Clone Information

BLAST Search Result

Clone Name	rbasd14i01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483184.1\| Oryza sativa (japonica cultivar-group), mRNA	335	1e-88
2	ref\|XM_483185.1\| Oryza sativa (japonica cultivar-group), mRNA	335	1e-88
3	dbj\|AK065120.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	1e-88
4	dbj\|AK064832.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	335	1e-88
5	gb\|AY772416.1\| Oryza sativa (japonica cultivar-group) peroxisoma...	327	2e-86
6	gb\|AY772415.1\| Oryza sativa (japonica cultivar-group) peroxisoma...	327	2e-86
7	gb\|BT018851.1\| Zea mays clone EL01N0555H04.d mRNA sequence	287	2e-74
8	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
9	dbj\|AP003873.2\| Oryza sativa (japonica cultivar-group) genomic D...	119	1e-23
10	gb\|AF056282.1\|AF056282 Nicotiana tabacum clone 165 peroxisomal t...	117	4e-23
11	gb\|AY111328.1\| Zea mays CL29436_1 mRNA sequence	115	2e-22
12	gb\|AF056283.1\|AF056283 Nicotiana tabacum clone 354 peroxisomal t...	101	3e-18
13	gb\|AF053104.1\|AF053104 Nicotiana tabacum peroxisomal targeting s...	101	3e-18
14	gb\|AF068690.1\|AF068690 Citrullus lanatus peroxisomal targeting s...	82	2e-12
15	ref\|NM_125012.3\| Arabidopsis thaliana PEX5; peroxisome targeting...	58	4e-05
16	gb\|AY096679.1\| Arabidopsis thaliana putative peroxisomal targeti...	58	4e-05
17	gb\|AY056299.1\| Arabidopsis thaliana putative peroxisomal targeti...	58	4e-05
18	gb\|AF074843.1\|AF074843 Arabidopsis thaliana peroxisomal targetin...	58	4e-05
19	gb\|AC147959.18\| Medicago truncatula clone mth2-11c16, complete s...	54	6e-04
20	gb\|AC093870.3\| Homo sapiens BAC clone RP11-598G2 from 4, complet...	50	0.009
21	gb\|DQ288941.1\| Brassica napus peroxisomal import receptor PTS1 m...	50	0.009
22	dbj\|AB009049.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	46	0.14
23	gb\|AC141879.5\| Mus musculus BAC clone RP24-249I4 from chromosome...	42	2.1
24	gb\|AC156994.8\| Mus musculus chromosome 5, clone RP23-312N12, com...	42	2.1
25	ref\|NM_062819.2\| Caenorhabditis elegans Fem-3 mRNA Binding Facto...	42	2.1
26	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
27	gb\|AC092155.3\| Homo sapiens BAC clone RP11-312H10 from 2, comple...	42	2.1
28	gb\|U23176.2\| Caenorhabditis elegans cosmid F21H12, complete sequ...	42	2.1
29	dbj\|AP004095.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
30	dbj\|AP004057.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
31	gb\|AC018365.49\| Mus musculus strain 129/SvJ clone mgs1-461b11 ma...	42	2.1
32	gb\|AC125079.3\| Mus musculus chromosome 16 clone RP23-480M17, com...	40	8.3
33	gb\|AC141329.4\| Mus musculus BAC clone RP23-63G7 from chromosome ...	40	8.3
34	gb\|AC122517.2\| Mus musculus BAC clone RP24-459G24 from chromosom...	40	8.3
35	ref\|XM_847882.1\| PREDICTED: Canis familiaris similar to Actin-bi...	40	8.3
36	ref\|XM_673223.1\| Plasmodium berghei strain ANKA guanylyl cyclase...	40	8.3
37	gb\|AC095563.7\| Rattus norvegicus 9 BAC CH230-7G11 (Children's Ho...	40	8.3
38	emb\|AL732586.6\| Human DNA sequence from clone RP11-549H3 on chro...	40	8.3
39	gb\|AC104796.4\| Homo sapiens BAC clone RP11-318E19 from 4, comple...	40	8.3
40	gb\|AC078784.24\| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cance...	40	8.3
41	dbj\|AK154777.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	8.3
42	gb\|AC152502.5\| Mus musculus BAC clone RP23-415D12 from chromosom...	40	8.3
43	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
44	gb\|AC084321.37\| Mus musculus strain C57BL/6J chromosome 7 clone ...	40	8.3
45	dbj\|AP005567.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.3
46	gb\|AC153862.8\| Mus musculus 10 BAC RP23-353K11 (Roswell Park Can...	40	8.3

