ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like pro... 61 3e-09
2DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like pro... 59 8e-09
3MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37) (... 37 0.058
4PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.Spo... 36 0.099
5MTS2_SHISO (P34879) Modification methylase SsoII (EC 2.1.1.37) (... 32 1.4
6MTBA_BACAR (P19888) Modification methylase BanI (EC 2.1.1.37) (C... 32 1.4
7MTNX_NEILA (P24581) Cytosine-specific methyltransferase NlaX (EC... 32 1.9
8MTH2_HAEPA (P15446) Modification methylase HpaII (EC 2.1.1.37) (... 32 1.9
9MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37) (C... 31 2.4
10SYV_BARHE (Q6G2V3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 31 3.2
11Y048_UREPA (Q9PR97) Hypothetical protein UU048 30 5.4
12MTSA_LACLC (P34877) Modification methylase ScrFIA (EC 2.1.1.37) ... 30 7.1

>DNMT2_MOUSE (O55055) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog MmuIIP) (DNA MTase
           homolog MmuIIP) (M.MmuIIP) (Met-2)
          Length = 415

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 30/69 (43%), Positives = 43/69 (62%)
 Frame = -2

Query: 570 EIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391
           +I  L+ L  R+FTP+ +ANL  FP  F FP+   ++Q+Y +LGNS +V VVA LL  L 
Sbjct: 331 KIAKLSMLKLRYFTPKEIANLQGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVAKLLTVLC 390

Query: 390 AGAXXSXQS 364
            G   + +S
Sbjct: 391 EGFGNASES 399



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>DNMT2_HUMAN (O14717) DNA (cytosine-5)-methyltransferase-like protein 2 (Dnmt2)|
           (DNA methyltransferase homolog HsaIIP) (DNA MTase
           homolog HsaIIP) (M.HsaIIP) (PuMet)
          Length = 391

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 28/60 (46%), Positives = 41/60 (68%)
 Frame = -2

Query: 570 EIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391
           +I  L  L  R+FTP+ +ANL  FP  F FP+ I ++Q+Y +LGNS +V VVA L++ L+
Sbjct: 331 QITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY 390



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>MTC1_HERAU (P25263) Modification methylase HgiCI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HgiCI) (M.HgiCI)
          Length = 420

 Score = 36.6 bits (83), Expect = 0.058
 Identities = 23/53 (43%), Positives = 26/53 (49%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFAGA 382
           R  TPR  A L  FP SF+F     L   Y   GNS SV VV  ++  LF  A
Sbjct: 364 RRITPRECARLQGFPDSFQFHPKDSL--AYRQFGNSVSVPVVKAVILDLFKSA 414



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>PMT1_SCHPO (P40999) DNA methyltransferase homolog pmt1 (SpIM.SpoI) (M.SpomI)|
          Length = 330

 Score = 35.8 bits (81), Expect = 0.099
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 549 LGXRFFTPRXVANLHSFPSSFRF-PDHIGLRQQYAMLGNSXSVAVVAPLLRYL 394
           L  R+FT R VA L  FP S  +   ++  +  Y +LGNS +V VV+ L+  L
Sbjct: 272 LQLRYFTAREVARLMGFPESLEWSKSNVTEKCMYRLLGNSINVKVVSYLISLL 324



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>MTS2_SHISO (P34879) Modification methylase SsoII (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase SsoII) (M.SsoII)
          Length = 379

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415
           R  TPR  + L  FPS F  P  +   Q Y   GNS +V V+
Sbjct: 327 RKITPREASRLQGFPSDFIIP--VSDTQAYKQFGNSVAVPVI 366



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>MTBA_BACAR (P19888) Modification methylase BanI (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase BanI) (M.BanI)
          Length = 428

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLF 391
           R  TPR  A L  FP  F    H      Y  LGNS +V VV  ++  LF
Sbjct: 364 RRITPRECARLQGFPDDFIL--HSNDNFAYKQLGNSVTVKVVEKVIEDLF 411



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>MTNX_NEILA (P24581) Cytosine-specific methyltransferase NlaX (EC 2.1.1.37)|
           (M.NlaX)
          Length = 313

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFA 388
           R  TP   A L  FP SF+ P  +   Q Y   GNS  V V+  +   + A
Sbjct: 255 RKITPPEAARLQGFPDSFQIP--VSDAQAYRQFGNSVCVPVIRAIAEQMKA 303



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>MTH2_HAEPA (P15446) Modification methylase HpaII (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase HpaII) (M.HpaII)
          Length = 358

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -2

Query: 585 PKXNLEIXSLNELGXRFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415
           P  N++   +N  G R  TPR  A L  FP S+  P  +     Y   GNS +V  +
Sbjct: 289 PTTNIK-GEVNREGIRKMTPREWARLQGFPDSYVIP--VSDASAYKQFGNSVAVPAI 342



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>MTD5_DACSA (P50185) Modification methylase DsaV (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase DsaV) (M.DsaV)
          Length = 351

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVVAPLLRYLFA 388
           R  TPR  A L  FP SF  P  +   Q +   GNS  V+V+  + + + +
Sbjct: 259 RVLTPRECARLQGFPESFVIP--VSDCQAWRQFGNSVPVSVIRAIAQKMLS 307



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>SYV_BARHE (Q6G2V3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 907

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -1

Query: 364 IWQVIFTLFTELEDLRSICRWPSRNYSEXVDACKVRWYV 248
           +W +  TL  + ED+ ++ +WP  ++S+   A  + W +
Sbjct: 723 LWSLTETLGMKREDMLALIQWPEASFSDEEAASDINWLI 761



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>Y048_UREPA (Q9PR97) Hypothetical protein UU048|
          Length = 496

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -1

Query: 256 WYV---WTKLSLWIYSV--YKYQSNVVPFTHNHIFEVQLVM*YFFRASVI*YFVMTYRIA 92
           W++   ++ + +W+  V  YK+++  +P  +NH+  V ++  +F    +I Y V T    
Sbjct: 286 WFILLLFSAIFIWLLRVFAYKHENENLPVGNNHLLWVYILQSFFAIIILILYMVFTL--- 342

Query: 91  RKKWMQIKS 65
            KK + +KS
Sbjct: 343 -KKRLSVKS 350



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>MTSA_LACLC (P34877) Modification methylase ScrFIA (EC 2.1.1.37)|
           (Cytosine-specific methyltransferase ScrFIA) (M.ScrFIA)
           (M.ScrFI-A)
          Length = 389

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 540 RFFTPRXVANLHSFPSSFRFPDHIGLRQQYAMLGNSXSVAVV 415
           R  TPR  A L  FP +F  P  +   Q Y   GNS +V  +
Sbjct: 334 RKITPREAARLQGFPENFIIP--VSDTQAYKEFGNSVAVPTI 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,301,206
Number of Sequences: 219361
Number of extensions: 1612183
Number of successful extensions: 3008
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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