ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14i18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK067584.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
2dbj|AK060165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
4dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
5dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
6ref|XM_575849.1| PREDICTED: Rattus norvegicus similar to high-mo... 44 0.58
7ref|NM_125110.4| Arabidopsis thaliana S-adenosylmethionine-depen... 42 2.3
8gb|AC122035.2| Mus musculus BAC clone RP24-414B1 from 15, comple... 42 2.3
9gb|AY096365.1| Arabidopsis thaliana putative carboxyl methylase ... 42 2.3
10gb|AY065258.1| Arabidopsis thaliana putative protein carboxyl me... 42 2.3
11emb|BX833918.1|CNS09Z27 Arabidopsis thaliana Full-length cDNA Co... 42 2.3
12emb|BX833780.1|CNS09Z01 Arabidopsis thaliana Full-length cDNA Co... 42 2.3
13gb|AC167926.2| Mycosphaerella graminicola clone JGIBBWB-9A8, com... 40 9.1
14gb|AC186562.1| Homo sapiens chromosome X clone fa4622, complete ... 40 9.1
15gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, c... 40 9.1
16gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 40 9.1
17gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
18gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome... 40 9.1
19emb|CR376833.3| Human DNA sequence from clone RP13-668A4 on chro... 40 9.1
20gb|AC092982.3| Homo sapiens 3q BAC RP11-758I14 (Roswell Park Can... 40 9.1
21dbj|AB219424.1| Geobacillus stearothermophilus genes for putativ... 40 9.1
22gb|AC116640.4| Homo sapiens BAC clone RP11-579B8 from 4, complet... 40 9.1
23gb|AC162454.3| Mus musculus chromosome 1, clone RP23-7D20, compl... 40 9.1
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
25gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, comple... 40 9.1
26emb|AJ322539.1|HSA322539 Homo sapiens genomic sequence surroundi... 40 9.1
27gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromoso... 40 9.1
28gb|AC133581.22| Mus musculus chromosome 1, clone RP24-395P3, com... 40 9.1
29gb|AC115783.11| Mus musculus chromosome 18, clone RP23-168P8, co... 40 9.1
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1 
>dbj|AK067584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112C12, full
           insert sequence
          Length = 1258

 Score =  202 bits (102), Expect = 1e-48
 Identities = 174/198 (87%)
 Strand = Plus / Minus

                                                                       
Query: 467 ccacaagtgaggacaaggtaggacttctttgctttcgaactatgaggccagtcaataacc 526
           ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct: 701 ccacaagtgaggacaaggtaggatttctttgcttttgaactgtgaggccagtcaacaacc 642

                                                                       
Query: 527 actccaccagcaaatccggctttcatggcaaaagacacgagcatttcggtttgcttcaca 586
           |||||||| |||||||| ||   |||||||  || ||||| ||||||  | |||||||||
Sbjct: 641 actccacctgcaaatccagcacgcatggcagcagtcacgatcatttcactctgcttcaca 582

                                                                       
Query: 587 ttgtcagcataaaactgtagaacggcccttgctcccctggctaagcatctatatagtgat 646
           || ||||||||||| || | |||||| ||||||||||| |||| ||||||||||| ||||
Sbjct: 581 ttatcagcataaaattgcaaaacggctcttgctccccttgctaggcatctatataatgat 522

                             
Query: 647 ccaaagaaagcctttaac 664
           ||||||||||||||||||
Sbjct: 521 ccaaagaaagcctttaac 504



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                       
Query: 207 ttttccgcttccgccccgtgtactttgtgtccgcggggacttcgcgtcctcttttcctca 266
           |||||||||||||||| ||||| || ||||||||||| || || |||||||   | ||||
Sbjct: 967 ttttccgcttccgccctgtgtatttggtgtccgcgggcacctcccgtcctcgccttctca 908

                                                            
Query: 267 tctgctcttttttcctcagcagccaatccttgcccctgccgttcttctt 315
            |||||| |||||  |||  |||||| |||||||| |||||||||||||
Sbjct: 907 gctgctcctttttgttcaagagccaagccttgcccttgccgttcttctt 859
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>dbj|AK060165.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C07, full
           insert sequence
          Length = 1088

 Score =  202 bits (102), Expect = 1e-48
 Identities = 174/198 (87%)
 Strand = Plus / Minus

                                                                       
Query: 467 ccacaagtgaggacaaggtaggacttctttgctttcgaactatgaggccagtcaataacc 526
           ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct: 579 ccacaagtgaggacaaggtaggatttctttgcttttgaactgtgaggccagtcaacaacc 520

