ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14h19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463021.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.6 mRNA Length = 1020 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 713 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 654 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 653 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 594 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 593 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 534 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 533 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 474 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 473 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 414 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 413 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 354 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 353 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 294 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 293 cgacttcatgttgtactt 276
>gb|AY323130.1| Oryza sativa (japonica cultivar-group) ribosomal protein large subunit 13 mRNA, complete cds Length = 940 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 701 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 642 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 641 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 582 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 581 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 522 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 521 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 462 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 461 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 402 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 401 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 342 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 341 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 282 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 281 cgacttcatgttgtactt 264
>emb|AJ272394.1|OSA272394 Oryza sativa mRNA for putative cold-induced protein (cip1 gene) Length = 900 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 688 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 629 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 628 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 569 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 568 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 509 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 508 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 449 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 448 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 389 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| Sbjct: 388 gagtccctcaagtgaccggttcttgcggcggtggtccacggaaattccaatggttggagc 329 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 328 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 269 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 268 cgacttcatgttgtactt 251
>dbj|AK104895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-A02, full insert sequence Length = 906 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 722 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 663 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 662 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 603 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 602 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 543 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 542 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 483 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 482 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 423 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 422 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 363 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 362 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 303 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 302 cgacttcatgttgtactt 285
>dbj|AK104259.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G09, full insert sequence Length = 1047 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 719 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 660 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 659 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 600 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 599 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 540 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 539 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 480 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 479 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 420 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 419 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 360 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 359 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 300 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 299 cgacttcatgttgtactt 282
>dbj|AK070375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054I18, full insert sequence Length = 919 Score = 432 bits (218), Expect = e-118 Identities = 383/438 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 721 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 662 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 661 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 602 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 601 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 542 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 541 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 482 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 481 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 422 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 421 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 362 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 361 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 302 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 301 cgacttcatgttgtactt 284