>ref|XM_483184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2693

 Score =  335 bits (169), Expect = 1e-88
 Identities = 289/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2328 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2269

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2268 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2209

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2208 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2149

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2148 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2089

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 2088 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 2029

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 2028 tttgcttgggtcgcacctagcttattcca 2000

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>ref|XM_483185.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2526

 Score =  335 bits (169), Expect = 1e-88
 Identities = 289/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2161 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2102

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2101 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2042

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2041 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1982

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1981 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1922

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 1921 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 1862

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 1861 tttgcttgggtcgcacctagcttattcca 1833

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>dbj|AK065120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O15, full
            insert sequence
          Length = 2693

 Score =  335 bits (169), Expect = 1e-88
 Identities = 289/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2328 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2269

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2268 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2209

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2208 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2149

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2148 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2089

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 2088 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 2029

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 2028 tttgcttgggtcgcacctagcttattcca 2000

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>dbj|AK064832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F17, full
            insert sequence
          Length = 2526

 Score =  335 bits (169), Expect = 1e-88
 Identities = 289/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2161 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2102

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2101 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2042

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2041 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1982

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1981 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1922

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 1921 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 1862

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 1861 tttgcttgggtcgcacctagcttattcca 1833

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>gb|AY772416.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor short form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2527

 Score =  327 bits (165), Expect = 2e-86
 Identities = 288/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2143 aatgcctaaaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2084

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2083 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2024

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2023 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 1964

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 1963 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 1904

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 1903 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 1844

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 1843 tttgcttgggtcgcacctagcttattcca 1815

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>gb|AY772415.1| Oryza sativa (japonica cultivar-group) peroxisomal targeting signal 1
            receptor long form (PEX5) mRNA, complete cds,
            alternatively spliced
          Length = 2698

 Score =  327 bits (165), Expect = 2e-86
 Identities = 288/329 (87%)
 Strand = Plus / Minus

                                                                        
Query: 284  aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
            |||| ||| |||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 2314 aatgcctaaaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 2255

                                                                        
Query: 344  gaatcacatgcagcaatcatatcactgcgtgaagcattaccaagtgaaattctcaagtac 403
            |||||||||||||| ||||| |||   |||||||| |||| ||| ||||| | |||||||
Sbjct: 2254 gaatcacatgcagcgatcatgtcagctcgtgaagcgttactaagagaaatccgcaagtac 2195

                                                                        
Query: 404  tgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccgaatggaa 463
            |||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||||| || 
Sbjct: 2194 tgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcgaatagag 2135

                                                                        
Query: 464  tcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacggacgtag 523
            ||||| ||||  |||||||||||||||||||| |||||||||||||||||||| || || 
Sbjct: 2134 tcttcatacaatccctggttggcatagctaatccccatattagcccatgcacgcacataa 2075

                                                                        
Query: 524  ttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctggatgctg 583
            |||||||| || || |||||||| || || |||| ||  |||||||||||||||||||||
Sbjct: 2074 ttgggctttaagtccagagcctgttgataggccaatattgcatcagcactctggatgctg 2015

                                         
Query: 584  tttgcttgggtcgcaccgagcttgttcca 612
            ||||||||||||||||| ||||| |||||
Sbjct: 2014 tttgcttgggtcgcacctagcttattcca 1986

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>gb|BT018851.1| Zea mays clone EL01N0555H04.d mRNA sequence
          Length = 2135

 Score =  287 bits (145), Expect = 2e-74
 Identities = 271/313 (86%)
 Strand = Plus / Minus

