 393 tacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggtttttc 452
           |||| |||||||| ||| ||||||||||| || || ||||| || |||||||||||||||
Sbjct: 562 tacaggtacttgatcatgccacggccttccacgctgagcttcgacgcctgaaggtttttc 503

                                                                       
Query: 453 ttctttggcgctttcagctgctgcagtttcttgttcatcttcagccgacgctggtcttga 512
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 502 ttcttgggcgctttcagctgctgcaatttcttgttcatcttcagccgacgctggtcttgg 443

                                                                       
Query: 513 acttgttgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaatg 572
           ||    ||||||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct: 442 acagcctgcttagcacgagcccgtatctgctcagggtcaattttggactgtggacgaatg 383

                                                                       
Query: 573 acaaagtccagaggtgatgcttctggcctagaagcatgctg-cctagaaccactttgccc 631
           |||||||||| ||| || ||||| ||||||||||| ||||| ||| |||| |||||||||
Sbjct: 382 acaaagtccaaaggcgaggcttccggcctagaagcgtgctgcccttgaactactttgccc 323

                                                                     
Query: 632 ggacttgcgctgaggagaagtcagcatcaagatcatcgtcttcggggttccattccag 689
            |||||||| ||  || |||||||||||||||||||| || || || |||||||||||
Sbjct: 322 agacttgcgttg-tgaaaagtcagcatcaagatcatcatc-tctggattccattccag 267
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  133 bits (67), Expect = 8e-28
 Identities = 109/123 (88%)
 Strand = Plus / Minus

                                                                           
Query: 519     tgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaatgacaaag 578
               ||||||||||||||||  || || ||||||||||||||||| || || ||||| ||||||
Sbjct: 2563649 tgcttagcacgagccctaatttgttcgggatcaattttggactgcgggcgaataacaaag 2563590

                                                                           
Query: 579     tccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgcccggacttg 638
               ||||  |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||
Sbjct: 2563589 tccaagggtgatgcttctggcctagaagcatgctgccttgcaccaccttgcccagacttg 2563530

                  
Query: 639     cgc 641
               |||
Sbjct: 2563529 cgc 2563527



 Score =  129 bits (65), Expect = 1e-26
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                           
Query: 392     ttacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggttttt 451
               |||||||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 2563886 ttacaagtacttgatcattccacgcccttcaacactgagttttgacgcctgaaggttttt 2563827

                                                        
Query: 452     cttctttggcgctttcagctgctgcagtttcttgttcatct 492
               ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 2563826 cttctttggtgctttcagctgctgcaatttcttgttcatct 2563786



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 646     gagaagtcagcatcaagatcatcgtc 671
               ||||||||||||||||||||||||||
Sbjct: 2563436 gagaagtcagcatcaagatcatcgtc 2563411
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416D03
          Length = 157112

 Score =  133 bits (67), Expect = 8e-28
 Identities = 109/123 (88%)
 Strand = Plus / Minus

                                                                          
Query: 519    tgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaatgacaaag 578
              ||||||||||||||||  || || ||||||||||||||||| || || ||||| ||||||
Sbjct: 118070 tgcttagcacgagccctaatttgttcgggatcaattttggactgcgggcgaataacaaag 118011

                                                                          
Query: 579    tccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgcccggacttg 638
              ||||  |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||
Sbjct: 118010 tccaagggtgatgcttctggcctagaagcatgctgccttgcaccaccttgcccagacttg 117951

                 
Query: 639    cgc 641
              |||
Sbjct: 117950 cgc 117948



 Score =  129 bits (65), Expect = 1e-26
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                          
Query: 392    ttacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggttttt 451
              |||||||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 118307 ttacaagtacttgatcattccacgcccttcaacactgagttttgacgcctgaaggttttt 118248

                                                       
Query: 452    cttctttggcgctttcagctgctgcagtttcttgttcatct 492
              ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 118247 cttctttggtgctttcagctgctgcaatttcttgttcatct 118207



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 646    gagaagtcagcatcaagatcatcgtc 671
              ||||||||||||||||||||||||||
Sbjct: 117857 gagaagtcagcatcaagatcatcgtc 117832
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>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434B04
          Length = 167029

 Score =  133 bits (67), Expect = 8e-28
 Identities = 109/123 (88%)
 Strand = Plus / Minus

                                                                         
Query: 519   tgcttagcacgagcccgtatctggtcgggatcaattttggaatgtggacgaatgacaaag 578
             ||||||||||||||||  || || ||||||||||||||||| || || ||||| ||||||
Sbjct: 13424 tgcttagcacgagccctaatttgttcgggatcaattttggactgcgggcgaataacaaag 13365