>dbj|AB051074.1| Oryza sativa (japonica cultivar-group) bbc1l mRNA for BBC1-like protein, complete cds Length = 705 Score = 424 bits (214), Expect = e-115 Identities = 381/438 (86%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| | ||||||||| || || Sbjct: 495 tcacttcttctcttccttctctgcctcagcagccctcttctggsgggcaccaacatggcg 436 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 435 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 376 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 375 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 316 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || ||||||| |||||| ||||||||||| Sbjct: 315 gacctgggtggcagtggcaagttcctcggcagtggaatcacyagccttgaccttgcgagc 256 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||| |||||||| ||||| | |||| ||| Sbjct: 255 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctggacattagcctg 196 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 | ||||||||||| | ||| || |||||||||||||| ||||| ||||| || ||||| Sbjct: 195 gagtccctcaagtgagcggttcttgcggcggtgatccacggaaattccaatggttggagc 136 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 135 atacttcttggggatgcccgcagccttcagctcctcaagggtaaagcctctcccagccct 76 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 75 cgacttcatgttgtactt 58
>gb|AF487458.1| Triticum aestivum BBC1-like protein mRNA, complete cds Length = 867 Score = 422 bits (213), Expect = e-115 Identities = 406/469 (86%), Gaps = 1/469 (0%) Strand = Plus / Minus Query: 229 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 288 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 624 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 565 Query: 289 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctc 348 ||| |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| Sbjct: 564 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 505 Query: 349 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 408 ||| |||||||||| || ||| || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 504 ctctgtgaccttcacgacctcgactgagcgcttctcgccacgggcaatgggcatgtagtc 445 Query: 409 accctggacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaacctt 468 |||||||||||| ||||| ||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 444 accctggacctgtgtggcgttggcaagctcctccggagtagagtcaccagccttgacctt 385 Query: 469 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgtt 528 |||||||||||||||||||||||| ||||| |||||||| |||||||| | ||| || || Sbjct: 384 gcgagcacgccttgggaagataacaagcttggccttgtaggtcttgagccgctggatatt 325 Query: 529 agactgcataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagt 588 ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| || Sbjct: 324 ggactgcataccctcaagcgacctgttcttgcggcgatggtccacagaaatgccaatggt 265 Query: 589 aggagctagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctccc 648 ||||| |||||||| |||||||| || | ||| ||||||||||||||||| ||||| || Sbjct: 264 cggagcgagcttctttgggatgccagcggacttaagctcctcaagggtaaatcctctgcc 205 Query: 649 agcccttgccttcatgttgtactttccgagtctggcattgcacaatggg 697 |||||| ||||||||||||||| || || |||||||||||||||||||| Sbjct: 204 agccctggccttcatgttgtac-ttgcgggtctggcattgcacaatggg 157
>gb|AY109921.1| Zea mays CL187_21 mRNA sequence Length = 963 Score = 355 bits (179), Expect = 1e-94 Identities = 393/463 (84%), Gaps = 1/463 (0%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 |||||| ||||| |||||||||||||| || ||||||||| |||||||||||| || Sbjct: 656 tcacttgttttcatccttctctgcctcagccgccttcttctggcgggcaccaaggtgttt 597 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 || |||||||| ||| | || |||||||||||||||| |||| ||||||||| ||||| Sbjct: 596 cttgttcatccgctcaagacggagcttgccgtaggccgcaaacgacttcatctcatcagt 537 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 ||||||| | ||| || |||||||||||||||||||||||||||| ||||||||||| Sbjct: 536 aaccttcacaacctcgactgagcgcttctcaccacgagtaataggcatgtagtcaccctg 477 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||| ||||| || ||||| || || || || |||||||||| Sbjct: 476 gacctgggtggccgtggcaagctcctccggagtagagtcgccggcattggccttgcgagc 417 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 |||||||||||||||||||||||| |||||||||||||| || ||||| | || | ||| Sbjct: 416 acgccttgggaagataaccagcttggccttgtacgtcttaagcctctggacattggcctg 357 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 || ||||| || || |||| || |||||||||||||||||||||||||| || || || Sbjct: 356 cagtccctcgagagatttgttcttgcggcggtgatccacagaaatgccaatggttggggc 297 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 |||||||| || ||||| || | |||||||| |||||||||||| |||||||||||||| Sbjct: 296 aagcttctttggaatgccggcagccttcagctactcaagggtaaatcctctcccagccct 237 Query: 655 tgccttcatgttgtactttccgagtctggcattgcacaatggg 697 | ||||||||||||| || |||||||||||||||||||||| Sbjct: 236 cgacttcatgttgtac-ttgagagtctggcattgcacaatggg 195
>ref|NM_185433.2| Oryza sativa (japonica cultivar-group), mRNA Length = 906 Score = 337 bits (170), Expect = 3e-89 Identities = 371/438 (84%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 ||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| || Sbjct: 524 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagccttgaccttgcgggc 465 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 ||| ||||||||||| || ||||| |||||||| ||||| || ||||| | || | ||| Sbjct: 464 acgtcttgggaagatgacaagcttggccttgtaggtcttcagcctctggacattggcctg 405 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 || ||| |||||||| | ||| ||||||||||||||||| || |||||||| || || || Sbjct: 404 cagaccttcaagtgagcggttcttacggcggtgatccactgagatgccaatggttggggc 345 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 | |||||| ||||| || |||| ||||||||| |||||||| ||||| || |||||||| Sbjct: 344 aaacttcttggggatcccagctgccttcagctcttcaagggtgaagccccttccagccct 285 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 284 agacttcatgttgtactt 267
