>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0082F22, complete sequence
          Length = 176038

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 103/124 (83%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                          
Query: 403    tgccaaggttcgcttgttgccgaatagggagctcaccttggagtacctctgcctcagcgg 462
              ||||| ||| |||||||||  ||| |||||||||| | |||||||| |||||||||||||
Sbjct: 141070 tgccatggtccgcttgttgttgaacagggagctcatcctggagtacttctgcctcagcgg 141011

                                                                          
Query: 463    tgtcggggtagtctcgacatggctccatctcttgacggagtccaccgaggaggtgtcatc 522
              |||||||   |||||  | |||||||| |||||||| || ||||| ||||| | ||| ||
Sbjct: 141010 tgtcggg---gtctccccgtggctccagctcttgactgaatccacagaggatgcgtcgtc 140954

                  
Query: 523    gtcc 526
              ||||
Sbjct: 140953 gtcc 140950



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                          
Query: 558    tcgttctttcactgacgcctgacgcatcaatgcccgcatggaggaaaatctcaacatatg 617
              |||||||||| |||| | |||||||||| || || ||||||||||| |||||  ||| ||
Sbjct: 140792 tcgttctttcgctgatgtctgacgcatcgatacctgcatggaggaagatctcggcatctg 140733

                                          
Query: 618    agattctgaaagaagtccccgggctgcc 645
               |||  |||| || || |||||||||||
Sbjct: 140732 ggatcttgaaggatgttcccgggctgcc 140705

>gb|AC093955.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1240_E09, complete sequence
          Length = 118742

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 103/124 (83%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                         
Query: 403   tgccaaggttcgcttgttgccgaatagggagctcaccttggagtacctctgcctcagcgg 462
             ||||| ||| |||||||||  ||| |||||||||| | |||||||| |||||||||||||
Sbjct: 12292 tgccatggtccgcttgttgttgaacagggagctcatcctggagtacttctgcctcagcgg 12233

                                                                         
Query: 463   tgtcggggtagtctcgacatggctccatctcttgacggagtccaccgaggaggtgtcatc 522
             |||||||   |||||  | |||||||| |||||||| || ||||| ||||| | ||| ||
Sbjct: 12232 tgtcggg---gtctccccgtggctccagctcttgactgaatccacagaggatgcgtcgtc 12176

                 
Query: 523   gtcc 526
             ||||
Sbjct: 12175 gtcc 12172



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                         
Query: 558   tcgttctttcactgacgcctgacgcatcaatgcccgcatggaggaaaatctcaacatatg 617
             |||||||||| |||| | |||||||||| || || ||||||||||| |||||  ||| ||
Sbjct: 12014 tcgttctttcgctgatgtctgacgcatcgatacctgcatggaggaagatctcggcatctg 11955

                                         
Query: 618   agattctgaaagaagtccccgggctgcc 645
              |||  |||| || || |||||||||||
Sbjct: 11954 ggatcttgaaggatgttcccgggctgcc 11927

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 103/124 (83%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                            
Query: 403      tgccaaggttcgcttgttgccgaatagggagctcaccttggagtacctctgcctcagcgg 462
                ||||| ||| |||||||||  ||| |||||||||| | |||||||| |||||||||||||
Sbjct: 13178293 tgccatggtccgcttgttgttgaacagggagctcatcctggagtacttctgcctcagcgg 13178234

                                                                            
Query: 463      tgtcggggtagtctcgacatggctccatctcttgacggagtccaccgaggaggtgtcatc 522
                |||||||   |||||  | |||||||| |||||||| || ||||| ||||| | ||| ||
Sbjct: 13178233 tgtcggg---gtctccccgtggctccagctcttgactgaatccacagaggatgcgtcgtc 13178177

                    
Query: 523      gtcc 526
                ||||
Sbjct: 13178176 gtcc 13178173



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                            
Query: 558      tcgttctttcactgacgcctgacgcatcaatgcccgcatggaggaaaatctcaacatatg 617
                |||||||||| |||| | |||||||||| || || ||||||||||| |||||  ||| ||
Sbjct: 13178015 tcgttctttcgctgatgtctgacgcatcgatacctgcatggaggaagatctcggcatctg 13177956

                                            
Query: 618      agattctgaaagaagtccccgggctgcc 645
                 |||  |||| || || |||||||||||
Sbjct: 13177955 ggatcttgaaggatgttcccgggctgcc 13177928

