ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14j01 |
|---|---|
| Clone Library Name | barley_pub |
>SYA_STAAN (P67011) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 35.0 bits (79), Expect = 0.15 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%) Frame = -1 Query: 502 LQELQLKFENTMLEKKKVAXMN---EKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDL 332 L+++Q KF NTM + KV + EKL++ QD + +K +E+R++ LK I D Sbjct: 708 LEDIQEKF-NTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQ 766 Query: 331 EEQIKDFRY---SIKLXKSMAKSSHADDLK 251 E+I ++ + + + A S DD K Sbjct: 767 VEEINGYKVLVTEVDVPNAKAIRSTMDDFK 796
>SYA_STAAM (P67010) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 876 Score = 35.0 bits (79), Expect = 0.15 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%) Frame = -1 Query: 502 LQELQLKFENTMLEKKKVAXMN---EKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDL 332 L+++Q KF NTM + KV + EKL++ QD + +K +E+R++ LK I D Sbjct: 708 LEDIQEKF-NTMKSQMKVKSDDQVVEKLTQLQDEEKALLKQLEQRDKEITSLKMGNIEDQ 766 Query: 331 EEQIKDFRY---SIKLXKSMAKSSHADDLK 251 E+I ++ + + + A S DD K Sbjct: 767 VEEINGYKVLVTEVDVPNAKAIRSTMDDFK 796
>RAD50_PYRHO (O58687) DNA double-strand break repair rad50 ATPase| Length = 879 Score = 33.1 bits (74), Expect = 0.57 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 15/112 (13%) Frame = -1 Query: 565 EAKKEREHHISVAVD-KTINDKLQELQLKFENTMLEKKKVAXMN------------EKLS 425 E K E + D + + +L ELQ KF+ E+K+ M E+L Sbjct: 627 ELDKAFEELAKIETDIEKVTSQLNELQRKFDQKKYEEKREKMMKLSMEIKGLETKLEELE 686 Query: 424 KSQDIWRQTVKGIEE--RERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAK 275 + +D + T++ ++E +ER K++ + + ++I++ R IK K++ K Sbjct: 687 RRRDEIKSTIEKLKEERKERESAKMELEKLNIAIKRIEELRGKIKEYKALIK 738
>TPR_HUMAN (P12270) Nucleoprotein TPR| Length = 2349 Score = 33.1 bits (74), Expect = 0.57 Identities = 21/80 (26%), Positives = 40/80 (50%) Frame = -1 Query: 565 EAKKEREHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGI 386 +A E+ + +A D+ I + Q + K E EK+ + NE+LS+ + + VK + Sbjct: 90 KALTEKNKELEIAQDRNIAIQSQFTRTK-EELEAEKRDLIRTNERLSQELEYLTEDVKRL 148 Query: 385 EERERAQXKLKDDMILDLEE 326 E+ + K ++ L L+E Sbjct: 149 NEKLKESNTTKGELQLKLDE 168
>RAD50_SULTO (Q96YR5) DNA double-strand break repair rad50 ATPase| Length = 879 Score = 32.7 bits (73), Expect = 0.74 Identities = 20/64 (31%), Positives = 40/64 (62%) Frame = -1 Query: 508 DKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDLE 329 ++L+E + K E +LEK K+ EK+ ++Q+ +K +E+E++ +K + + DLE Sbjct: 270 NRLREEKEKLEKDILEKDKLIEEKEKIIEAQN----KIKLAQEKEKSLKTIKIN-LTDLE 324 Query: 328 EQIK 317 E++K Sbjct: 325 EKLK 328