                                                                       
Query: 527 actccaccagcaaatccggctttcatggcaaaagacacgagcatttcggtttgcttcaca 586
           |||||||| |||||||| ||   |||||||  || ||||| ||||||  | |||||||||
Sbjct: 519 actccacctgcaaatccagcacgcatggcagcagtcacgatcatttcactctgcttcaca 460

                                                                       
Query: 587 ttgtcagcataaaactgtagaacggcccttgctcccctggctaagcatctatatagtgat 646
           || ||||||||||| || | |||||| ||||||||||| |||| ||||||||||| ||||
Sbjct: 459 ttatcagcataaaattgcaaaacggctcttgctccccttgctaggcatctatataatgat 400

                             
Query: 647 ccaaagaaagcctttaac 664
           ||||||||||||||||||
Sbjct: 399 ccaaagaaagcctttaac 382



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                       
Query: 207 ttttccgcttccgccccgtgtactttgtgtccgcggggacttcgcgtcctcttttcctca 266
           |||||||||||||||| ||||| || ||||||||||| || || |||||||   | ||||
Sbjct: 845 ttttccgcttccgccctgtgtatttggtgtccgcgggcacctcccgtcctcgccttctca 786

                                                            
Query: 267 tctgctcttttttcctcagcagccaatccttgcccctgccgttcttctt 315
            |||||| |||||  |||  |||||| |||||||| |||||||||||||
Sbjct: 785 gctgctcctttttgttcaagagccaagccttgcccttgccgttcttctt 737
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  131 bits (66), Expect = 3e-27
 Identities = 129/150 (86%)
 Strand = Plus / Minus

                                                                            
Query: 509      tgaggccagtcaataaccactccaccagcaaatccggctttcatggcaaaagacacgagc 568
                ||||||||||||| |||||||||||| |||||||| ||   |||||||  || ||||| |
Sbjct: 34316736 tgaggccagtcaacaaccactccacctgcaaatccagcacgcatggcagcagtcacgatc 34316677

                                                                            
Query: 569      atttcggtttgcttcacattgtcagcataaaactgtagaacggcccttgctcccctggct 628
                |||||  | ||||||||||| ||||||||||| || | |||||| ||||||||||| |||
Sbjct: 34316676 atttcactctgcttcacattatcagcataaaattgcaaaacggctcttgctccccttgct 34316617

                                              
Query: 629      aagcatctatatagtgatccaaagaaagcc 658
                | ||||||||||| ||||||||||||||||
Sbjct: 34316616 aggcatctatataatgatccaaagaaagcc 34316587



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                            
Query: 207      ttttccgcttccgccccgtgtactttgtgtccgcggggacttcgcgtcctcttttcctca 266
                |||||||||||||||| ||||| || ||||||||||| || || |||||||   | ||||
Sbjct: 34317622 ttttccgcttccgccctgtgtatttggtgtccgcgggcacctcccgtcctcgccttctca 34317563

                                                                 
Query: 267      tctgctcttttttcctcagcagccaatccttgcccctgccgttcttctt 315
                 |||||| |||||  |||  |||||| |||||||| |||||||||||||
Sbjct: 34317562 gctgctcctttttgttcaagagccaagccttgcccttgccgttcttctt 34317514



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                         
Query: 467      ccacaagtgaggacaaggtaggacttctttgctttcgaact 507
                ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 34316880 ccacaagtgaggacaaggtaggatttctttgcttttgaact 34316840
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>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score =  131 bits (66), Expect = 3e-27
 Identities = 129/150 (86%)
 Strand = Plus / Minus

                                                                         
Query: 509   tgaggccagtcaataaccactccaccagcaaatccggctttcatggcaaaagacacgagc 568
             ||||||||||||| |||||||||||| |||||||| ||   |||||||  || ||||| |
Sbjct: 14383 tgaggccagtcaacaaccactccacctgcaaatccagcacgcatggcagcagtcacgatc 14324

                                                                         
Query: 569   atttcggtttgcttcacattgtcagcataaaactgtagaacggcccttgctcccctggct 628
             |||||  | ||||||||||| ||||||||||| || | |||||| ||||||||||| |||
Sbjct: 14323 atttcactctgcttcacattatcagcataaaattgcaaaacggctcttgctccccttgct 14264

                                           
Query: 629   aagcatctatatagtgatccaaagaaagcc 658
             | ||||||||||| ||||||||||||||||
Sbjct: 14263 aggcatctatataatgatccaaagaaagcc 14234



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                         
Query: 207   ttttccgcttccgccccgtgtactttgtgtccgcggggacttcgcgtcctcttttcctca 266
             |||||||||||||||| ||||| || ||||||||||| || || |||||||   | ||||
Sbjct: 15269 ttttccgcttccgccctgtgtatttggtgtccgcgggcacctcccgtcctcgccttctca 15210