>dbj|AK070995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078L22, full insert sequence Length = 906 Score = 337 bits (170), Expect = 3e-89 Identities = 371/438 (84%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 704 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 645 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 644 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 585 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 584 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 525 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 ||||||||||||||||||||| |||||||| || || ||||||||||| |||||||| || Sbjct: 524 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagccttgaccttgcgggc 465 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgttagactg 534 ||| ||||||||||| || ||||| |||||||| ||||| || ||||| | || | ||| Sbjct: 464 acgtcttgggaagatgacaagcttggccttgtaggtcttcagcctctggacattggcctg 405 Query: 535 cataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagc 594 || ||| |||||||| | ||| ||||||||||||||||| || |||||||| || || || Sbjct: 404 cagaccttcaagtgagcggttcttacggcggtgatccactgagatgccaatggttggggc 345 Query: 595 tagcttcttcgggatgcccgctgtcttcagctcctcaagggtaaagcctctcccagccct 654 | |||||| ||||| || |||| ||||||||| |||||||| ||||| || |||||||| Sbjct: 344 aaacttcttggggatcccagctgccttcagctcttcaagggtgaagccccttccagccct 285 Query: 655 tgccttcatgttgtactt 672 | ||||||||||||||| Sbjct: 284 agacttcatgttgtactt 267
>gb|DQ083184.1| Oryza sativa (indica cultivar-group) clone 4S3B53 mRNA sequence Length = 471 Score = 317 bits (160), Expect = 3e-83 Identities = 256/288 (88%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 326 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 267 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 266 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 207 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 206 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 147 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcgagc 474 |||||||||||| |||||||||||||| | || |||||||||||||| ||||||||||| Sbjct: 146 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagccttgaccttgcgagc 87 Query: 475 acgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 522 |||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct: 86 acgccttgggaagataaccagcttggccttgtatgtcttgagcctctg 39
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 228 bits (115), Expect = 2e-56 Identities = 199/227 (87%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20894117 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20894176 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 20894177 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20894236 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20894237 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20894296 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 |||||||||||| |||||||||||||| | || ||||||||||||| Sbjct: 20894297 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 20894343 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Plus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 20894430 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 20894489 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 20894490 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 20894549 Query: 579 tgccaatagtaggagctagcttcttcgggatgcccgc 615 | ||||| || ||||| |||||| ||||||||||| Sbjct: 20894550 ttccaatggttggagcatacttcttggggatgcccgc 20894586 Score = 91.7 bits (46), Expect = 3e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 |||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 20894901 cttcagctcctcaagggtaaagcctctcccagccctcgacttcatgttgtactt 20894954
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 228 bits (115), Expect = 2e-56 Identities = 199/227 (87%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 20887146 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 20887205 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 20887206 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 20887265 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 20887266 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 20887325 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 |||||||||||| |||||||||||||| | || ||||||||||||| Sbjct: 20887326 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 20887372 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Plus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 20887459 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 20887518 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 20887519 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 20887578 Query: 579 tgccaatagtaggagctagcttcttcgggatgcccgc 615 | ||||| || ||||| |||||| ||||||||||| Sbjct: 20887579 ttccaatggttggagcatacttcttggggatgcccgc 20887615 Score = 91.7 bits (46), Expect = 3e-15 Identities = 52/54 (96%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 |||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 20887930 cttcagctcctcaagggtaaagcctctcccagccctcgacttcatgttgtactt 20887983