>K2C1_XENLA (P04266) Keratin, type II cytoskeletal I (Clone PUF23) (Fragment)| Length = 425 Score = 32.3 bits (72), Expect = 0.97 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%) Frame = -1 Query: 544 HHISVAVDKT----INDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEER 377 H S+ KT +N K+Q L+ + EN KK++A +N Q++ G EER Sbjct: 190 HGDSIKNSKTEISDLNRKIQRLKAEIENV---KKQIASLN-----------QSIAGAEER 235 Query: 376 -----ERAQXKLKD------DMILDLEEQIKDFR--YSIKLXKSMAKSSHADDLKG 248 + A+ KLKD + D+ Q+K+++ S KL ++ S++ L+G Sbjct: 236 GNLSLKDAEKKLKDLEDAERKLKADMARQLKEYQELMSAKLALNLEISTYRYMLEG 291
>REST_HUMAN (P30622) Restin (Cytoplasmic linker protein 170 alpha-2) (CLIP-170)| (Reed-Sternberg intermediate filament-associated protein) (Cytoplasmic linker protein 1) Length = 1427 Score = 32.3 bits (72), Expect = 0.97 Identities = 21/92 (22%), Positives = 44/92 (47%) Frame = -1 Query: 529 AVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKD 350 +V +T+ +L+LK +N L+ K+ +LS S E + +Q + Sbjct: 1260 SVVQTLESDKVKLELKVKNLELQLKE---NKRQLSSSSGNTDTQADEDERAQESQIDFLN 1316 Query: 349 DMILDLEEQIKDFRYSIKLXKSMAKSSHADDL 254 +I+DL+ + +D + +++ A + + DDL Sbjct: 1317 SVIVDLQRKNQDLKMKVEMMSEAALNGNGDDL 1348
>RAD50_ARCFU (O29230) DNA double-strand break repair rad50 ATPase| Length = 886 Score = 32.3 bits (72), Expect = 0.97 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Frame = -1 Query: 565 EAKKEREHHISVAVD--KTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVK 392 E KK IS + +++ +KL E E+ + E ++ E L K + Q V+ Sbjct: 190 EEKKAEIERISEEIKSIESLREKLSEEVRNLESRLKELEEHKSRLESLRKQESSVLQEVR 249 Query: 391 GIEERER-AQXKLKD--DMILDLEEQIKDFR 308 G+EE+ R + +LK+ + I DLE++ K+ + Sbjct: 250 GLEEKLRELEKQLKEVVERIEDLEKKAKEVK 280
>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)| (AH antigen) Length = 3210 Score = 32.3 bits (72), Expect = 0.97 Identities = 26/104 (25%), Positives = 48/104 (46%) Frame = -1 Query: 529 AVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKD 350 +VD+ LQE L + T K E+L +++RQ+++ +EE+ +Q +K+ Sbjct: 1618 SVDEVFCSSLQEENLTRKETPSAPAKGV---EELESLCEVYRQSLEKLEEKMESQGIMKN 1674 Query: 349 DMILDLEEQIKDFRYSIKLXKSMAKSSHADDLKGGMLVPLAMES 218 I +LE+ + R + + S + + V L MES Sbjct: 1675 KEIQELEQLLSSERQELDCLRKQYLSENEQWQQKLTSVTLEMES 1718
>SPO15_SCHPO (Q10411) Sporulation-specific protein 15| Length = 1957 Score = 32.0 bits (71), Expect = 1.3 Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 8/117 (6%) Frame = -1 Query: 568 SEAKKEREHHIS------VAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIW 407 S+ +E +H+++ V DK I D + +F+N E+ ++ NEKL K + Sbjct: 297 SKLLEELKHNVANYSDAIVHKDKLIEDLSTRIS-EFDNLKSERDTLSIKNEKLEK---LL 352 Query: 406 RQTVKGIEERERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAKSSHADD--LKGGM 242 R T+ +++ + +L+++M+ +L+E + + +S S ++ LKG + Sbjct: 353 RNTIGSLKDSRTSNSQLEEEMV-ELKESNRTIHSQLTDAESKLSSFEQENKSLKGSI 408 Score = 29.6 bits (65), Expect = 6.3 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Frame = -1 Query: 568 SEAKKEREHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKG 389 S + E H K + KLQ+LQL E E+K+ LS + R + Sbjct: 617 SHQELENNHQTITKQLKDTSSKLQQLQL--ERANFEQKE-----STLSDENNDLRTKLLK 669 Query: 388 IEERERAQXKLKDDM------ILDLEEQIKDFRYSIKLXKSMAKSSH--ADDLKG 248 +EE ++ K ++D+ I L+E ++ +++ K AK+ D+LKG Sbjct: 670 LEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKG 724