>dbj|AK060760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-H12, full
           insert sequence
          Length = 1447

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 103/124 (83%), Gaps = 3/124 (2%)
 Strand = Plus / Minus

                                                                       
Query: 403 tgccaaggttcgcttgttgccgaatagggagctcaccttggagtacctctgcctcagcgg 462
           ||||| ||| |||||||||  ||| |||||||||| | |||||||| |||||||||||||
Sbjct: 891 tgccatggtccgcttgttgttgaacagggagctcatcctggagtacttctgcctcagcgg 832

                                                                       
Query: 463 tgtcggggtagtctcgacatggctccatctcttgacggagtccaccgaggaggtgtcatc 522
           |||||||   |||||  | |||||||| |||||||| || ||||| ||||| | ||| ||
Sbjct: 831 tgtcggg---gtctccccgtggctccagctcttgactgaatccacagaggatgcgtcgtc 775

               
Query: 523 gtcc 526
           ||||
Sbjct: 774 gtcc 771



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                       
Query: 558 tcgttctttcactgacgcctgacgcatcaatgcccgcatggaggaaaatctcaacatatg 617
           |||||||||| |||| | |||||||||| || || ||||||||||| |||||  ||| ||
Sbjct: 613 tcgttctttcgctgatgtctgacgcatcgatacctgcatggaggaagatctcggcatctg 554

                                       
Query: 618 agattctgaaagaagtccccgggctgcc 645
            |||  |||| || || |||||||||||
Sbjct: 553 ggatcttgaaggatgttcccgggctgcc 526

>dbj|AK066758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074O20, full
            insert sequence
          Length = 2403

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcgttctttcactgacgcctgacgcatcaatgcccgcatggaggaaaatctcaacatatg 617
            |||||||||| |||| | |||||||||| || || ||||||||||| |||||  ||| ||
Sbjct: 1640 tcgttctttcgctgatgtctgacgcatcgatacctgcatggaggaagatctcggcatctg 1581

                                        
Query: 618  agattctgaaagaagtccccgggctgcc 645
             |||  |||| || || |||||||||||
Sbjct: 1580 ggatcttgaaggatgttcccgggctgcc 1553

>gb|AC084655.1|CBRG46I19 Caenorhabditis briggsae cosmid G46I19, complete sequence
          Length = 41381

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 544   ggtcgttctcgttctcgttctt 565
             ||||||||||||||||||||||
Sbjct: 26867 ggtcgttctcgttctcgttctt 26888

>emb|Y11022.1|BPCHALSYN B.pendula Roth mRNA for chalcone synthase
          Length = 1522

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 479 acatggctccatctcttgacg 499
           |||||||||||||||||||||
Sbjct: 363 acatggctccatctcttgacg 383

>ref|XM_585931.2| PREDICTED: Bos taurus similar to CG2747-PB, isoform B (LOC509049),
           partial mRNA
          Length = 1764

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 ttcttaggtgtgtgcctgat 252
           ||||||||||||||||||||
Sbjct: 35  ttcttaggtgtgtgcctgat 54

>ref|XM_751294.1| Ustilago maydis 521 hypothetical protein (UM00240.1) partial mRNA
          Length = 3099

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 319 cgacgacgaagaccatgacg 338
           ||||||||||||||||||||
Sbjct: 852 cgacgacgaagaccatgacg 871

>gb|AC139296.4| Mus musculus BAC clone RP24-131C5 from chromosome 18, complete sequence
          Length = 165703

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    taatttttgtagacatattt 67
             ||||||||||||||||||||
Sbjct: 12365 taatttttgtagacatattt 12346

>gb|AC122051.2| Mus musculus BAC clone RP24-459B17 from 18, complete sequence
          Length = 177747

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     taatttttgtagacatattt 67
              ||||||||||||||||||||
Sbjct: 165082 taatttttgtagacatattt 165063

>gb|AY318832.1| Gorilla gorilla AluYe5AH8 preintegration site
          Length = 501

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 cagctgccgacctcatcttc 391
           ||||||||||||||||||||
Sbjct: 53  cagctgccgacctcatcttc 72

>gb|AY318829.1| Homo sapiens AluYe5AH8 preintegration site
          Length = 812

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 cagctgccgacctcatcttc 391
           ||||||||||||||||||||
Sbjct: 53  cagctgccgacctcatcttc 72

>ref|XM_722204.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY06618)
            partial mRNA
          Length = 2454