>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12 map MAP_LOC, complete sequence Length = 167323 Score = 228 bits (115), Expect = 2e-56 Identities = 199/227 (87%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||||||||| || ||| ||||| ||||||||||| || || Sbjct: 28395 tcacttcttctcttccttctctgcctcagcagccctcttctggcgggcaccaacatggcg 28336 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| |||| |||||| | ||||||||||||||||||||||| || || Sbjct: 28335 ctggttcatcctctcaacacggagcttagcataggccttgaacgccttcatctcatcggt 28276 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| | |||||| |||||||||||||||||| ||||||||| ||||||||||| Sbjct: 28275 gaccttcacaacctcaactgagcgcttctcaccacgagcaataggcatgtagtcaccctg 28216 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 |||||||||||| |||||||||||||| | || ||||||||||||| Sbjct: 28215 gacctgggtggcagtggcaagttcctcggcagtggaatcaccagcct 28169 Score = 129 bits (65), Expect = 1e-26 Identities = 134/157 (85%) Strand = Plus / Minus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct: 28082 ccttgaccttgcgagcacgccttgggaagataaccagcttggccttgtatgtcttgagcc 28023 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | |||| ||| | ||||||||||| | ||| || |||||||||||||| |||| Sbjct: 28022 tctggacattagcctggagtccctcaagtgagcggttcttgcggcggtgatccacggaaa 27963 Query: 579 tgccaatagtaggagctagcttcttcgggatgcccgc 615 | ||||| || ||||| |||||| ||||||||||| Sbjct: 27962 ttccaatggttggagcatacttcttggggatgcccgc 27926 Score = 91.7 bits (46), Expect = 3e-15 Identities = 52/54 (96%) Strand = Plus / Minus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 |||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 27611 cttcagctcctcaagggtaaagcctctcccagccctcgacttcatgttgtactt 27558
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 204 bits (103), Expect = 3e-49 Identities = 196/227 (86%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 866728 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 866787 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 866788 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 866847 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 866848 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 866907 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 ||||||||||||||||||||| |||||||| || || |||||||||| Sbjct: 866908 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 866954 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 867034 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 867093 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 867094 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 867153 Query: 579 tgccaat 585 ||||||| Sbjct: 867154 tgccaat 867160 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 ||||||||| |||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 867315 cttcagctcttcaagggtgaagccccttccagccctagacttcatgttgtactt 867368
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 204 bits (103), Expect = 3e-49 Identities = 196/227 (86%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 149862 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 149921 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 149922 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 149981 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 149982 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 150041 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 ||||||||||||||||||||| |||||||| || || |||||||||| Sbjct: 150042 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 150088 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 150168 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 150227 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 150228 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 150287 Query: 579 tgccaat 585 ||||||| Sbjct: 150288 tgccaat 150294 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 ||||||||| |||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 150449 cttcagctcttcaagggtgaagccccttccagccctagacttcatgttgtactt 150502
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 204 bits (103), Expect = 3e-49 Identities = 196/227 (86%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaagctgccg 294 ||||||||| ||||||||||| |||||||| ||| ||||| |||||||| | || || Sbjct: 47623 tcacttcttctcttccttctcagcctcggccgccctcttctgccgggcaccgatgtggcg 47682 Query: 295 ctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctcctcagt 354 ||||||||||||||| || | |||||| ||||||||||||| |||||||| || || || Sbjct: 47683 ctggttcatcctctccacgcgcagcttggcgtaggccttgaatgccttcatgtcatccgt 47742 Query: 355 gaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtcaccctg 414 |||||||| || ||||||| |||||||||| ||||| || |||||||| ||||||||||| Sbjct: 47743 gaccttcacgacctcaaccgagcgcttctcgccacgggtgataggcatgtagtcaccctg 47802 Query: 415 gacctgggtggctgtggcaagttcctcaggggtagaatcaccagcct 461 ||||||||||||||||||||| |||||||| || || |||||||||| Sbjct: 47803 gacctgggtggctgtggcaagctcctcaggagtcgagtcaccagcct 47849 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Plus Query: 459 ccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtc 518 |||| |||||||| ||||| ||||||||||| || ||||| |||||||| ||||| || | Sbjct: 47929 ccttgaccttgcgggcacgtcttgggaagatgacaagcttggccttgtaggtcttcagcc 47988 Query: 519 tctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatccacagaaa 578 |||| | || | ||||| ||| |||||||| | ||| ||||||||||||||||| || | Sbjct: 47989 tctggacattggcctgcagaccttcaagtgagcggttcttacggcggtgatccactgaga 48048 Query: 579 tgccaat 585 ||||||| Sbjct: 48049 tgccaat 48055 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactt 672 ||||||||| |||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 48210 cttcagctcttcaagggtgaagccccttccagccctagacttcatgttgtactt 48263
>emb|AJ222784.1|HVJ222784 Hordeum vulgare mRNA for ribosomal like-protein, clone RG131 Length = 291 Score = 153 bits (77), Expect = 9e-34 Identities = 191/229 (83%) Strand = Plus / Minus Query: 229 atcttatcacttcttttcttccttctctgcctcggcggccttcttcgtgcgggcaccaag 288 |||| |||||||||| || |||||||| |||||||| ||||||||| | ||| || | Sbjct: 232 atctcatcacttcttctcctccttctccgcctcggcagccttcttctgcctggctcccaa 173 Query: 289 ctgccgctggttcatcctctcgacacagagcttgccgtaggccttgaacgccttcatctc 348 ||| |||||||||||||||||||| | ||||||||| |||||||||||| |||||||||| Sbjct: 172 ctggcgctggttcatcctctcgacgcggagcttgccataggccttgaactccttcatctc 113 Query: 349 ctcagtgaccttcatgagctcaaccaagcgcttctcaccacgagtaataggcatatagtc 408 ||| || |||||| || || || |||||||||| ||||| | ||| ||||| ||||| Sbjct: 112 ctctgtcaccttcgcgacatccactgagcgcttctctccacgggcaatgggcatgtagtc 53 Query: 409 accctggacctgggtggctgtggcaagttcctcaggggtagaatcacca 457 |||||||||||| ||||| ||||||| ||||| || ||||| |||||| Sbjct: 52 accctggacctgtgtggcgttggcaagctcctccggagtagactcacca 4