>EEA1_HUMAN (Q15075) Early endosome antigen 1 (Endosome-associated protein p162)| (Zinc finger FYVE domain-containing protein 2) Length = 1411 Score = 32.0 bits (71), Expect = 1.3 Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Frame = -1 Query: 568 SEAKKEREHHISVAVD--KTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTV 395 SE +KE + + +D KT + +LQ++ ENT+ E+K++ EK ++ + + Sbjct: 874 SEFEKENQKGKAAILDLEKTCKELKHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLEL 933 Query: 394 KGIEER-ERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAKSSHADDLKGGMLVPLAMES 218 ++E+ +AQ LK + + EEQ + S K + L+G + + + ++ Sbjct: 934 NSMQEQLIQAQNTLKQN---EKEEQQLQGNINELKQSSEQKKKQIEALQGELKIAVLQKT 990 Query: 217 D 215 + Sbjct: 991 E 991
>MYH11_CHICK (P10587) Myosin-11 (Myosin heavy chain, gizzard smooth muscle)| Length = 1978 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Frame = -1 Query: 565 EAKKEREHHISVAVDKTINDK--LQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVK 392 EAK+ E HIS + + K LQE E KKK+ E L++ + + Sbjct: 1362 EAKQNLERHISTLTIQLSDSKKKLQEFTATVETMEEGKKKLQREIESLTQQFEEKAASYD 1421 Query: 391 GIEERERAQXKLKDDMILDLEEQ 323 +E+ + + DD+++DL+ Q Sbjct: 1422 KLEKTKNRLQQELDDLVVDLDNQ 1444
>VP4_ROTHP (P11195) Outer capsid protein VP4 (Hemagglutinin) (Outer layer| protein VP4) [Contains: Outer capsid protein VP8; Outer capsid protein VP5] Length = 775 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Frame = -1 Query: 505 KLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEER-------ERAQXKLKDD 347 +L+E+ + E + A + K+ KS I + T+ I E +R+ LKDD Sbjct: 619 RLKEMITQTEGMSFDDISAAVLKTKIDKSTQIRKNTLPDIVEEASEKFIPKRSYRILKDD 678 Query: 346 MILDLEEQIKDFRYSI 299 ++++ + K F Y I Sbjct: 679 EVMEINTEGKFFAYKI 694
>K2C2_XENLA (P04265) Keratin, type II cytoskeletal I (Clone PUF164) (Fragment)| Length = 419 Score = 31.2 bits (69), Expect = 2.2 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 17/116 (14%) Frame = -1 Query: 544 HHISVAVDKT----INDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEER 377 H S+ KT +N K+Q L+ + EN KK++A +N Q++ G EER Sbjct: 169 HGDSIKNSKTEISDLNLKIQRLKAEIENV---KKQIAFLN-----------QSIAGAEER 214 Query: 376 -----ERAQXKLKD------DMILDLEEQIKDFR--YSIKLXKSMAKSSHADDLKG 248 + A+ KLKD + D+ Q+K+++ S KL ++ S++ L+G Sbjct: 215 GNLALKDAERKLKDLEDAERKLKADMARQLKEYQELMSAKLALNLEISTYRYMLEG 270