                                                                         
Query: 579   tccagaggtgatgcttctggcctagaagcatgctgcctagaaccactttgcccggacttg 638
             ||||  |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||
Sbjct: 13364 tccaagggtgatgcttctggcctagaagcatgctgccttgcaccaccttgcccagacttg 13305

                
Query: 639   cgc 641
             |||
Sbjct: 13304 cgc 13302



 Score =  129 bits (65), Expect = 1e-26
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                         
Query: 392   ttacaagtacttgaccatcccacggccttcgacactaagctttgaagcctgaaggttttt 451
             |||||||||||||| ||| ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct: 13661 ttacaagtacttgatcattccacgcccttcaacactgagttttgacgcctgaaggttttt 13602

                                                      
Query: 452   cttctttggcgctttcagctgctgcagtttcttgttcatct 492
             ||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 13601 cttctttggtgctttcagctgctgcaatttcttgttcatct 13561



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 646   gagaagtcagcatcaagatcatcgtc 671
             ||||||||||||||||||||||||||
Sbjct: 13211 gagaagtcagcatcaagatcatcgtc 13186
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>ref|NM_102946.3| Arabidopsis thaliana unknown protein AT1G32130 mRNA, complete cds
          Length = 1853

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 450  ttcttctttggcgctttcagctgctgcagtttcttgttcatcttcagccgacgctggtc 508
            ||||||||||   |||| |||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 1530 ttcttctttgttccttttagctgctgaagtttcttgttcatcttgacccgacgctggtc 1472
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>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 450   ttcttctttggcgctttcagctgctgcagtttcttgttcatct 492
             ||||||||||   |||| |||||||| ||||||||||||||||
Sbjct: 66955 ttcttctttgttccttttagctgctgaagtttcttgttcatct 66913
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>ref|XM_483143.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2616

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 299  tggccatggtggaagagtgctt 320
            ||||||||||||||||||||||
Sbjct: 1304 tggccatggtggaagagtgctt 1325
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>ref|XM_483144.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2500

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 299  tggccatggtggaagagtgctt 320
            ||||||||||||||||||||||
Sbjct: 1311 tggccatggtggaagagtgctt 1332
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>gb|AE006465.1| Homo sapiens 16p13.3 sequence section 4 of 8
          Length = 278911

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 290    gccctccgatggccatggtgga 311
              ||||||||||||||||||||||
Sbjct: 246813 gccctccgatggccatggtgga 246792
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>gb|AC009041.10| Homo sapiens chromosome 16 clone RP11-161M6, complete sequence
          Length = 162342

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 290    gccctccgatggccatggtgga 311
              ||||||||||||||||||||||
Sbjct: 101782 gccctccgatggccatggtgga 101761
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 299      tggccatggtggaagagtgctt 320
                ||||||||||||||||||||||
Sbjct: 24470438 tggccatggtggaagagtgctt 24470459
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>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1142B04
          Length = 161964

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 299   tggccatggtggaagagtgctt 320
             ||||||||||||||||||||||
Sbjct: 86154 tggccatggtggaagagtgctt 86175
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>dbj|AK067229.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096C15, full
            insert sequence
          Length = 2616

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 299  tggccatggtggaagagtgctt 320
            ||||||||||||||||||||||
Sbjct: 1304 tggccatggtggaagagtgctt 1325
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>dbj|AK067381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102C10, full
            insert sequence
          Length = 2499

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 299  tggccatggtggaagagtgctt 320
            ||||||||||||||||||||||
Sbjct: 1310 tggccatggtggaagagtgctt 1331
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>gb|AF251068.2| Oryza sativa (japonica cultivar-group) alkaline alpha-galactosidase
            mRNA, complete cds
          Length = 2694

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 299  tggccatggtggaagagtgctt 320
            ||||||||||||||||||||||
Sbjct: 1385 tggccatggtggaagagtgctt 1406
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>emb|AL024496.7|HS422E10 Human DNA sequence from clone LA16-422E10 on chromosome 16 Contains an
             EST and five putative CpG islands, complete sequence
          Length = 27210

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 290   gccctccgatggccatggtgga 311
             ||||||||||||||||||||||
Sbjct: 22294 gccctccgatggccatggtgga 22273
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>gb|AC163617.5| Mus musculus BAC clone RP23-115O21 from chromosome 8, complete sequence
          Length = 224322