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 2e-25 Identities = 161/193 (83%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 277 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 332 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 3696256 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 3696315 Query: 333 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 392 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 3696316 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 3696375 Query: 393 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcaggggta 448 ||||||||| || |||||||||||||||||||| |||||||| ||||| | || Sbjct: 3696376 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 3696435 Query: 449 gaatcaccagcct 461 ||||||||||||| Sbjct: 3696436 gaatcaccagcct 3696448 Score = 85.7 bits (43), Expect = 2e-13 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactttccgag 678 ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||| || Sbjct: 3697869 cttcagcacctcaaggataaagcctctcccagccctcgacttcatgttgtac-ttcaaag 3697927 Query: 679 tctggcattgcacaatggg 697 ||||||| ||||||||||| Sbjct: 3697928 tctggcactgcacaatggg 3697946 Score = 40.1 bits (20), Expect = 9.6 Identities = 59/72 (81%) Strand = Plus / Plus Query: 539 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 598 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 3696909 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 3696968 Query: 599 ttcttcgggatg 610 |||||||||||| Sbjct: 3696969 ttcttcgggatg 3696980
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 125 bits (63), Expect = 2e-25 Identities = 161/193 (83%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 277 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 332 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 19753 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 19812 Query: 333 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 392 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 19813 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 19872 Query: 393 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcaggggta 448 ||||||||| || |||||||||||||||||||| |||||||| ||||| | || Sbjct: 19873 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 19932 Query: 449 gaatcaccagcct 461 ||||||||||||| Sbjct: 19933 gaatcaccagcct 19945 Score = 85.7 bits (43), Expect = 2e-13 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactttccgag 678 ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||| || Sbjct: 21366 cttcagcacctcaaggataaagcctctcccagccctcgacttcatgttgtac-ttcaaag 21424 Query: 679 tctggcattgcacaatggg 697 ||||||| ||||||||||| Sbjct: 21425 tctggcactgcacaatggg 21443 Score = 40.1 bits (20), Expect = 9.6 Identities = 59/72 (81%) Strand = Plus / Plus Query: 539 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 598 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 20406 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 20465 Query: 599 ttcttcgggatg 610 |||||||||||| Sbjct: 20466 ttcttcgggatg 20477
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 125 bits (63), Expect = 2e-25 Identities = 161/193 (83%), Gaps = 8/193 (4%) Strand = Plus / Plus Query: 277 gcgggcaccaagctgccgctggttcatcctctcgacacagagcttgc----cgtaggcct 332 ||||||||||| || ||||||||||||||||| |||| |||||| ||||||||| Sbjct: 174762 gcgggcaccaacatggcgctggttcatcctctcaacacggagcttaattagcgtaggcct 174821 Query: 333 tgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttctcaccacgag 392 |||||||||||||||| || |||||||||| ||||||| ||||||||||||| |||| Sbjct: 174822 tgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttctcaccgcgag 174881 Query: 393 taataggcat----atagtcaccctggacctgggtggctgtggcaagttcctcaggggta 448 ||||||||| || |||||||||||||||||||| |||||||| ||||| | || Sbjct: 174882 caataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcctcggcagtg 174941 Query: 449 gaatcaccagcct 461 ||||||||||||| Sbjct: 174942 gaatcaccagcct 174954 Score = 85.7 bits (43), Expect = 2e-13 Identities = 71/79 (89%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 619 cttcagctcctcaagggtaaagcctctcccagcccttgccttcatgttgtactttccgag 678 ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||| || Sbjct: 176375 cttcagcacctcaaggataaagcctctcccagccctcgacttcatgttgtac-ttcaaag 176433 Query: 679 tctggcattgcacaatggg 697 ||||||| ||||||||||| Sbjct: 176434 tctggcactgcacaatggg 176452 Score = 40.1 bits (20), Expect = 9.6 Identities = 59/72 (81%) Strand = Plus / Plus Query: 539 ccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagtaggagctagc 598 ||||||||||| | ||| || |||||||| ||||| ||||| ||||| || |||| | Sbjct: 175415 ccctcaagtgagcggttcttgcggcggtggtccacggaaattccaatggtcggagtatac 175474 Query: 599 ttcttcgggatg 610 |||||||||||| Sbjct: 175475 ttcttcgggatg 175486
>gb|DQ200371.1| Solanum tuberosum clone 057F09 unknown mRNA Length = 820 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 409 accctggacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaacctt 468 |||||||||||||||||| || ||||||||||| | |||||||||||||||| ||||| Sbjct: 453 accctggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgacctt 394 Query: 469 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 522 ||||||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 393 cttagcacgccttgggaagataactagcttagccttgtaggtcttaagcctctg 340 Score = 44.1 bits (22), Expect = 0.61 Identities = 40/46 (86%) Strand = Plus / Minus Query: 317 agcttgccgtaggccttgaacgccttcatctcctcagtgaccttca 362 |||||||| ||||||||||| | |||||||| || |||||||||| Sbjct: 542 agcttgccataggccttgaatgatttcatctcatctgtgaccttca 497
>gb|AY395689.1| Solanum brevidens 60S ribosomal protein L13 (Ci-1) mRNA, partial cds Length = 635 Score = 115 bits (58), Expect = 2e-22 Identities = 100/114 (87%) Strand = Plus / Minus Query: 409 accctggacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaacctt 468 |||||||||||||||||| || ||||||||||| | |||||||||||||||| ||||| Sbjct: 484 accctggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgacctt 425 Query: 469 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 522 |||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct: 424 cttggcacgccttgggaagataacaagcttagccttgtaggtcttgagcctctg 371
