ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14k02 |
|---|---|
| Clone Library Name | barley_pub |
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 41.2 bits (95), Expect = 0.005 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = -2 Query: 757 DPPRKXQ-CVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQ-HHKVPA 584 DP R+ Q C Q C + + R + ++ + D Q + C +CQ + P Sbjct: 79 DPQRRYQDCRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKE-CQQRCQWQEQRPE 137 Query: 583 RKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 476 RK+QCV EC + P + E K WR+ +E Sbjct: 138 RKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170 Score = 31.2 bits (69), Expect = 4.7 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 12/112 (10%) Frame = -2 Query: 757 DPPRKXQCVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSN-----DSCDHKCQHHK 593 DP ++ + ++ +L + +T S KE + D + C CQ + Sbjct: 36 DPQQRYEDCRKRCQLETRGQTEQDKCEDRSETQLKEEQQRDGEDPQRRYQDCRQHCQQEE 95 Query: 592 VPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQTC 458 R ++ C ++ +++ P + C+++C W++ P RK++CV+ C Sbjct: 96 RRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKEC 146
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 35.8 bits (81), Expect = 0.19 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%) Frame = -2 Query: 757 DPPRKXQ-CVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQHH----- 596 DP R+ + C Q+C + + R K E + Q + +CQ H Sbjct: 82 DPQRRYEECQQECRQQEERQRP------QCQQRCLKRFEQEQQQSQRQFQECQQHCHQQE 135 Query: 595 KVPARKKQCVDECHRREHHHPSRAACERK 509 + P RK+QCV EC R +P R E + Sbjct: 136 QRPERKQQCVRECRERYQENPWRREREEE 164
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +1 Query: 472 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 651 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 652 PSAWGRSMTSSPPP 693 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +1 Query: 472 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 651 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 652 PSAWGRSMTSSPPP 693 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 33.9 bits (76), Expect = 0.73 Identities = 23/61 (37%), Positives = 28/61 (45%) Frame = +1 Query: 478 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 657 PSL S G+TSS KPP P P T +S L +V + G PPPP+ Sbjct: 924 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGG---------PPPPT 974 Query: 658 A 660 A Sbjct: 975 A 975
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 33.5 bits (75), Expect = 0.95 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +1 Query: 478 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 657 PSL S G+TSS KPP P P T +S L V + G PPPP+ Sbjct: 923 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGG---------PPPPT 973 Query: 658 A 660 A Sbjct: 974 A 974
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 33.1 bits (74), Expect = 1.2 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = -2 Query: 676 SSSAPTPKEVEVDDQSNDS--------CDHKC--QHHKVPARKKQCVDECHRREHHHP 533 S+ +PTP V D+ N S DH +HH P+ +Q H ++HHHP Sbjct: 252 SALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQ--QHPHHQQHHHP 307
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 33.1 bits (74), Expect = 1.2 Identities = 22/111 (19%), Positives = 42/111 (37%) Frame = -2 Query: 784 CXRKCSH*RDPPRKXQCVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKC 605 C + ++ K QC + R + AA K E ++ C+ + Sbjct: 1064 CEERAKKLKEAAEKKQCEE-----RAKKEKEAAEKKQCEERAKKLKEAAEKKQ--CEERA 1116 Query: 604 QHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 452 + K A KK+C +E +RE + C ++ T K++C + + Sbjct: 1117 KKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166 Score = 32.7 bits (73), Expect = 1.6 Identities = 24/109 (22%), Positives = 44/109 (40%) Frame = -2 Query: 778 RKCSH*RDPPRKXQCVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSNDSCDHKCQH 599 +KC + +K ++C + + R AA KE E ++ C+ ++ Sbjct: 381 KKCEEAANKEKKAAEKKKCEKAAKE-RKEAAEKKKCEEAAKKEKEAAERKK--CEELAKN 437 Query: 598 HKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 452 K A KK+C E ++E R CE + K++C +T + Sbjct: 438 IKKAAEKKKC-KEAAKKEKEAAERKKCEELAKKIKKAAEKKKCEETAKK 485