>TPM_MIMNO (Q9GZ69) Tropomyosin| Length = 284 Score = 31.2 bits (69), Expect = 2.2 Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 17/97 (17%) Frame = -1 Query: 517 TINDKLQELQLKFEN-----TMLE------KKKVAXMNEKLSKSQDIWRQTVKGIEERER 371 T+N++LQE K EN T LE ++++ + E +S++ T + +EE + Sbjct: 59 TVNEQLQEANTKLENSEKQITQLESDVGGLQRRLTLLEEDYERSEEKLNSTTEKLEEASK 118 Query: 370 A------QXKLKDDMILDLEEQIKDFRYSIKLXKSMA 278 A K+ + EE+I + ++ K++A Sbjct: 119 AADESERNRKVLEGRSNSYEERIDELEKQLETAKNVA 155
>YQOE_CAEEL (Q95QN6) Hypothetical RING finger protein EEED8.16 in chromosome II| Length = 590 Score = 31.2 bits (69), Expect = 2.2 Identities = 17/74 (22%), Positives = 31/74 (41%) Frame = -1 Query: 535 SVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKL 356 +V K + + K E K +N+ L K Q +W+ V+ + E ++ Sbjct: 469 TVTARKVAEKRATQTNEKVNKLANELKDEREINQMLRKDQQVWKGQVEKLIESQKTARTE 528 Query: 355 KDDMILDLEEQIKD 314 + I DL+ Q+ D Sbjct: 529 YEKKIEDLQSQVND 542
>YNZ6_CAEEL (P45966) Hypothetical protein T09A5.6| Length = 173 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Frame = -1 Query: 433 KLSKSQDIWRQTVKGIEERERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMA---KSSHA 263 +L + D + K +ERE + K +DD IL LE+++++F+ + + +A ++ + Sbjct: 14 ELHERNDREKLARKTEKEREEERRKQEDDKILQLEKKLEEFQENARFIGDLASNFQTKYQ 73 Query: 262 DDLKG 248 D L G Sbjct: 74 DALNG 78
>MAD1_YEAST (P40957) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 749 Score = 30.8 bits (68), Expect = 2.8 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Frame = -1 Query: 505 KLQELQLKFENTMLEKKKVAXMNE---------KLSKSQDIWRQTVKGIEERERAQXKLK 353 ++++LQL+ + +LEKK A ++E L +S D Q +K ++ER K Sbjct: 79 EIEKLQLQKQTNILEKKYKATIDELEKALNDTKYLYESNDKLEQELKSLKERSANSMNDK 138 Query: 352 DDMI---------LDLEEQIKDFRYSIKLXKSMAKSSH 266 D I DLE + +Y KL K + H Sbjct: 139 DKCIEELRTTLQNKDLEMETLRQQYDSKLSKVTNQCDH 176
>IF31_PONPY (Q5R8D1) Eukaryotic translation initiation factor 3 subunit 1| (eIF-3 alpha) Length = 259 Score = 30.8 bits (68), Expect = 2.8 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = -1 Query: 523 DKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDM 344 D ++K +E ++K E + EKKK+A EK+ + + RQ K EE ++ + ++ Sbjct: 54 DDDDDEKKEEAEVKPEVKISEKKKIA---EKIKEKE---RQQKKRQEEIKKRLEEPEEPK 107 Query: 343 ILDLEEQIKD 314 +L EEQ+ D Sbjct: 108 VLTPEEQLAD 117
>IF31_HUMAN (O75822) Eukaryotic translation initiation factor 3 subunit 1| (eIF-3 alpha) (eIF3 p35) (eIF3j) Length = 258 Score = 30.8 bits (68), Expect = 2.8 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = -1 Query: 523 DKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDM 344 D ++K +E ++K E + EKKK+A EK+ + + RQ K EE ++ + ++ Sbjct: 53 DDDDDEKKEEAEVKPEVKISEKKKIA---EKIKEKE---RQQKKRQEEIKKRLEEPEEPK 106 Query: 343 ILDLEEQIKD 314 +L EEQ+ D Sbjct: 107 VLTPEEQLAD 116
>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)| Length = 1947 Score = 30.4 bits (67), Expect = 3.7 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 559 KKEREHHISVAVDKTINDKLQELQLKFENTM-LEKKKVAXMNEKLSKSQDIWRQTVKGIE 383 +K RE VA DK DKLQEL K + L+KK++ E+ + +R +E Sbjct: 1861 RKVREFEFQVAEDKKNYDKLQELVEKLTAKLKLQKKQLEEAEEQANSHLSKYRTVQLSLE 1920 Query: 382 ERE 374 E Sbjct: 1921 TAE 1923