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 546  tcgttctcgttctcgttctt 565
            ||||||||||||||||||||
Sbjct: 1404 tcgttctcgttctcgttctt 1385

>gb|AC003080.1| Homo sapiens BAC clone GS1-368F15 from 7, complete sequence
          Length = 179531

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    ttagttatctcagccttatc 85
             ||||||||||||||||||||
Sbjct: 61448 ttagttatctcagccttatc 61467

>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence
          Length = 270695

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   ccttggagtacctctgcctc 457
             ||||||||||||||||||||
Sbjct: 30077 ccttggagtacctctgcctc 30096

>emb|AL139812.11| Human DNA sequence from clone RP1-19N1 on chromosome Xq21.33-22.3
             Contains the gene for a novel protein similar to
             chondroitin sulfate GalNAcT-2 (GALNACT-2), complete
             sequence
          Length = 144242

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    ttgtagacatatttagttatctca 77
             ||||| ||||||||||||||||||
Sbjct: 19890 ttgtaaacatatttagttatctca 19867

>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    cgaccgctgccccgaggttg 167
              ||||||||||||||||||||
Sbjct: 820964 cgaccgctgccccgaggttg 820945

>emb|AL034560.3|PFMAL3P8 Plasmodium falciparum MAL3P8, complete sequence
          Length = 108908

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 319   cgacgacgaagaccatgacgccga 342
             ||||||||||||| ||||||||||
Sbjct: 35932 cgacgacgaagacgatgacgccga 35955

>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence
          Length = 205925

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   cagctgccgacctcatcttc 391
             ||||||||||||||||||||
Sbjct: 89600 cagctgccgacctcatcttc 89581

>gb|AC117384.5| Homo sapiens 3 BAC RP11-114I16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164598

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     tcaaatttaaactgcaccat 107
              ||||||||||||||||||||
Sbjct: 161554 tcaaatttaaactgcaccat 161535

>gb|AC026330.12| Homo sapiens 3 BAC RP11-414D23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188205

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 613    atatgagattctgaaagaag 632
              ||||||||||||||||||||
Sbjct: 152234 atatgagattctgaaagaag 152253

>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome
          Length = 1010023

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    cattgcattagtaatttttg 56
             ||||||||||||||||||||
Sbjct: 98273 cattgcattagtaatttttg 98254

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 546      tcgttctcgttctcgttctttcac 569
                |||||||||||||||||| |||||
Sbjct: 14439672 tcgttctcgttctcgttcattcac 14439695

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 546      tcgttctcgttctcgttctt 565
                ||||||||||||||||||||
Sbjct: 17683178 tcgttctcgttctcgttctt 17683197

>gb|AC009211.5|AC009211 Drosophila melanogaster, chromosome 3R, region 87D11-87E3, BAC clone
              BACR48D15, complete sequence
          Length = 184272

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    gtcgttctcgttctcgttct 564
              ||||||||||||||||||||
Sbjct: 115926 gtcgttctcgttctcgttct 115945

>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0094H06
          Length = 147245

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 546   tcgttctcgttctcgttctt 565
             ||||||||||||||||||||
Sbjct: 64713 tcgttctcgttctcgttctt 64732

>emb|Z98746.1|HS334P19 Human DNA sequence from clone RP3-334P19 on chromosome Xq22, complete
             sequence
          Length = 30281

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 54    ttgtagacatatttagttatctca 77
             ||||| ||||||||||||||||||
Sbjct: 27545 ttgtaaacatatttagttatctca 27522

>gb|AE003698.3| Drosophila melanogaster chromosome 3R, section 36 of 118 of the complete
              sequence
          Length = 247955

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 545    gtcgttctcgttctcgttct 564
              ||||||||||||||||||||
Sbjct: 234071 gtcgttctcgttctcgttct 234090

>gb|AC140947.1| Gallus gallus BAC clone TAM33-40B24 from chromosome ul, complete
             sequence
          Length = 229639

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   atctcaacatatgagattct 624
             ||||||||||||||||||||
Sbjct: 53905 atctcaacatatgagattct 53924


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,429
Number of Sequences: 3902068
Number of extensions: 5378429
Number of successful extensions: 85629
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85401
Number of HSP's gapped (non-prelim): 228
length of query: 672
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 649
effective length of database: 17,143,297,704
effective search space: 11126000209896
effective search space used: 11126000209896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)