>ref|NM_189111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 113 bits (57), Expect = 8e-22 Identities = 121/142 (85%), Gaps = 4/142 (2%) Strand = Plus / Minus Query: 324 cgtaggccttgaacgccttcatctcctcagtgaccttcatgagctcaaccaagcgcttct 383 ||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||| Sbjct: 928 cgtaggccttgaacgccttcatctcatcggtgaccttcacagcctcaaccgagcgcttct 869 Query: 384 caccacgagtaataggcat----atagtcaccctggacctgggtggctgtggcaagttcc 439 |||| |||| ||||||||| || |||||||||||||||||||| |||||||| ||| Sbjct: 868 caccgcgagcaataggcatgtaattaatcaccctggacctgggtggcagtggcaagctcc 809 Query: 440 tcaggggtagaatcaccagcct 461 || | || ||||||||||||| Sbjct: 808 tcggcagtggaatcaccagcct 787
>gb|BT014105.1| Lycopersicon esculentum clone 133209F, mRNA sequence Length = 811 Score = 107 bits (54), Expect = 5e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 413 tggacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaaccttgcga 472 |||||||||||||| || ||||||||||| | |||||||||||||||| ||||| | Sbjct: 486 tggacctgggtggcagtagcaagttcctctgcactagaatcaccagccttgaccttctta 427 Query: 473 gcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctg 522 |||||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 426 gcacgccttgggaagataactagcttagccttgtaggtcttaagcctctg 377
>gb|AY479981.1| Capsicum annuum induced protein BnC24B mRNA, partial sequence Length = 622 Score = 103 bits (52), Expect = 8e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 391 agtaataggcatatagtcaccctggacctgggtggctgtggcaagttcctcaggggtaga 450 ||||||||||| ||| |||||||||||||||||| || ||||| ||||| | |||| Sbjct: 509 agtaataggcagatatggaccctggacctgggtggcagtagcaagctcctctgcactaga 450 Query: 451 atcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttgtacgt 510 |||||||||||| || || |||||||||||||||||| || |||||||||||||| || Sbjct: 449 atcaccagccttgactttcttagcacgccttgggaagatgacaagcttagccttgtaagt 390 Query: 511 cttgagtctctg 522 |||||| ||||| Sbjct: 389 cttgagcctctg 378
>gb|BT012753.1| Lycopersicon esculentum clone 113692F, mRNA sequence Length = 962 Score = 101 bits (51), Expect = 3e-18 Identities = 177/219 (80%) Strand = Plus / Minus Query: 409 accctggacctgggtggctgtggcaagttcctcaggggtagaatcaccagccttaacctt 468 ||||||||| |||||||| | ||||||||||||| |||||||||||||||| || || Sbjct: 495 accctggacttgggtggcattagcaagttcctcagcactagaatcaccagccttgacttt 436 Query: 469 gcgagcacgccttgggaagataaccagcttagccttgtacgtcttgagtctctgaatgtt 528 |||| |||||||||||||||| |||||||| ||||| |||||| ||||||| | ||| Sbjct: 435 cttagcatgccttgggaagataacgagcttagctttgtatgtcttgggtctctggacgtt 376 Query: 529 agactgcataccctcaagtgacctgtttttacggcggtgatccacagaaatgccaatagt 588 | ||| | ||| ||||| || ||||| | || | ||||||||||| |||||| ||||| Sbjct: 375 ggtctggagaccttcaagggatctgttcctgcgcctgtgatccacagcaatgccgatagt 316 Query: 589 aggagctagcttcttcgggatgcccgctgtcttcagctc 627 ||||| || || || ||||| || |||| |||||||| Sbjct: 315 tggagcaagttttttggggataccagctgctttcagctc 277
>gb|AF457937.1| Zea mays clone cho1c.pk002.p17, mRNA sequence Length = 527 Score = 101 bits (51), Expect = 3e-18 Identities = 181/223 (81%), Gaps = 3/223 (1%) Strand = Plus / Minus Query: 453 caccagccttaaccttgcgagcacgcc-ttgggaagataaccagcttagccttgtacgtc 511 ||||||| || |||||| ||||||||| ||||||||||| |||||||| | ||||| ||| Sbjct: 487 caccagcnttgaccttgngagcacgccattgggaagatanccagcttaccgttgtatgtc 428 Query: 512 -ttgagtctctgaatgttagactgcataccctcaagtgacctgtttttacggcggtgatc 570 || || || || | || | ||||| |||||||| || || || || |||||||||| Sbjct: 427 cttaagcctatggacattggcctgcagcccctcaagggatctattcttgcggcggtgatn 368 Query: 571 cacagaaatgccaatagtaggagctagcttcttcgggatgcccgctgtcttcagctcctc 630 ||||||| | ||||| || ||||| ||| | | || |||||||| | ||||| |||||| Sbjct: 367 cacagaantcccaatggttggagcaagccttnttggaatgcccgcagccttcaactcctc 308 Query: 631 aagggtaaagcctctcccagcccttg-ccttcatgttgtactt 672 |||||||||||||||||||||| ||| | ||||||||| |||| Sbjct: 307 aagggtaaagcctctcccagccgttgacnttcatgttgnactt 265
>emb|AJ132537.1|PAB132537 Picea abies mRNA for 60S ribosomal protein L13E Length = 932 Score = 60.0 bits (30), Expect = 1e-05 Identities = 66/78 (84%) Strand = Plus / Minus Query: 447 tagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttgt 506 |||||||||||||||| | |||||||||| |||||||||| ||||| ||| || |||| Sbjct: 480 tagaatcaccagcctttagcttgcgagcagttcttgggaagacaaccaacttcgctttgt 421 Query: 507 acgtcttgagtctctgaa 524 | || || |||||||||| Sbjct: 420 atgttttcagtctctgaa 403
>emb|Z22618.1|BNC24AGNA B.napus cold induced protein (BnC24A) mRNA Length = 792 Score = 58.0 bits (29), Expect = 4e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 505 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 444 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 385 Query: 506 tacgtcttgagtctctg 522 || || ||||| ||||| Sbjct: 384 taggttttgagcctctg 368
>emb|Z22620.1|BNC24AGNC B.napus cold induced protein (BnC24B) Length = 805 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 505 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 459 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 400 Query: 506 ta 507 || Sbjct: 399 ta 398
>emb|Z22619.1|BNC24AGNB B.napus cold induced protein (BnC24B) Length = 507 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacgccttgggaagataaccagcttagccttg 505 ||||||||||||||||| ||||| | ||||| | |||||||| |||| |||||||||| Sbjct: 65 gtagaatcaccagccttgaccttcctggcacgacgcgggaagatgaccaacttagccttg 6 Query: 506 ta 507 || Sbjct: 5 ta 4
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 106 tgaacagcataccatgcaaacaagtac 132 |||||| |||||||||||||||||||| Sbjct: 194726 tgaacaacataccatgcaaacaagtac 194752
>ref|NM_122295.2| Arabidopsis thaliana structural constituent of ribosome AT5G23900 mRNA, complete cds Length = 822 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 468 tggcaagctcctctggagtagaatcaccagcctt 435