                                                                        
Query: 300  ggactcagaggggaaactctttctgaaggacgtcaaggttgcgggaatcacatgcagcaa 359
            |||||||||| |||||||||||||||||  |||| ||||||||||  || ||||| ||||
Sbjct: 1805 ggactcagagaggaaactctttctgaagagcgtcgaggttgcgggcgtcgcatgcggcaa 1746

                                                                        
Query: 360  tcatatcactgcgtgaagcattaccaagtgaaattctcaagtactgccaggcattgtctg 419
            |||| |||   | |||||| || ||||| ||||| |||||||||||||| || ||||| |
Sbjct: 1745 tcatgtcagctcttgaagcgttgccaagagaaatcctcaagtactgccaagcgttgtcag 1686

                                                                        
Query: 420  ctttcggattcatggaaaccgcccttacatagtaccgaatggaatcttcgtacagaccct 479
            |||| || ||||| | ||| |||||||||||||| ||||||||||| || ||||||||||
Sbjct: 1685 cttttgggttcattgtaactgcccttacatagtatcgaatggaatcctcatacagaccct 1626

                                                                        
Query: 480  ggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaatcta 539
            ||||||||||||| |||||||| || ||||||||||| ||||||||||| ||||| ||||
Sbjct: 1625 ggttggcatagctgattcccatgttcgcccatgcacgcacgtagttgggtttcaagtcta 1566

                                                                        
Query: 540  gagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtcgcac 599
            | |||||||| || |||| ||  |||||||||||||||||||||||||||||||| ||||
Sbjct: 1565 gtgcctgctgatacgccaatattgcatcagcactctggatgctgtttgcttgggttgcac 1506

                         
Query: 600  cgagcttgttcca 612
            | |||||||||||
Sbjct: 1505 caagcttgttcca 1493

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                            
Query: 284      aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
                |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 24686878 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 24686819

                                    
Query: 344      gaatcacatgcagcaatcat 363
                |||||||||||||| |||||
Sbjct: 24686818 gaatcacatgcagcgatcat 24686799



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 477      cctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaat 536
                ||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |
Sbjct: 24685951 cctggttggcatagctaatccccatattagcccatgcacgcacataattgggctttaagt 24685892

                          
Query: 537      ctagagcctg 546
                | ||||||||
Sbjct: 24685891 ccagagcctg 24685882



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                                  
Query: 563      gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttcca 612
                |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 24684958 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattcca 24684909



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                            
Query: 397      caagtactgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccg 456
                ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||
Sbjct: 24686511 caagtactgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcg 24686452

                                 
Query: 457      aatggaatcttcgtaca 473
                ||| || ||||| ||||
Sbjct: 24686451 aatagagtcttcataca 24686435

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>dbj|AP003873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_A06
          Length = 92836

 Score =  119 bits (60), Expect = 1e-23
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                         
Query: 284   aatgtctagaatgtttggactcagaggggaaactctttctgaaggacgtcaaggttgcgg 343
             |||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||| 
Sbjct: 59182 aatgcctagaatgtttggactcacaggggaaactctttctgaagaacgtcaaggttgcgt 59123

                                 
Query: 344   gaatcacatgcagcaatcat 363
             |||||||||||||| |||||
Sbjct: 59122 gaatcacatgcagcgatcat 59103



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                         
Query: 477   cctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaat 536
             ||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |
Sbjct: 58255 cctggttggcatagctaatccccatattagcccatgcacgcacataattgggctttaagt 58196

                       
Query: 537   ctagagcctg 546
             | ||||||||
Sbjct: 58195 ccagagcctg 58186



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 48/50 (96%)
 Strand = Plus / Minus

                                                               
Query: 563   gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttcca 612
             |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 57262 gcatcagcactctggatgctgtttgcttgggtcgcacctagcttattcca 57213



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                         
Query: 397   caagtactgccaggcattgtctgctttcggattcatggaaaccgcccttacatagtaccg 456
             ||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||| ||
Sbjct: 58815 caagtactgccaggcattgtcagcttttggattcatagcaaccgcccgtacatagtatcg 58756

                              
Query: 457   aatggaatcttcgtaca 473
             ||| || ||||| ||||
Sbjct: 58755 aatagagtcttcataca 58739