>MYH11_MOUSE (O08638) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 30.4 bits (67), Expect = 3.7 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 9/108 (8%) Frame = -1 Query: 568 SEAKKEREHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKG 389 +E K+ + H +A +KT+ ++LQ + E ++ + K + ++I + Sbjct: 873 TELKELEQKHTQLAEEKTLLQ--EQLQAETELYAESEEMRVRLAAKKQELEEILHEMEAR 930 Query: 388 IEERE------RAQXKLKDDMILDLEEQIKD---FRYSIKLXKSMAKS 272 +EE E +A+ K +LDLEEQ+++ R ++L K A++ Sbjct: 931 LEEEEDRRQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEA 978
>ATRIP_MOUSE (Q8BMG1) ATR-interacting protein (ATM and Rad3-related-interacting| protein) Length = 785 Score = 30.4 bits (67), Expect = 3.7 Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 4/88 (4%) Frame = -1 Query: 511 NDKLQELQLKF----ENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDM 344 N +L+ LQ+++ E ++++ N ++ +D RQT +EE++R+ L+ + Sbjct: 111 NFELEVLQIQYKELKEKLKAMEEEILIKNGEIKILRDSLRQTESVLEEQKRSHFLLEQEK 170 Query: 343 ILDLEEQIKDFRYSIKLXKSMAKSSHAD 260 L E+ K+F ++ +S + A+ Sbjct: 171 TQALSEKEKEFSRKLQSLQSELQFKDAE 198
>Y1209_CAMJE (Q9PN86) UPF0144 protein Cj1209| Length = 517 Score = 30.4 bits (67), Expect = 3.7 Identities = 27/97 (27%), Positives = 42/97 (43%) Frame = -1 Query: 565 EAKKEREHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGI 386 E KK+ E K N K +L K + E++K+ E L KSQ K I Sbjct: 65 EVKKKYEEKTH-KFQKDFNQKFDDLSKKEQKLQQEEEKLKEDKEYLCKSQ-------KHI 116 Query: 385 EERERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAK 275 + + KLK+ L++ +K +S L ++ AK Sbjct: 117 QNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAK 153
>DTNB_HUMAN (O60941) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)| Length = 627 Score = 30.0 bits (66), Expect = 4.8 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Frame = -1 Query: 565 EAKKEREHHISVAVDKT--INDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVK 392 +A K++ I+ +K I ++Q L+L+ E + A N L + RQ Sbjct: 431 DANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKD 490 Query: 391 GIEERERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAKSS-HADDLKGG 245 +E+R A + + ++++ LEE +K + + + A S H GG Sbjct: 491 ELEQRMSALQESRRELMVQLEELMKLLKEEEQKQAAQATGSPHTSPTHGG 540
>T240L_HUMAN (Q71F56) Thyroid hormone receptor-associated protein 2 (Thyroid| hormone receptor-associated protein complex 240 kDa component-like) Length = 2210 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 153 AKPPXNXXXXXXXXXXXPFPESDSMASGTSIPPLRSSA 266 A PP P + S ASG+S+PP+ SSA Sbjct: 1554 AAPPAGSAFNPTSNSSSTNPAASSSASGSSVPPVSSSA 1591