                                                              
Query: 267   tctgctcttttttcctcagcagccaatccttgcccctgccgttcttctt 315
              |||||| |||||  |||  |||||| |||||||| |||||||||||||
Sbjct: 15209 gctgctcctttttgttcaagagccaagccttgcccttgccgttcttctt 15161



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                      
Query: 467   ccacaagtgaggacaaggtaggacttctttgctttcgaact 507
             ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 14527 ccacaagtgaggacaaggtaggatttctttgcttttgaact 14487
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>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0689B12
          Length = 154745

 Score =  131 bits (66), Expect = 3e-27
 Identities = 129/150 (86%)
 Strand = Plus / Minus

                                                                          
Query: 509    tgaggccagtcaataaccactccaccagcaaatccggctttcatggcaaaagacacgagc 568
              ||||||||||||| |||||||||||| |||||||| ||   |||||||  || ||||| |
Sbjct: 152009 tgaggccagtcaacaaccactccacctgcaaatccagcacgcatggcagcagtcacgatc 151950

                                                                          
Query: 569    atttcggtttgcttcacattgtcagcataaaactgtagaacggcccttgctcccctggct 628
              |||||  | ||||||||||| ||||||||||| || | |||||| ||||||||||| |||
Sbjct: 151949 atttcactctgcttcacattatcagcataaaattgcaaaacggctcttgctccccttgct 151890

                                            
Query: 629    aagcatctatatagtgatccaaagaaagcc 658
              | ||||||||||| ||||||||||||||||
Sbjct: 151889 aggcatctatataatgatccaaagaaagcc 151860



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 91/109 (83%)
 Strand = Plus / Minus

                                                                          
Query: 207    ttttccgcttccgccccgtgtactttgtgtccgcggggacttcgcgtcctcttttcctca 266
              |||||||||||||||| ||||| || ||||||||||| || || |||||||   | ||||
Sbjct: 152895 ttttccgcttccgccctgtgtatttggtgtccgcgggcacctcccgtcctcgccttctca 152836

                                                               
Query: 267    tctgctcttttttcctcagcagccaatccttgcccctgccgttcttctt 315
               |||||| |||||  |||  |||||| |||||||| |||||||||||||
Sbjct: 152835 gctgctcctttttgttcaagagccaagccttgcccttgccgttcttctt 152787



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                       
Query: 467    ccacaagtgaggacaaggtaggacttctttgctttcgaact 507
              ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 152153 ccacaagtgaggacaaggtaggatttctttgcttttgaact 152113
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>ref|XM_575849.1| PREDICTED: Rattus norvegicus similar to high-mobility group box 1
           (LOC500482), mRNA
          Length = 924

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 432 ctttcccctttggaagagatgt 453
           ||||||||||||||||||||||
Sbjct: 485 ctttcccctttggaagagatgt 464
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>ref|NM_125110.4| Arabidopsis thaliana S-adenosylmethionine-dependent
           methyltransferase AT5G57280 mRNA, complete cds
          Length = 1099

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 638 tatagtgatccaaagaaagccttta 662
           |||||||| ||||||||||||||||
Sbjct: 506 tatagtgaaccaaagaaagccttta 482
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>gb|AC122035.2| Mus musculus BAC clone RP24-414B1 from 15, complete sequence
          Length = 179617

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 12     caccatgtcatcattacatat 32
              |||||||||||||||||||||
Sbjct: 117770 caccatgtcatcattacatat 117790
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>gb|AY096365.1| Arabidopsis thaliana putative carboxyl methylase (At5g57280) mRNA,
           complete cds
          Length = 901

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 638 tatagtgatccaaagaaagccttta 662
           |||||||| ||||||||||||||||
Sbjct: 443 tatagtgaaccaaagaaagccttta 419
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>gb|AY065258.1| Arabidopsis thaliana putative protein carboxyl methylase
           (At5g57280) mRNA, complete cds
          Length = 1125

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 638 tatagtgatccaaagaaagccttta 662
           |||||||| ||||||||||||||||
Sbjct: 506 tatagtgaaccaaagaaagccttta 482
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>emb|BX833918.1|CNS09Z27 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZB11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1013

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 638 tatagtgatccaaagaaagccttta 662
           |||||||| ||||||||||||||||
Sbjct: 494 tatagtgaaccaaagaaagccttta 470
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>emb|BX833780.1|CNS09Z01 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL76ZG02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 946

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 638 tatagtgatccaaagaaagccttta 662
           |||||||| ||||||||||||||||
Sbjct: 451 tatagtgaaccaaagaaagccttta 427
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>gb|AC167926.2| Mycosphaerella graminicola clone JGIBBWB-9A8, complete sequence
          Length = 40143

