>gb|BT009601.1| Triticum aestivum clone wre1n.pk0079.c6:fis, full insert mRNA
            sequence
          Length = 1462

 Score =  307 bits (155), Expect = 2e-80
 Identities = 237/267 (88%)
 Strand = Plus / Minus

                                                                        
Query: 341  caaggtgaatatcacctgccaaatgattganaacttntntatgccccggcaaacagatag 400
            |||||||||||||||||||||||||||||| ||||| | |||| | ||||||||||||||
Sbjct: 1302 caaggtgaatatcacctgccaaatgattgagaacttgtctatgtctcggcaaacagatag 1243

                                                                        
Query: 401  cgcagcaaaggagccacaaccgctacactaanactattacccagcatggcatactgctgt 460
            | || ||||||||||||||||||||  || | |||||||||||||||||||||||| |||
Sbjct: 1242 cacaacaaaggagccacaaccgctatgctcagactattacccagcatggcatactgttgt 1183

                                                                        
Query: 461  ctgaggcctatgtgatccggaaaacggaaactcgagggaaaagaatgcaaattggcgacc 520
            ||||||| ||| |||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct: 1182 ctgaggcttatctgatccggaaaacggaaactcgggggaaatgaatgcaaattagcgacc 1123

                                                                        
Query: 521  tntcgaggtgtgaaaaaacgtanacccaactcatttaatgaanaaatttcaaggttctnt 580
            | |||||| |||||||| |||| |||||||||| | | |||| | ||||||||||||| |
Sbjct: 1122 tctcgaggggtgaaaaaccgtagacccaactcactcagtgaagacatttcaaggttctct 1063

                                       
Query: 581  tttggaactggtctgacgtttttagat 607
            |||||||||||| ||| | ||||||||
Sbjct: 1062 tttggaactggtttgaggcttttagat 1036

>ref|NM_192752.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1080

 Score =  133 bits (67), Expect = 7e-28
 Identities = 156/187 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  gcaaacagatagcgcagcaaaggagccacaaccgctacactaanactattacccagcatg 448
            ||||||||||| |||||||||||  ||||||| |||||||| |  ||||| |||||||| 
Sbjct: 1070 gcaaacagataacgcagcaaaggccccacaactgctacactcaggctattgcccagcata 1011

                                                                        
Query: 449  gcatactgctgtctgaggcctatgtgatccggaaaacggaaactcgagggaaaagaatgc 508
            |||||||| || || |||| |||||||| ||||||  |||||||||| ||||||||||||
Sbjct: 1010 gcatactgttgcctaaggcttatgtgattcggaaagtggaaactcgatggaaaagaatgc 951

                                                                        
Query: 509  aaattggcgacctntcgaggtgtgaaaaaacgtanacccaactcatttaatgaanaaatt 568
            | ||| || ||||  ||||| |||||||| ||||  || ||||| || | |||| |||||
Sbjct: 950  agattagcaacctcacgaggggtgaaaaatcgtaagcctaactccttcagtgaagaaatt 891

                   
Query: 569  tcaaggt 575
            |||||||
Sbjct: 890  tcaaggt 884

>dbj|AK111502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P01, full
            insert sequence
          Length = 1739

 Score =  133 bits (67), Expect = 7e-28
 Identities = 156/187 (83%)
 Strand = Plus / Minus

                                                                        
Query: 389  gcaaacagatagcgcagcaaaggagccacaaccgctacactaanactattacccagcatg 448
            ||||||||||| |||||||||||  ||||||| |||||||| |  ||||| |||||||| 
Sbjct: 1224 gcaaacagataacgcagcaaaggccccacaactgctacactcaggctattgcccagcata 1165

                                                                        
Query: 449  gcatactgctgtctgaggcctatgtgatccggaaaacggaaactcgagggaaaagaatgc 508
            |||||||| || || |||| |||||||| ||||||  |||||||||| ||||||||||||
Sbjct: 1164 gcatactgttgcctaaggcttatgtgattcggaaagtggaaactcgatggaaaagaatgc 1105

                                                                        
Query: 509  aaattggcgacctntcgaggtgtgaaaaaacgtanacccaactcatttaatgaanaaatt 568
            | ||| || ||||  ||||| |||||||| ||||  || ||||| || | |||| |||||
Sbjct: 1104 agattagcaacctcacgaggggtgaaaaatcgtaagcctaactccttcagtgaagaaatt 1045

                   
Query: 569  tcaaggt 575
            |||||||
Sbjct: 1044 tcaaggt 1038

>gb|AY029557.1| Zea mays DNA methyltransferase ZMET4 mRNA, complete cds
          Length = 1464

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 134/164 (81%)
 Strand = Plus / Minus

                                                                        
Query: 389  gcaaacagatagcgcagcaaaggagccacaaccgctacactaanactattacccagcatg 448
            ||||| |||||  ||||||||||| ||||||| |||| ||| | ||| ||||||||||| 
Sbjct: 1092 gcaaagagataatgcagcaaaggacccacaactgctatactcagactgttacccagcata 1033

                                                                        
Query: 449  gcatactgctgtctgaggcctatgtgatccggaaaacggaaactcgagggaaaagaatgc 508
            |||||||| || || |||| |||||||||||| || | |||| | || || || ||||| 
Sbjct: 1032 gcatactgttgcctaaggcttatgtgatccgggaagcagaaatttgaagggaaggaatgg 973