>RAD50_THEMA (Q9X1X1) Probable DNA double-strand break repair rad50 ATPase| Length = 852 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Frame = -1 Query: 436 EKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDLEE---QIKDFRYSI-KLXKSMAKSS 269 EKL + + T+ ++ER+++ L +D+++ +EE +K R I K+ + + + Sbjct: 457 EKLDQKRSELENTLNVLKERKKSLSSLIEDLLMKIEEGKKNLKSIRNQIEKIEEELHRLG 516 Query: 268 HADDLK 251 +++DL+ Sbjct: 517 YSEDLE 522
>MYPT2_HUMAN (O60237) Protein phosphatase 1 regulatory subunit 12B (Myosin| phosphatase-targeting subunit 2) (Myosin phosphatase target subunit 2) Length = 982 Score = 30.0 bits (66), Expect = 4.8 Identities = 22/69 (31%), Positives = 40/69 (57%) Frame = -1 Query: 523 DKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDM 344 ++ + KLQE QL+ + + +KVA +K K+ D R +V +E+RER + K Sbjct: 893 NQKLKTKLQEAQLELADIKSKLEKVA--QQKQEKTSD--RSSVLEMEKRERRALERK--- 945 Query: 343 ILDLEEQIK 317 + ++EE++K Sbjct: 946 MSEMEEEMK 954
>CH60_GEOSL (Q747C7) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 544 Score = 30.0 bits (66), Expect = 4.8 Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 17/122 (13%) Frame = -1 Query: 538 ISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIE-------- 383 IS DKTI D + + K + K+ V + E +K+ + +TV+G++ Sbjct: 150 ISANNDKTIGDIIAQAMEK-----VGKEGVITVEE--AKAMETSLETVEGMQFDRGYLSP 202 Query: 382 ----ERERAQXKLKDDMILDLEEQIKDFRYSIKLXKSMAKSSH-----ADDLKGGMLVPL 230 + ER + L++ MIL +++I + + + + + AKS A+D++G L L Sbjct: 203 YFVTDPERMEASLENAMILIHDKKISNMKDLLPVLEQTAKSGRPLLIIAEDIEGEALATL 262 Query: 229 AM 224 + Sbjct: 263 VV 264
>YG3A_YEAST (P53278) Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic| region Length = 816 Score = 30.0 bits (66), Expect = 4.8 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Frame = -1 Query: 526 VDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVK-GIEERERAQXKLKD 350 +D I+ L E+ + + EK +++ + ++L + + +K EER+R + L + Sbjct: 629 IDNQISSLLNEVTIIKQENANEKTQLSAITKRLEDERRAHEEQLKLEAEERKRKEENLLE 688 Query: 349 DMILDLEEQIKDFRYSIKLXKSMAKSSHADDL 254 +LEEQ + + + K ++ D L Sbjct: 689 KQRQELEEQAHQAQLDHEQQITQVKQTYNDQL 720
>GOGA3_MOUSE (P55937) Golgin subfamily A member 3 (Golgin-160) (Male-enhanced| antigen 2) (MEA-2) Length = 1487 Score = 30.0 bits (66), Expect = 4.8 Identities = 19/82 (23%), Positives = 39/82 (47%) Frame = -1 Query: 529 AVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKD 350 A K ++ +++EL+ + EKK V + +L K + Q + +E ++ K +D Sbjct: 867 ATKKRLDSEMKELRQELIKLQGEKKTVEVEHSRLQKDMSLVHQQMAELEGHLQSVQKERD 926 Query: 349 DMILDLEEQIKDFRYSIKLXKS 284 +M + L+ D I L ++ Sbjct: 927 EMEIHLQSLKFDKEQMIALTEA 948
>Y1672_CLOPE (Q8XJT1) UPF0144 protein CPE1672| Length = 530 Score = 29.6 bits (65), Expect = 6.3 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -1 Query: 556 KEREHHISVAVDKTINDKLQELQLKFENTMLEKKK-VAXMNEKLSKSQDIWRQTVKGIEE 380 KE H + +DK D+ E+Q +FE ++++++ + E L K +D + I+E Sbjct: 80 KEEVHKLRADLDKETRDRRNEIQ-RFERRLIQREESLDKKGEMLEKREDSINKKSIEIQE 138 Query: 379 RERAQXKLKDDMILDLE 329 E L + +LE Sbjct: 139 LEERVQNLYGEQRAELE 155
>UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 29.6 bits (65), Expect = 6.3 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Frame = -1 Query: 517 TINDKLQE-LQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXK--LKDD 347 T + KLQE L EN L+ K A K++ ++ QTV IEER R LK+ Sbjct: 376 TPSAKLQEVLDYLTENASLQMKSPAITTTLDGKNKTLYLQTVASIEERTRPNLSKTLKEL 435 Query: 346 MILDLEE 326 ++D +E Sbjct: 436 GLVDGQE 442
>RPOZ_LACLA (Q9CEE4) DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (RNAP| omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit) Length = 117 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/53 (32%), Positives = 31/53 (58%) Frame = -1 Query: 478 ENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDLEEQI 320 +NT+ +++A K+ S ++ R+T+ E ER Q K+K+ +I +EQI Sbjct: 45 KNTLRALEEIADGTVKIHPSPELKRETLVEKRELERLQAKMKEQLI---KEQI 94
>MYH11_RABIT (P35748) Myosin-11 (Myosin heavy chain, smooth muscle isoform)| (SMMHC) Length = 1972 Score = 29.6 bits (65), Expect = 6.3 Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 5/86 (5%) Frame = -1 Query: 565 EAKKEREHHISVAVDKTINDKLQELQLKFENTM--LEKKKVAXMNEKLSKSQDIWRQTVK 392 EAK+ E HIS ++ ++D ++LQ F +T+ LE+ K E S +Q + + Sbjct: 1357 EAKQNLERHIST-LNIQLSDSKKKLQ-DFASTVESLEEGKKRFQKEIESLTQQ-YEEKAA 1413 Query: 391 GIEERERAQXKLK---DDMILDLEEQ 323 ++ E+ + +L+ DD+++DL+ Q Sbjct: 1414 AYDKLEKTKNRLQQELDDLVVDLDNQ 1439
>MOAA_HELPY (P56414) Molybdenum cofactor biosynthesis protein A| Length = 321 Score = 29.6 bits (65), Expect = 6.3 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Frame = -1 Query: 418 QDIWRQTVKGIEERERAQXKLK----------DDMILDLEEQIKDFRYSIKLXKSMAKSS 269 +D + T++GIEE + KLK DD IL+L E K+ I+ + M +++ Sbjct: 134 KDALKNTLEGIEESLKVGLKLKLNTVVIKSVNDDEILELLEYAKNRHIQIRYIEFM-ENT 192 Query: 268 HADDLKGGM 242 HA L G+ Sbjct: 193 HAKSLVKGL 201
>GRAP1_MOUSE (Q8VD04) GRIP1-associated protein 1 (GRASP-1) (HCMV-interacting| protein) Length = 806 Score = 29.3 bits (64), Expect = 8.2 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 13/98 (13%) Frame = -1 Query: 571 LSEAKKEREHHI--SVAVDKTINDKLQELQLKFENTMLE-----------KKKVAXMNEK 431 L E KK +E + + +K +L+ LQ E + ++++ E Sbjct: 441 LHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEES 500 Query: 430 LSKSQDIWRQTVKGIEERERAQXKLKDDMILDLEEQIK 317 L + Q +T+K E A+ K KD+ + ++ EQ++ Sbjct: 501 LQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQ 538
>RT26_RAT (Q9EPJ3) 28S ribosomal protein S26, mitochondrial precursor| (MRP-S26) (5'OT-EST protein) Length = 200 Score = 29.3 bits (64), Expect = 8.2 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%) Frame = -1 Query: 571 LSEAKKE---REHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQ 401 L+E K + REH +A ++ N +LQEL++ + +++ + ++Q+ Sbjct: 90 LAERKAQEAIREHQELMAWNREENRRLQELRIARLQLEAQAQELRQAEVQAQRAQE---- 145 Query: 400 TVKGIEERERAQXKLKDDMILDLEEQIKDF 311 E+A +LK+ +L L+E+ K+F Sbjct: 146 --------EQAWVQLKEQEVLKLQEEAKNF 167
