Clone Name | rbasd14j22 |
---|---|
Clone Library Name | barley_pub |
>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)| (DNA methyltransferase homolog MmuIIP) (DNA MTase homolog MmuIIP) (M.MmuIIP) (Met-2) Length = 415 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/69 (43%), Positives = 43/69 (62%) Frame = -2 Query: 570 EIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391 +I L+ L R+FTP+ +ANL FP F FP+ ++Q+Y +LGNS +V VVA LL L Sbjct: 331 KIAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVLC 390 Query: 390 AGAXXSXQS 364 G + +S Sbjct: 391 EGFGNASES 399
>DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)| (DNA methyltransferase homolog HsaIIP) (DNA MTase homolog HsaIIP) (M.HsaIIP) (PuMet) Length = 391 Score = 59.3 bits (142), Expect = 8e-09 Identities = 28/60 (46%), Positives = 41/60 (68%) Frame = -2 Query: 570 EIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391 +I L L R+FTP+ +ANL FP F FP+ I ++Q+Y +LGNS +V VVA L++ L+ Sbjct: 331 QITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 390
>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)| (Cytosine-specific methyltransferase HgiCI) (M.HgiCI) Length = 420 Score = 36.6 bits (83), Expect = 0.058 Identities = 23/53 (43%), Positives = 26/53 (49%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFAGA 382 R TPR A L FP SF+F L Y GNS SV VV ++ LF A Sbjct: 364 RRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVSVPVVKAVILDLFKSA 414
>PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.SpoI) (M.SpomI)| Length = 330 Score = 35.8 bits (81), Expect = 0.099 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = -2 Query: 549 LGXRFFTPRXVANLHSFPSSFRF-PDHIGLRQQYAMLGNSXSVAVVAPLLRYL 394 L R+FT R VA L FP S + ++ + Y +LGNS +V VV+ L+ L Sbjct: 272 LQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISLL 324
>MTS2_SHISO (P34879) Modification methylase SsoII (EC 2.1.1.37)| (Cytosine-specific methyltransferase SsoII) (M.SsoII) Length = 379 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415 R TPR + L FPS F P + Q Y GNS +V V+ Sbjct: 327 RKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVI 366
>MTBA_BACAR (P19888) Modification methylase BanI (EC 2.1.1.37)| (Cytosine-specific methyltransferase BanI) (M.BanI) Length = 428 Score = 32.0 bits (71), Expect = 1.4 Identities = 20/50 (40%), Positives = 23/50 (46%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391 R TPR A L FP F H Y LGNS +V VV ++ LF Sbjct: 364 RRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVTVKVVEKVIEDLF 411
>MTNX_NEILA (P24581) Cytosine-specific methyltransferase NlaX (EC 2.1.1.37)| (M.NlaX) Length = 313 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFA 388 R TP A L FP SF+ P + Q Y GNS V V+ + + A Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303
>MTH2_HAEPA (P15446) Modification methylase HpaII (EC 2.1.1.37)| (Cytosine-specific methyltransferase HpaII) (M.HpaII) Length = 358 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = -2 Query: 585 PKXNLEIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415 P N++ +N G R TPR A L FP S+ P + Y GNS +V + Sbjct: 289 PTTNIK-GEVNREGIRKMTPREWARLQGFPDSYVIP--VSDASAYKQFGNSVAVPAI 342
>MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37)| (Cytosine-specific methyltransferase DsaV) (M.DsaV) Length = 351 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFA 388 R TPR A L FP SF P + Q + GNS V+V+ + + + + Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307
>SYV_BARHE (Q6G2V3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 907 Score = 30.8 bits (68), Expect = 3.2 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = -1 Query: 364 IWQVIFTLFTELEDLRSICRWPSRNYSEXVDACKVRWYV 248 +W + TL + ED+ ++ +WP ++S+ A + W + Sbjct: 723 LWSLTETLGMKREDMLALIQWPEASFSDEEAASDINWLI 761
>Y048_UREPA (Q9PR97) Hypothetical protein UU048| Length = 496 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Frame = -1 Query: 256 WYV---WTKLSLWIYSV--YKYQSNVVPFTHNHIFEVQLVM*YFFRASVI*YFVMTYRIA 92 W++ ++ + +W+ V YK+++ +P +NH+ V ++ +F +I Y V T Sbjct: 286 WFILLLFSAIFIWLLRVFAYKHENENLPVGNNHLLWVYILQSFFAIIILILYMVFTL--- 342 Query: 91 RKKWMQIKS 65 KK + +KS Sbjct: 343 -KKRLSVKS 350
>MTSA_LACLC (P34877) Modification methylase ScrFIA (EC 2.1.1.37)| (Cytosine-specific methyltransferase ScrFIA) (M.ScrFIA) (M.ScrFI-A) Length = 389 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -2 Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415 R TPR A L FP +F P + Q Y GNS +V + Sbjct: 334 RKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVAVPTI 373 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,301,206 Number of Sequences: 219361 Number of extensions: 1612183 Number of successful extensions: 3008 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3006 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)