                                                        
Query: 509  aaattggcgacctntcgaggtgtgaaaaaacgtanacccaactc 552
            |||||||| ||||  ||||| |||||||| ||||  ||||||||
Sbjct: 972  aaattggcaacctcacgaggggtgaaaaatcgtaggcccaactc 929

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 389      gcaaacagatagcgcagcaaaggagccacaaccgctacactaanactattacccagcatg 448
                ||||||||||| |||||||||||  ||||||| |||||||| |  ||||| |||||||| 
Sbjct: 24242495 gcaaacagataacgcagcaaaggccccacaactgctacactcaggctattgcccagcata 24242554

                      
Query: 449      gcatac 454
                ||||||
Sbjct: 24242555 gcatac 24242560



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 464      aggcctatgtgatccggaaaacggaaactcgagggaaaagaatgca 509
                |||| |||||||| ||||||  |||||||||| |||||||||||||
Sbjct: 24242730 aggcttatgtgattcggaaagtggaaactcgatggaaaagaatgca 24242775

>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0046B10
          Length = 142596

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 389   gcaaacagatagcgcagcaaaggagccacaaccgctacactaanactattacccagcatg 448
             ||||||||||| |||||||||||  ||||||| |||||||| |  ||||| |||||||| 
Sbjct: 67059 gcaaacagataacgcagcaaaggccccacaactgctacactcaggctattgcccagcata 67118

                   
Query: 449   gcatac 454
             ||||||
Sbjct: 67119 gcatac 67124



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 464   aggcctatgtgatccggaaaacggaaactcgagggaaaagaatgca 509
             |||| |||||||| ||||||  |||||||||| |||||||||||||
Sbjct: 67294 aggcttatgtgattcggaaagtggaaactcgatggaaaagaatgca 67339

>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete sequence
          Length = 203726

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     ttgatttgcatccatttcttg 89
              |||||||||||||||||||||
Sbjct: 145980 ttgatttgcatccatttcttg 146000

>gb|AC158704.3| Microcebus murinus clone CH257-434D18, complete sequence
          Length = 257333

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 226    tccaaaggctgagcttcgtccata 249
              ||||||||||||||||| ||||||
Sbjct: 150474 tccaaaggctgagcttcttccata 150497

>gb|AY810662.1| Schistosoma japonicum SJCHGC07641 protein mRNA, partial cds
          Length = 740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 67  atttgatttgcatccatttc 86
           ||||||||||||||||||||
Sbjct: 248 atttgatttgcatccatttc 229

>gb|AC161055.2| Mus musculus BAC clone RP23-287L7 from chromosome 12, complete sequence
          Length = 189803

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   cataccaccttactttgcac 269
             ||||||||||||||||||||
Sbjct: 24623 cataccaccttactttgcac 24642

>gb|AC158983.2| Mus musculus BAC clone RP23-264L8 from chromosome 14, complete sequence
          Length = 218519

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    agatccaaaggctgagcttc 242
              ||||||||||||||||||||
Sbjct: 109819 agatccaaaggctgagcttc 109838

>emb|AL606521.24| Mouse DNA sequence from clone RP23-280J3 on chromosome 11 Contains the
             5' end of the Mtmr3 gene for myotubularin related protein
             3, two novel genes, the gene for a novel protein similar
             to human ASC-1 complex subunit P100, the gene for a novel
             protein similar to human ubiquinol-cytochrome C reductase
             complex 7.2 kDa protein UQCR10, the Cabp7 gene for calcium
             binding protein 7, the 3' end of the Nf2 gene for
             neurofibromatosis 2 and two CpG islands, complete sequence
          Length = 233997

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   gttgtgggtgaaaggcacaa 195
             ||||||||||||||||||||
Sbjct: 96198 gttgtgggtgaaaggcacaa 96179

>emb|AL596167.1| Listeria innocua Clip11262 complete genome, segment 5/12
          Length = 253050

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tgcatccatttcttgcgcgc 94
              ||||||||||||||||||||
Sbjct: 137995 tgcatccatttcttgcgcgc 137976

>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence
          Length = 196901

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ctcaaaaatatggttgtggg 183
             ||||||||||||||||||||
Sbjct: 61196 ctcaaaaatatggttgtggg 61177

>gb|AC004104.1|AC004104 Homo sapiens 12q24 PAC RPCI5-942N13 (Roswell Park Cancer Institute
             Human PAC library) complete sequence
          Length = 136037

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   gtaaacaaggtgaatatcac 355
             ||||||||||||||||||||
Sbjct: 68166 gtaaacaaggtgaatatcac 68147

>emb|CT033787.9| Mouse DNA sequence from clone RP24-86C3 on chromosome 12, complete
              sequence
          Length = 194345

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    cataccaccttactttgcac 269
              ||||||||||||||||||||
Sbjct: 100350 cataccaccttactttgcac 100369

>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold
          Length = 1595145

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 226     tccaaaggctgagcttcgtccata 249
               ||||||||||||||||| ||||||
Sbjct: 1463926 tccaaaggctgagcttcttccata 1463949


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,604,751
Number of Sequences: 3902068
Number of extensions: 3604751
Number of successful extensions: 72157
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72102
Number of HSP's gapped (non-prelim): 55
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)