>ref|NM_114755.1| Arabidopsis thaliana structural constituent of ribosome AT3G48960 mRNA, complete cds Length = 621 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 482 gggaagataaccagcttagccttgta 507 ||||||||||||| |||||||||||| Sbjct: 377 gggaagataaccaacttagccttgta 352
>gb|AC013351.7| Drosophila melanogaster clone BACR06H06, complete sequence Length = 186935 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 tgaaacaaaatatcttatcact 239 |||||||||||||||||||||| Sbjct: 127993 tgaaacaaaatatcttatcact 128014
>gb|AC018484.5| Drosophila melanogaster clone BACR13A13, complete sequence Length = 172746 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 tgaaacaaaatatcttatcact 239 |||||||||||||||||||||| Sbjct: 54139 tgaaacaaaatatcttatcact 54160
>emb|AL132967.1|ATT2J13 Arabidopsis thaliana DNA chromosome 3, BAC clone T2J13 Length = 85109 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 482 gggaagataaccagcttagccttgta 507 ||||||||||||| |||||||||||| Sbjct: 68643 gggaagataaccaacttagccttgta 68618
>gb|AC110489.7| Homo sapiens 3 BAC RP11-324N13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 19236 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 235 tcacttcttttcttccttctct 256 |||||||||||||||||||||| Sbjct: 13499 tcacttcttttcttccttctct 13520
>gb|AY052746.1| Arabidopsis thaliana AT5g23900/MRO11_6 mRNA, complete cds Length = 621 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 430 tggcaagctcctctggagtagaatcaccagcctt 397
>gb|AF378895.1|AF378895 Arabidopsis thaliana AT5g23900/MRO11_6 mRNA, complete cds Length = 784 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 469 tggcaagctcctctggagtagaatcaccagcctt 436
>emb|BX830473.1|CNS0A1BP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZC09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 569 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 253 tggcaagctcctctggagtagaatcaccagcctt 220
>emb|BX831702.1|CNS09YT0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH25ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 551 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 235 tggcaagctcctctggagtagaatcaccagcctt 202
>emb|BX841732.1|CNS09YL7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL53ZC10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 751 Score = 44.1 bits (22), Expect = 0.61 Identities = 31/34 (91%) Strand = Plus / Minus Query: 429 tggcaagttcctcaggggtagaatcaccagcctt 462 ||||||| ||||| || ||||||||||||||||| Sbjct: 435 tggcaagctcctctggagtagaatcaccagcctt 402
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 0.61 Identities = 25/26 (96%) Strand = Plus / Minus Query: 321 tgccgtaggccttgaacgccttcatc 346 |||||| ||||||||||||||||||| Sbjct: 5691966 tgccgtcggccttgaacgccttcatc 5691941
>gb|AE003782.4| Drosophila melanogaster chromosome 2L, section 81 of 83 of the complete sequence Length = 298116 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 218 tgaaacaaaatatcttatcact 239 |||||||||||||||||||||| Sbjct: 272847 tgaaacaaaatatcttatcact 272868
>gb|DP000014.1| Callithrix jacchus target 1 genomic scaffold Length = 1952403 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 cttttcttccttctctgcctc 261 ||||||||||||||||||||| Sbjct: 1874742 cttttcttccttctctgcctc 1874722
>gb|AY743426.1| Metridium senile NaK-ATPase alpha subunit isoform 1 mRNA, partial cds Length = 605 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caaacaagtaccacgtatcaa 142 ||||||||||||||||||||| Sbjct: 277 caaacaagtaccacgtatcaa 297
>gb|AY389645.1| Hyacinthus orientalis cold-induced protein mRNA, partial cds Length = 558 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 476 cgccttgggaagataaccagcttagccttgtac 508 ||||||||||| ||||| ||||| ||||||||| Sbjct: 357 cgccttgggaaaataacaagcttggccttgtac 325
>ref|XM_960094.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctc 255 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>ref|XM_328761.1| Neurospora crassa OR74A hypothetical protein (NCU08056.1) partial mRNA Length = 4839 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 tcacttcttttcttccttctc 255 ||||||||||||||||||||| Sbjct: 4839 tcacttcttttcttccttctc 4819
>gb|AC138401.9| Mus musculus chromosome 13, clone RP24-79G5, complete sequence Length = 209942 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 cctcagtgaccttcatgagct 368 ||||||||||||||||||||| Sbjct: 59628 cctcagtgaccttcatgagct 59648
>emb|AL391841.17| Human DNA sequence from clone RP11-123G14 on chromosome 13 Contains part of a novel gene (FLJ22153) and a CpG island, complete sequence Length = 99441 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 236 cacttcttttcttccttctctgcct 260 ||||||||||||||| ||||||||| Sbjct: 53023 cacttcttttcttccctctctgcct 52999
>emb|AL356117.16| Human DNA sequence from clone RP11-258G21 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 127079 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 tatcttatcacttcttttctt 248 ||||||||||||||||||||| Sbjct: 62543 tatcttatcacttcttttctt 62563
>gb|AC146674.3| Callithrix jacchus clone CH259-338M13, complete sequence Length = 228448 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 cttttcttccttctctgcctc 261 ||||||||||||||||||||| Sbjct: 150787 cttttcttccttctctgcctc 150767
>gb|AC158627.6| Mus musculus 10 BAC RP23-451N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183225 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 aaatagaagaagaaacaagtc 63 ||||||||||||||||||||| Sbjct: 155030 aaatagaagaagaaacaagtc 155010
>gb|AC084242.4|AC084242 Arabidopsis thaliana chromosome 1 BAC T24P22 genomic sequence, complete sequence Length = 18062 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 tatcacttcttttcttccttctctg 257 ||||||||| ||||||||||||||| Sbjct: 4843 tatcacttcatttcttccttctctg 4867
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 tatcacttcttttcttccttctctg 257 ||||||||| ||||||||||||||| Sbjct: 49125 tatcacttcatttcttccttctctg 49149