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>gb|AF056282.1|AF056282 Nicotiana tabacum clone 165 peroxisomal targeting sequence 1 receptor
            (PEX5) mRNA, partial cds
          Length = 2078

 Score =  117 bits (59), Expect = 4e-23
 Identities = 131/155 (84%)
 Strand = Plus / Minus

                                                                        
Query: 458  atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 517
            |||||||| || |||| ||||||||||||||| || |||||||| || ||||||||||| 
Sbjct: 1505 atggaatcctcatacataccctggttggcataactgattcccatgtttgcccatgcacgt 1446

                                                                        
Query: 518  acgtagttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctgg 577
            || ||||| ||||| |||||||| |||||||| || |||| ||  |||||||||||||| 
Sbjct: 1445 acatagttaggctttaaatctagcgcctgctgataagccaatattgcatcagcactctga 1386

                                               
Query: 578  atgctgtttgcttgggtcgcaccgagcttgttcca 612
            | |||||| ||||| || ||||| ||||| |||||
Sbjct: 1385 acgctgttagcttgtgttgcaccaagcttattcca 1351

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>gb|AY111328.1| Zea mays CL29436_1 mRNA sequence
          Length = 700

 Score =  115 bits (58), Expect = 2e-22
 Identities = 136/162 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 gctttcggattcatggaaaccgcccttacatagtaccgaatggaatcttcgtacagaccc 478
           ||||| || ||||| | ||| |||||||||||||| ||||||||||| || ||||  |||
Sbjct: 539 gcttttgggttcattgcaactgcccttacatagtatcgaatggaatcctcatacaacccc 598

                                                                       
Query: 479 tggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaatct 538
           |||||||||||| |     ||||||| ||||||||||| ||||||||||| ||||| || 
Sbjct: 599 tggttggcatagattcccaccatattcgcccatgcacgcacgtagttgggtttcaagtcc 658

                                                     
Query: 539 agagcctgctggtatgccagtacggcatcagcactctggatg 580
           ||||||||||| || |||| ||  ||||||||||||||||||
Sbjct: 659 agagcctgctgatacgccaatattgcatcagcactctggatg 700



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 311 ggaaactctttctgaaggacgtcaaggttgcggg 344
           |||||||||||||||||  |||||||||||||||
Sbjct: 431 ggaaactctttctgaagagcgtcaaggttgcggg 464

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>gb|AF056283.1|AF056283 Nicotiana tabacum clone 354 peroxisomal targeting sequence 1
           receptor (PEX5) mRNA, partial cds
          Length = 1474

 Score =  101 bits (51), Expect = 3e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                       
Query: 458 atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 517
           |||||||| || |||| |||||||||||| || || |||||||| || ||||||||||| 
Sbjct: 845 atggaatcctcatacataccctggttggcgtaactgattcccatgtttgcccatgcacgt 786

                                                                       
Query: 518 acgtagttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctgg 577
           || ||||| ||||| |||||||| |||||||| || |||| ||  |||||||||||||| 
Sbjct: 785 acatagttaggctttaaatctagcgcctgctgataagccaatattgcatcagcactctga 726

                                              
Query: 578 atgctgtttgcttgggtcgcaccgagcttgttcca 612
           |  ||||| ||||| || ||||| ||||| |||||
Sbjct: 725 acactgttagcttgtgttgcaccaagcttattcca 691

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>gb|AF053104.1|AF053104 Nicotiana tabacum peroxisomal targeting signal 1 receptor (PEX5)
            mRNA, complete cds
          Length = 2823

 Score =  101 bits (51), Expect = 3e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 458  atggaatcttcgtacagaccctggttggcatagctaattcccatattagcccatgcacgg 517
            |||||||| || |||| |||||||||||| || || |||||||| || ||||||||||| 
Sbjct: 2213 atggaatcctcatacataccctggttggcgtaactgattcccatgtttgcccatgcacgt 2154

                                                                        
Query: 518  acgtagttgggcttcaaatctagagcctgctggtatgccagtacggcatcagcactctgg 577
            || ||||| ||||| |||||||| |||||||| || |||| ||  |||||||||||||| 
Sbjct: 2153 acatagttaggctttaaatctagcgcctgctgataagccaatattgcatcagcactctga 2094