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 429   agctttgaagcctgaaggttt 449
             |||||||||||||||||||||
Sbjct: 52557 agctttgaagcctgaaggttt 52537
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 525     gcacgagcccgtatctggtcg 545
               |||||||||||||||||||||
Sbjct: 1717205 gcacgagcccgtatctggtcg 1717185
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>gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, complete sequence
          Length = 157607

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    aacatgacaaacatttgtaca 134
              |||||||||||||||||||||
Sbjct: 113230 aacatgacaaacatttgtaca 113250
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>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    tcaaacttaaaacttacagcccaat 98
             ||||||||||||||| |||||||||
Sbjct: 91562 tcaaacttaaaactttcagcccaat 91586
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>gb|AC175781.3| Cavia porcellus clone CH234-402D11, complete sequence
          Length = 183894

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 245    gctaatctacattagccaaga 265
              |||||||||||||||||||||
Sbjct: 165919 gctaatctacattagccaaga 165899
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>gb|AC155810.5| Mus musculus BAC clone RP24-181I18 from chromosome 8, complete sequence
          Length = 168291

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 429   agctttgaagcctgaaggttt 449
             |||||||||||||||||||||
Sbjct: 30692 agctttgaagcctgaaggttt 30712
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>emb|BX088524.16| Zebrafish DNA sequence from clone CH211-215A9 in linkage group 10,
              complete sequence
          Length = 228624

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 113    aaacatgacaaacatttgtacagtaaaag 141
              |||||||||||||||||| ||| ||||||
Sbjct: 104351 aaacatgacaaacatttgcacattaaaag 104323
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 74       tcaaacttaaaacttacagcccaat 98
                ||||||||||||||| |||||||||
Sbjct: 19496155 tcaaacttaaaactttcagcccaat 19496179
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>emb|AL591769.3|CNS07EGM Human chromosome 14 DNA sequence BAC R-600G2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172856

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 500    acgctggtcttgaacttgttg 520
              |||||||||||||||||||||
Sbjct: 166633 acgctggtcttgaacttgttg 166653
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>emb|CR627488.8| Zebrafish DNA sequence from clone CH211-242B23 in linkage group 10,
              complete sequence
          Length = 137433

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 113    aaacatgacaaacatttgtacagtaaaag 141
              |||||||||||||||||| ||| ||||||
Sbjct: 132560 aaacatgacaaacatttgcacattaaaag 132532
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>emb|AL591771.1|CNS07EGO Human chromosome 14 DNA sequence BAC R-727C22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 154205

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 500   acgctggtcttgaacttgttg 520
             |||||||||||||||||||||
Sbjct: 36019 acgctggtcttgaacttgttg 36039
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>ref|XM_457530.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B13541g)
           partial mRNA
          Length = 1077

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 464 tttcagctgctgcagtttcttgtt 487
           |||||||||||||||||| |||||
Sbjct: 616 tttcagctgctgcagtttgttgtt 593
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>ref|XM_706922.1| Candida albicans SC5314 hypothetical protein (CaO19.8264), mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  gcagtttcttgttcatcttc 494
            ||||||||||||||||||||
Sbjct: 2900 gcagtttcttgttcatcttc 2881
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>ref|XM_706901.1| Candida albicans SC5314 hypothetical protein (CaO19.649), mRNA
          Length = 2913

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  gcagtttcttgttcatcttc 494
            ||||||||||||||||||||
Sbjct: 2900 gcagtttcttgttcatcttc 2881
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>gb|AC112671.25| Mus musculus chromosome 13, clone RP24-299O19, complete sequence
          Length = 139581

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   aatctacattagccaagaaa 267
             ||||||||||||||||||||
Sbjct: 27228 aatctacattagccaagaaa 27247
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>gb|AC124362.3| Mus musculus BAC clone RP24-528N1 from chromosome 13, complete sequence
          Length = 173382

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    aatctacattagccaagaaa 267
              ||||||||||||||||||||
Sbjct: 112271 aatctacattagccaagaaa 112290
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>gb|AC073236.8| Homo sapiens BAC clone RP11-774B15 from 7, complete sequence
          Length = 171012

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    caaacatgacaaacatttgt 131
              ||||||||||||||||||||
Sbjct: 160372 caaacatgacaaacatttgt 160353
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
               hansenii
          Length = 1349926

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 464     tttcagctgctgcagtttcttgtt 487
               |||||||||||||||||| |||||
Sbjct: 1054027 tttcagctgctgcagtttgttgtt 1054050
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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL
             Y-1140 of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   caaacatgacaaacatttgt 131
             ||||||||||||||||||||
Sbjct: 10607 caaacatgacaaacatttgt 10588
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 656     catcaagatcatcgtcttcg 675
               ||||||||||||||||||||
Sbjct: 1260350 catcaagatcatcgtcttcg 1260331
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>gb|AC022239.16| Homo sapiens chromosome 8, clone RP11-148O21, complete sequence
          Length = 191630