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   ttcttcttgttcaccttctgcctc 331
             ||||||||||||||||||| ||||
Sbjct: 25303 ttcttcttgttcaccttcttcctc 25280
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>gb|AC186562.1| Homo sapiens chromosome X clone fa4622, complete sequence
          Length = 20121

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aaacatgacactaatagcat 60
            ||||||||||||||||||||
Sbjct: 5562 aaacatgacactaatagcat 5543
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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    gacagaagatgtaccacaag 473
              ||||||||||||||||||||
Sbjct: 118917 gacagaagatgtaccacaag 118936
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete
            sequence
          Length = 208709

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 33   atcctcacaaacatgacactaata 56
            ||||||||||||||||||| ||||
Sbjct: 4035 atcctcacaaacatgacaccaata 4058
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>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08,
              complete sequence
          Length = 173088

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 253    tcctcttttcctcatctgctcttttttc 280
              ||||| ||| ||||||||||||||||||
Sbjct: 132109 tcctcgtttgctcatctgctcttttttc 132082
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>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence
          Length = 231668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 33     atcctcacaaacatgacactaata 56
              ||||||||||||||||||| ||||
Sbjct: 148877 atcctcacaaacatgacaccaata 148900
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>emb|CR376833.3| Human DNA sequence from clone RP13-668A4 on chromosome X, complete
            sequence
          Length = 4671

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 41   aaacatgacactaatagcat 60
            ||||||||||||||||||||
Sbjct: 4233 aaacatgacactaatagcat 4214
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>gb|AC092982.3| Homo sapiens 3q BAC RP11-758I14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189219

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 53     aatagcatttgccaaaactgctgc 76
              ||||||||||| ||||||||||||
Sbjct: 154998 aatagcatttgacaaaactgctgc 155021
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>dbj|AB219424.1| Geobacillus stearothermophilus genes for putative PTS system
            trehalose-specific enzyme, trehalose-6-phosphate
            hydrolase, complete cds
          Length = 3335

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 494  tttgctttcgaactatgagg 513
            ||||||||||||||||||||
Sbjct: 3142 tttgctttcgaactatgagg 3161
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>gb|AC116640.4| Homo sapiens BAC clone RP11-579B8 from 4, complete sequence
          Length = 15294

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   cttcttgttcaccttctgcc 329
             ||||||||||||||||||||
Sbjct: 14641 cttcttgttcaccttctgcc 14622
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>gb|AC162454.3| Mus musculus chromosome 1, clone RP23-7D20, complete sequence
          Length = 209951

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    ttcttgttcaccttctgcct 330
              ||||||||||||||||||||
Sbjct: 161284 ttcttgttcaccttctgcct 161303
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 253      tcctcttttcctcatctgctcttttttc 280
                ||||| ||| ||||||||||||||||||
Sbjct: 22209189 tcctcgtttgctcatctgctcttttttc 22209216
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>gb|AC108034.2| Homo sapiens BAC clone RP11-137J16 from 4, complete sequence
          Length = 164396

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 310    cttcttgttcaccttctgcc 329
              ||||||||||||||||||||
Sbjct: 163050 cttcttgttcaccttctgcc 163069
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>emb|AJ322539.1|HSA322539 Homo sapiens genomic sequence surrounding NotI site, clone
           NB6-1112C
          Length = 981

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 422 ccattttcacctttcccctt 441
           ||||||||||||||||||||
Sbjct: 773 ccattttcacctttcccctt 754
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>gb|AC171018.2| Gallus gallus BAC clone CH261-11F14 from chromosome ul, complete sequence
          Length = 216886

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    cacctttcccctttggaaga 448
              ||||||||||||||||||||
Sbjct: 213048 cacctttcccctttggaaga 213067
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>gb|AC133581.22| Mus musculus chromosome 1, clone RP24-395P3, complete sequence
          Length = 158696

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ttcttgttcaccttctgcct 330
             ||||||||||||||||||||
Sbjct: 77376 ttcttgttcaccttctgcct 77357
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>gb|AC115783.11| Mus musculus chromosome 18, clone RP23-168P8, complete sequence
          Length = 187870

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    tttggaagagatgtgacaga 459
              ||||||||||||||||||||
Sbjct: 162797 tttggaagagatgtgacaga 162816
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 253      tcctcttttcctcatctgctcttttttc 280
                ||||| ||| ||||||||||||||||||
Sbjct: 22519100 tcctcgtttgctcatctgctcttttttc 22519127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,822,142
Number of Sequences: 3902068
Number of extensions: 5822142
Number of successful extensions: 109130
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108995
Number of HSP's gapped (non-prelim): 135
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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