                                               
Query: 578  atgctgtttgcttgggtcgcaccgagcttgttcca 612
            |  ||||| ||||| || ||||| ||||| |||||
Sbjct: 2093 acactgttagcttgtgttgcaccaagcttattcca 2059

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>gb|AF068690.1|AF068690 Citrullus lanatus peroxisomal targeting signal-1 receptor (PEX5)
            mRNA, complete cds
          Length = 2503

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            ||||| || ||||| || ||||||||||| ||||| ||||| ||||| || |||||||||
Sbjct: 1831 ccctgattagcataactgattcccatattggcccaggcacgtacgtaattaggcttcaaa 1772

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            || || ||||| || || || | ||  ||||||||||| || |||||||| ||||| || 
Sbjct: 1771 tcaagtgcctgttgataagctaatatagcatcagcactttgaatgctgttagcttgtgta 1712

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| |||||||||||
Sbjct: 1711 gcacctagcttgttcca 1695

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>ref|NM_125012.3| Arabidopsis thaliana PEX5; peroxisome targeting signal-1 binding
            AT5G56290 (PEX5) mRNA, complete cds
          Length = 2460

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            |||||||| || || || |||||||| || ||||| ||||| || || || || || |||
Sbjct: 2141 ccctggtttgcgtaactgattcccatgtttgcccaagcacgaacataatttggttttaaa 2082

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            ||||||||||| || || ||   || |||||||||||||||||  ||||| ||||| || 
Sbjct: 2081 tctagagcctgttgataagcagatatggcatcagcactctggacactgttggcttgcgtt 2022

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| ||||| |||||
Sbjct: 2021 gcacctagcttattcca 2005

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>gb|AY096679.1| Arabidopsis thaliana putative peroxisomal targeting signal type 1
            receptor protein (At5g56290) mRNA, complete cds
          Length = 2218

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            |||||||| || || || |||||||| || ||||| ||||| || || || || || |||
Sbjct: 2015 ccctggtttgcgtaactgattcccatgtttgcccaagcacgaacataatttggttttaaa 1956

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            ||||||||||| || || ||   || |||||||||||||||||  ||||| ||||| || 
Sbjct: 1955 tctagagcctgttgataagcagatatggcatcagcactctggacactgttggcttgcgtt 1896

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| ||||| |||||
Sbjct: 1895 gcacctagcttattcca 1879

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>gb|AY056299.1| Arabidopsis thaliana putative peroxisomal targeting signal type 1
            receptor protein (At5g56290) mRNA, complete cds
          Length = 2470

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            |||||||| || || || |||||||| || ||||| ||||| || || || || || |||
Sbjct: 2134 ccctggtttgcgtaactgattcccatgtttgcccaagcacgaacataatttggttttaaa 2075

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            ||||||||||| || || ||   || |||||||||||||||||  ||||| ||||| || 
Sbjct: 2074 tctagagcctgttgataagcagatatggcatcagcactctggacactgttggcttgcgtt 2015

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| ||||| |||||
Sbjct: 2014 gcacctagcttattcca 1998

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>gb|AF074843.1|AF074843 Arabidopsis thaliana peroxisomal targeting signal type 1 receptor
            (PEX5) mRNA, complete cds
          Length = 2316

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 110/137 (80%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            |||||||| || || || |||||||| || ||||| ||||| || || || || || |||
Sbjct: 2144 ccctggtttgcgtaactgattcccatgtttgcccaagcacgaacataatttggttttaaa 2085

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            ||||||||||| || || ||   || |||||||||||||||||  ||||| ||||| || 
Sbjct: 2084 tctagagcctgttgataagcagatatggcatcagcactctggacactgttggcttgcgtt 2025

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| ||||| |||||
Sbjct: 2024 gcacctagcttattcca 2008

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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 388    tgaaattctcaagtactgccaggcattgtctgctttcggattcatgg 434
              |||||||||||| || ||||| ||||| |||||||| ||||||||||
Sbjct: 125017 tgaaattctcaaatattgccatgcattctctgcttttggattcatgg 125063