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    ccaagaaattccatttccac 279
              ||||||||||||||||||||
Sbjct: 117962 ccaagaaattccatttccac 117943
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>gb|AC122110.4| Mus Musculus Strain C57BL6/J Chromosome 2 BAC, RP23-319K8, Complete
             Sequence, complete sequence
          Length = 179550

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gtcaaacttaaaacttacag 92
             ||||||||||||||||||||
Sbjct: 30963 gtcaaacttaaaacttacag 30944
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>gb|AY275833.1| Homo sapiens polymerase (DNA directed), alpha (POLA) gene, complete cds
          Length = 304837

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    gccgacgctggtcttgaact 515
              ||||||||||||||||||||
Sbjct: 191488 gccgacgctggtcttgaact 191507
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>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete sequence
          Length = 215330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     gtcaaacttaaaacttacag 92
              ||||||||||||||||||||
Sbjct: 210140 gtcaaacttaaaacttacag 210121
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>gb|AC093798.3| Homo sapiens BAC clone RP11-306N14 from 2, complete sequence
          Length = 233877

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   ttgtacagtaaaaggcacca 147
             ||||||||||||||||||||
Sbjct: 91014 ttgtacagtaaaaggcacca 91033
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>emb|AL136120.8| Human DNA sequence from clone RP5-975D15 on chromosome 1p31.3-32.2
             Contains the GADD45A gene for growth arrest and
             DNA-damage-inducible alpha, the 3' end of the GNG12 gene
             for guanine nucleotide binding protein (G protein) gamma
             12 and a CpG island, complete sequence
          Length = 104198

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   tgacaaagtccagaggtgat 590
             ||||||||||||||||||||
Sbjct: 94477 tgacaaagtccagaggtgat 94458
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>gb|AC153562.2| Mus musculus 10 BAC RP23-143D12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 212486

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    gctggtcttgaacttgttgc 521
              ||||||||||||||||||||
Sbjct: 210656 gctggtcttgaacttgttgc 210675
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>emb|CT485675.4| RP43-034D18, complete sequence
          Length = 163081

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   gccgacgctggtcttgaact 515
             ||||||||||||||||||||
Sbjct: 17261 gccgacgctggtcttgaact 17242
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>gb|AC153560.5| Mus musculus 10 BAC RP23-376E10 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183485

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 502   gctggtcttgaacttgttgc 521
             ||||||||||||||||||||
Sbjct: 85795 gctggtcttgaacttgttgc 85776
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>emb|AL929138.15| Mouse DNA sequence from clone RP23-395O2 on chromosome 2, complete
             sequence
          Length = 100984

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 503   ctggtcttgaacttgttgcttagc 526
             ||||||||||||||||||| ||||
Sbjct: 55338 ctggtcttgaacttgttgcatagc 55361
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>emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, complete sequence
          Length = 244471

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    catacaagtagagatgtatgaaaa 68
             ||||||||||||| ||||||||||
Sbjct: 50221 catacaagtagagttgtatgaaaa 50244
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>emb|Z68003.1|CEE02H4 Caenorhabditis elegans Cosmid E02H4, complete sequence
          Length = 35409

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   tcaaacatgacaaacatttgtaca 134
             ||||| ||||||||||||||||||
Sbjct: 23663 tcaaagatgacaaacatttgtaca 23686
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>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete
              sequence
          Length = 170475

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 492    ttcagccgacgctggtcttgaact 515
              ||||||||| ||||||||||||||
Sbjct: 153945 ttcagccgaggctggtcttgaact 153922
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>emb|AL928560.6| Mouse DNA sequence from clone RP23-353N23 on chromosome 2, complete
              sequence
          Length = 209502

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    cccaaatcaccaagttttcg 218
              ||||||||||||||||||||
Sbjct: 128460 cccaaatcaccaagttttcg 128479
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>gb|AC079375.24| Homo sapiens X BAC RP11-757E1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172649

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 496   gccgacgctggtcttgaact 515
             ||||||||||||||||||||
Sbjct: 17465 gccgacgctggtcttgaact 17446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,380,714
Number of Sequences: 3902068
Number of extensions: 6380714
Number of successful extensions: 315573
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 315153
Number of HSP's gapped (non-prelim): 412
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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