>41_HUMAN (P11171) Protein 4.1 (Band 4.1) (P4.1) (EPB4.1) (4.1R)| Length = 864 Score = 29.3 bits (64), Expect = 8.2 Identities = 24/90 (26%), Positives = 44/90 (48%) Frame = -1 Query: 568 SEAKKEREHHISVAVDKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKG 389 +EA K + HI V V + D+ Q+L K E+ + +KK E+L R + Sbjct: 611 TEAWKVEKTHIEVTVPTSNGDQTQKLAEKTEDLIRMRKK---KRERLDGENIYIRHSNLM 667 Query: 388 IEERERAQXKLKDDMILDLEEQIKDFRYSI 299 +E+ +++Q ++K + E K+F S+ Sbjct: 668 LEDLDKSQEEIKKHH-ASISELKKNFMESV 696
>IF31_MOUSE (Q66JS6) Eukaryotic translation initiation factor 3 subunit 1| (eIF-3 alpha) Length = 263 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/70 (30%), Positives = 38/70 (54%) Frame = -1 Query: 523 DKTINDKLQELQLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDM 344 D ++ +E ++K E + EKKK+A EK+ + + RQ K EE ++ + ++ Sbjct: 58 DDDDDENKEEAEVKPEVKISEKKKIA---EKIKEKE---RQQKKRQEEIKKRLEEPEESK 111 Query: 343 ILDLEEQIKD 314 +L EEQ+ D Sbjct: 112 VLTPEEQLAD 121
>FTSY_MYCHO (O32861) Cell division protein ftsY homolog| Length = 351 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/66 (27%), Positives = 33/66 (50%) Frame = -1 Query: 490 QLKFENTMLEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKLKDDMILDLEEQIKDF 311 Q + E +++K K+ LSKS + + +K ++ + K+ ++ DLEE + Sbjct: 31 QRQLEKELIKKNKLNTYIAGLSKSNSSFNEHIKELQNKHN---KIDEEFFEDLEEMLIMS 87 Query: 310 RYSIKL 293 SIKL Sbjct: 88 DISIKL 93
>MOAA_HELPJ (Q9ZL75) Molybdenum cofactor biosynthesis protein A| Length = 321 Score = 29.3 bits (64), Expect = 8.2 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Frame = -1 Query: 418 QDIWRQTVKGIEERERAQXKLK----------DDMILDLEEQIKDFRYSIKLXKSMAKSS 269 +D + T++GIEE + KLK DD IL+L E K+ I+ + M +++ Sbjct: 134 KDALKNTLEGIEESLKVGLKLKLNTVVMKGVNDDEILELLEYAKNRSIQIRYIEFM-ENT 192 Query: 268 HADDLKGGM 242 HA L G+ Sbjct: 193 HAKSLVKGL 201
>EX7L_BACSU (P54521) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 448 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = -1 Query: 520 KTINDKLQELQLKFENTM-----LEKKKVAXMNEKLSKSQDIWRQTVKGIEERERAQXKL 356 K +N ++++L +F+ + L +V L+ +D ++V IEE++R + KL Sbjct: 372 KNMNIQMKQLHSQFQTVLGKLNALSPLQVMERGYSLAYKEDKLIKSVSQIEEQDRLEIKL 431 Query: 355 KDDMI 341 KD ++ Sbjct: 432 KDGVL 436 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,397,449 Number of Sequences: 219361 Number of extensions: 1234724 Number of successful extensions: 3485 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 3327 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3480 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