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 563    gcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttcca 612
              ||||||||||| || |  ||||||||||| || ||||| |||||||||||
Sbjct: 128514 gcatcagcactttgaacactgtttgcttgtgttgcaccaagcttgttcca 128563

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>gb|AC093870.3| Homo sapiens BAC clone RP11-598G2 from 4, complete sequence
          Length = 193650

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 570    cactctggatgctgtttgcttgggt 594
              |||||||||||||||||||||||||
Sbjct: 176941 cactctggatgctgtttgcttgggt 176965

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>gb|DQ288941.1| Brassica napus peroxisomal import receptor PTS1 mRNA, complete cds
          Length = 2424

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 109/137 (79%)
 Strand = Plus / Minus

                                                                        
Query: 476  ccctggttggcatagctaattcccatattagcccatgcacggacgtagttgggcttcaaa 535
            |||||||| || || || || ||||| || ||||| ||||| ||||| || || || |||
Sbjct: 2024 ccctggtttgcgtaactgatccccatgttcgcccaagcacgaacgtaattaggttttaaa 1965

                                                                        
Query: 536  tctagagcctgctggtatgccagtacggcatcagcactctggatgctgtttgcttgggtc 595
            || |||||||| || || ||   || |||||||||||||||||  ||||| ||||| || 
Sbjct: 1964 tccagagcctgttgataagcagatatggcatcagcactctggacactgttggcttgtgtt 1905

                             
Query: 596  gcaccgagcttgttcca 612
            ||||| ||||| |||||
Sbjct: 1904 gcaccaagcttattcca 1888

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>dbj|AB009049.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCD7
          Length = 87685

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 562  ggcatcagcactctggatgctgtttgcttgggtcgcaccgagcttgttcca 612
            |||||||||||||||||  ||||| ||||| || ||||| ||||| |||||
Sbjct: 4559 ggcatcagcactctggacactgttggcttgcgttgcacctagcttattcca 4509

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>gb|AC141879.5| Mus musculus BAC clone RP24-249I4 from chromosome 16, complete sequence
          Length = 148167

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   caatctgtgtttgtttctcct 204
             |||||||||||||||||||||
Sbjct: 61334 caatctgtgtttgtttctcct 61314

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>gb|AC156994.8| Mus musculus chromosome 5, clone RP23-312N12, complete sequence
          Length = 166581

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   ttgtttctccttcccattcca 214
             |||||||||||||||||||||
Sbjct: 75425 ttgtttctccttcccattcca 75405

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>ref|NM_062819.2| Caenorhabditis elegans Fem-3 mRNA Binding Factor family member
            (fbf-2) (fbf-2) mRNA, complete cds
          Length = 2272

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 148  acagtaaacagaaaaacacaataacacaa 176
            |||||||||||||| | ||||||||||||
Sbjct: 2218 acagtaaacagaaagaaacaataacacaa 2190

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 156      cagaaaaacacaataacacaa 176
                |||||||||||||||||||||
Sbjct: 33387687 cagaaaaacacaataacacaa 33387667

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>gb|AC092155.3| Homo sapiens BAC clone RP11-312H10 from 2, complete sequence
          Length = 153304

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   tctgtgtttgtttctccttcc 207
             |||||||||||||||||||||
Sbjct: 42444 tctgtgtttgtttctccttcc 42464

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>gb|U23176.2| Caenorhabditis elegans cosmid F21H12, complete sequence
          Length = 21805

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 148  acagtaaacagaaaaacacaataacacaa 176
            |||||||||||||| | ||||||||||||
Sbjct: 6678 acagtaaacagaaagaaacaataacacaa 6706

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>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 156    cagaaaaacacaataacacaa 176
              |||||||||||||||||||||
Sbjct: 128437 cagaaaaacacaataacacaa 128417

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>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1316_E06
          Length = 110197

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 156   cagaaaaacacaataacacaa 176
             |||||||||||||||||||||
Sbjct: 18306 cagaaaaacacaataacacaa 18286