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +2 Query: 98 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 274 S CG+H T+ ++ KG +H A F +C CK + FA++ K R + Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = -2 Query: 667 APTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKC-SHWRD 491 +PT K++ ++D + + C P++K+ V H R+H PS + + SH D Sbjct: 112 SPTNKKISINDSTRQDKGNSCTTTSSPSQKRSNVLLPHVRKHSSPSLLSFSKNSGSHMGD 171 Query: 490 PTR 482 P + Sbjct: 172 PNQ 174
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 32.7 bits (73), Expect = 1.6 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 523 PPCSGDDAPVCGTRPRT-ASSSPELYDVGTCGRTSRCSDHRPPPP--SAWGRSMTSSPPP 693 PP S D+ P R + SS+P L G G RPPPP GRS PPP Sbjct: 314 PPASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPP 373
>ACH91_ONCMY (Q8JFN7) Neuronal acetylcholine receptor protein, alpha-9-I subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9-I) (NACHR alpha 9-I) Length = 572 Score = 32.3 bits (72), Expect = 2.1 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -2 Query: 679 MSSSAPTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSH 500 ++ P PKE ++ S +C C HHK Q + C R + RA C K + Sbjct: 487 LNEPLPYPKEKHLNPASAPACSCPCPHHKQVVYNIQYIANCFREQ-----RATC-AKGAE 540 Query: 499 WR 494 W+ Sbjct: 541 WK 542
>YL37_CAEEL (P34428) Hypothetical protein F44B9.7| Length = 466 Score = 32.0 bits (71), Expect = 2.8 Identities = 21/78 (26%), Positives = 36/78 (46%) Frame = -2 Query: 805 HHPSRASCXRKCSH*RDPPRKXQCVQQCMRLRXQPRTWAAVTMSSSAPTPKEVEVDDQSN 626 HHP+ + + S PP Q +L QP T++ T +APT D N Sbjct: 125 HHPTTSLLAQHLSSAPLPPAPPQQQSHLSQLLQQPTTYSTATNPHAAPTQTIARRPD--N 182 Query: 625 DSCDHKCQHHKVPARKKQ 572 ++ + + Q ++ AR++Q Sbjct: 183 EARNAQLQEQELAARQQQ 200
>TXND3_ANTCR (P90666) Thioredoxin domain-containing protein 3 homolog| (Intermediate chain 1) Length = 837 Score = 31.6 bits (70), Expect = 3.6 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Frame = -1 Query: 761 KRPAKKGXVRAAVHAATASTSNVGGGDDVIERPHAEGGGGR*SE--QRLVRPQVPTS*SS 588 ++PA + + A A+ + GG+ E+P AEGG E Q+ + P + + Sbjct: 672 EQPAAESGEQQAEGGEPATETATEGGEQQAEQPPAEGGEKPAEEETQQTQEGETPAADEA 731 Query: 587 GEEEAVRGRVPQTGASSPEQGGLREEV*PLE 495 E+ G P + EQ EE P E Sbjct: 732 QAEQTQEGETPAADEAQAEQTQEGEEQKPAE 762
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 30.4 bits (67), Expect = 8.0 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +1 Query: 523 PPCSGDDAPVCGTRPRTASS-SPELYDVGTCGRTSRCSDHRPPPP--SAWGRSMTSSPPP 693 PP S D+ P R + +S +P L G G RPPPP GRS PPP Sbjct: 308 PPTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPPPVRDPPGRSGPLPPPP 367
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.4 bits (67), Expect = 8.0 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +3 Query: 141 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 296 +E E SS+ LS+ RGI +S S+++ PLP + + IYRS + + Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169
>JAG2_HUMAN (Q9Y219) Jagged-2 precursor (Jagged2) (HJ2)| Length = 1238 Score = 30.4 bits (67), Expect = 8.0 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Frame = +1 Query: 553 CGTRPRTASSSPELYDVGTCGRTSRCSDHRP-----PPPSAWGRSMTSSPPPT 696 CG +P + PE C RC + P PP AWG PP T Sbjct: 906 CGWKPCLLAGQPEALSA-QCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPST 957
>MST1_DROHY (Q08695) Axoneme-associated protein mst101(1)| Length = 344 Score = 30.4 bits (67), Expect = 8.0 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 2/116 (1%) Frame = -2 Query: 793 RASCXRKCSH*RDPPRKXQCVQQCMRLR--XQPRTWAAVTMSSSAPTPKEVEVDDQSNDS 620 + C ++ K +C + + + + + A + E + Sbjct: 138 KKKCAEAAKKEKEAAEKKKCAEAAKKEKEAAEKKKCAEAAQKKKCAELAKKEQEAAEKKK 197 Query: 619 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 452 C + K A KK+C +E ++E + CE + ++ K++C + + Sbjct: 198 CAEAAKKEKEAAEKKKC-EERAKKEKEAAEKKKCEERAKKEKEAAEKKKCAEAAKK 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,072,011 Number of Sequences: 219361 Number of extensions: 2013336 Number of successful extensions: 6661 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6587 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 10345377000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