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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 194    ttgtttctccttcccattcca 214
              |||||||||||||||||||||
Sbjct: 108166 ttgtttctccttcccattcca 108186

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>gb|AC125079.3| Mus musculus chromosome 16 clone RP23-480M17, complete sequence
          Length = 174536

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tctgccatgggattttacat 78
             ||||||||||||||||||||
Sbjct: 75474 tctgccatgggattttacat 75493

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>gb|AC141329.4| Mus musculus BAC clone RP23-63G7 from chromosome 7, complete sequence
          Length = 153106

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    aaaaacacaataacacaatg 178
              ||||||||||||||||||||
Sbjct: 108018 aaaaacacaataacacaatg 108037

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>gb|AC122517.2| Mus musculus BAC clone RP24-459G24 from chromosome 7, complete sequence
          Length = 186032

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    aaaaacacaataacacaatg 178
              ||||||||||||||||||||
Sbjct: 179777 aaaaacacaataacacaatg 179758

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>ref|XM_847882.1| PREDICTED: Canis familiaris similar to Actin-binding LIM protein 2
            (Actin-binding LIM protein family member 2) (abLIM2)
            (LOC610389), mRNA
          Length = 3487

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   tgcaaccactgtttctgcca 65
            ||||||||||||||||||||
Sbjct: 2759 tgcaaccactgtttctgcca 2778

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>ref|XM_673223.1| Plasmodium berghei strain ANKA guanylyl cyclase (PB001219.00.0)
            partial mRNA
          Length = 5982

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 152  taaacagaaaaacacaataacaca 175
            |||||| |||||||||||||||||
Sbjct: 4299 taaacaaaaaaacacaataacaca 4322

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>gb|AC095563.7| Rattus norvegicus 9 BAC CH230-7G11 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 237247

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    gaaaaacacaataacacaat 177
              ||||||||||||||||||||
Sbjct: 130645 gaaaaacacaataacacaat 130664

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>emb|AL732586.6| Human DNA sequence from clone RP11-549H3 on chromosome X, complete
             sequence
          Length = 125933

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   aacagaaaaacacaataaca 173
             ||||||||||||||||||||
Sbjct: 12110 aacagaaaaacacaataaca 12091

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>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    acagaaaaacacaataacac 174
              ||||||||||||||||||||
Sbjct: 130901 acagaaaaacacaataacac 130920

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>gb|AC078784.24| Homo sapiens 3 BAC RP11-63L4 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 165413

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 380  ttaccaagtgaaattctcaa 399
            ||||||||||||||||||||
Sbjct: 8456 ttaccaagtgaaattctcaa 8437

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>dbj|AK154777.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630106H22
            product:unclassifiable, full insert sequence
          Length = 3351

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  tagcttacagtaaacagaaa 161
            ||||||||||||||||||||
Sbjct: 3319 tagcttacagtaaacagaaa 3300

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>gb|AC152502.5| Mus musculus BAC clone RP23-415D12 from chromosome 16, complete sequence
          Length = 180876

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     tctgccatgggattttacat 78
              ||||||||||||||||||||
Sbjct: 167347 tctgccatgggattttacat 167328

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 142      tagcttacagtaaacagaaa 161
                ||||||||||||||||||||
Sbjct: 20522809 tagcttacagtaaacagaaa 20522790

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>gb|AC084321.37| Mus musculus strain C57BL/6J chromosome 7 clone rp23-316h18, complete
             sequence
          Length = 176639

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aaaaacacaataacacaatg 178
             ||||||||||||||||||||
Sbjct: 96183 aaaaacacaataacacaatg 96164

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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1254_E07
          Length = 124028

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   tagcttacagtaaacagaaa 161
             ||||||||||||||||||||
Sbjct: 40456 tagcttacagtaaacagaaa 40437

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>gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 223830

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   tagcttacagtaaacagaaa 161
             ||||||||||||||||||||
Sbjct: 93186 tagcttacagtaaacagaaa 93205


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,562,095
Number of Sequences: 3902068
Number of extensions: 5562095
Number of successful extensions: 108709
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108556
Number of HSP's gapped (non-prelim): 148
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

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