>dbj|AB005244.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRO11 Length = 82415 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 429 tggcaagttcctcaggggtagaatcaccagcct 461 ||||||| ||||| || |||||||||||||||| Sbjct: 62053 tggcaagctcctctggagtagaatcaccagcct 62085
>emb|BX957286.14| Zebrafish DNA sequence from clone CH211-119B12 in linkage group 20, complete sequence Length = 161104 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 615 ctgtcttcagctcctcaaggg 635 ||||||||||||||||||||| Sbjct: 2229 ctgtcttcagctcctcaaggg 2209
>emb|BX537270.4| Zebrafish DNA sequence from clone DKEY-278E24 in linkage group 4, complete sequence Length = 175518 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 636 taaagcctctcccagcccttg 656 ||||||||||||||||||||| Sbjct: 114454 taaagcctctcccagcccttg 114434
>emb|BX510652.6| Zebrafish DNA sequence from clone CH211-107N23 in linkage group 4, complete sequence Length = 165746 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 636 taaagcctctcccagcccttg 656 ||||||||||||||||||||| Sbjct: 58549 taaagcctctcccagcccttg 58529
>gb|AC155832.2| Mus musculus 10 BAC RP24-147J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 153257 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 aaatagaagaagaaacaagtc 63 ||||||||||||||||||||| Sbjct: 2206 aaatagaagaagaaacaagtc 2186
>gb|L31416.1|TOBXANC1 Nicotiana tabacum (clone 6.2.1) mRNA, complete cds Length = 823 Score = 42.1 bits (21), Expect = 2.4 Identities = 46/53 (86%), Gaps = 1/53 (1%) Strand = Plus / Minus Query: 436 ttcctcaggggtagaatcaccagccttaaccttgcgagcacgccttgggaaga 488 |||||| |||| ||||||||||||||| ||| || |||||| |||||||||| Sbjct: 412 ttcctcgggggcagaatcaccagccttgacc-tggaagcacgtcttgggaaga 361
>ref|NM_114760.3| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.1 mRNA, complete cds Length = 873 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 481 gtagagtcaccagccttgaccttgcgggcacg 450
>ref|NM_180341.1| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.2 mRNA, complete cds Length = 859 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 467 gtagagtcaccagccttgaccttgcgggcacg 436
>ref|NM_001035754.1| Arabidopsis thaliana ATBBC1; structural constituent of ribosome AT3G49010 (ATBBC1) transcript variant AT3G49010.3 mRNA, complete cds Length = 906 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 496 gtagagtcaccagccttgaccttgcgggcacg 465
>ref|XM_515164.1| PREDICTED: Pan troglodytes similar to sterol regulatory element-binding transcription factor 2; sterol regulatory element-binding protein 2 (LOC458872), mRNA Length = 2372 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 301 cttccttctctccctcggcggcct 324
>gb|AC154520.3| Mus musculus BAC clone RP23-471P16 from chromosome 14, complete sequence Length = 199186 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 ccctggacctgggtggctgtggca 433 ||||| |||||||||||||||||| Sbjct: 114629 ccctgcacctgggtggctgtggca 114606
>ref|NM_173065.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 3, mRNA Length = 4418 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 2104 tcttccttctctgcctcggc 2123
>ref|NM_173064.1| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 2, mRNA Length = 4462 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 2148 tcttccttctctgcctcggc 2167
>ref|NM_170743.2| Homo sapiens interleukin 28 receptor, alpha (interferon, lambda receptor) (IL28RA), transcript variant 1, mRNA Length = 4549 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 2235 tcttccttctctgcctcggc 2254
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctgcctc 261 |||||||||||||| ||||||||| Sbjct: 448320 cttcttttcttcctcctctgcctc 448343
>gb|AC105379.11| Trypanosoma brucei chromosome 3 clone RPCI93-30P12, complete sequence Length = 165197 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctgcctc 261 |||||||||||||| ||||||||| Sbjct: 42366 cttcttttcttcctcctctgcctc 42389
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ggtacaaatagaagaagaaa 57 |||||||||||||||||||| Sbjct: 4602971 ggtacaaatagaagaagaaa 4602952
>gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, complete sequence Length = 173365 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 gcctggtctctatttccagc 169 |||||||||||||||||||| Sbjct: 36916 gcctggtctctatttccagc 36935
>gb|BC056158.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone MGC:65097 IMAGE:6169568), complete cds Length = 4290 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 431 cttccttctctccctcggcggcct 454
>gb|AC117586.10| Mus musculus chromosome 3, clone RP23-166M8, complete sequence Length = 215166 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 cttcttttcttccttctctg 257 |||||||||||||||||||| Sbjct: 30587 cttcttttcttccttctctg 30568
>gb|AY498874.1| Streptomyces lavendulae linear plasmid pSLV45 SLV.1 (SLV.1), SLV.1B (SLV.1B), SLV.2 (SLV.2), SLV.3 (SLV.3), SLV.4 (SLV.4), SLV.5 (SLV.5), SLV.6 (SLV.6), SLV.7, SLV.8, SLV.9 (SLV.9), SLV.10 (SLV.10), SLV.11 (SLV.11), SLV.12 (SLV.12), SLV.13 (SLV.13), SLV.14 (SLV.14), SLV.15 (SLV.15), SLV.16 (SLV.16), SLV.17 (SLV.17), SLV.18 (SLV.18), RegA (regA), TraSLVA (traSLVA), SLV.21 (SLV.21), ParSLV (parSLV), SLV.23 (SLV.23), SLV.24 (SLV.24), TpgSLV (tpgSLV), SLV.26 (SLV.26), SLV.27 (SLV.27), TraSLVB (traSLVB), SLV.29 (SLV.29), SLV.30 (SLV.30), TraSLR, SLV.32 (SLV.32), SLV.33 (SLV.33), SLV.34 (SLV.34), SLV.35 (SLV.35), SLV.36 (SLV.36), and SLV.37 (SLV.37) genes, complete cds Length = 41987 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 tccttctctgcctcggcggc 267 |||||||||||||||||||| Sbjct: 36942 tccttctctgcctcggcggc 36923
>gb|AC115738.9| Mus musculus chromosome 3, clone RP23-474P24, complete sequence Length = 188507 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctg 257 |||||||||||||||||||| Sbjct: 22319 cttcttttcttccttctctg 22338
>gb|AY456009.1| Cochliobolus heterostrophus putative histidine kinase HHK6p (HHK6) gene, complete cds Length = 4570 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ccttcatgagctcaaccaag 376 |||||||||||||||||||| Sbjct: 3081 ccttcatgagctcaaccaag 3062
>ref|XM_805873.1| Trypanosoma cruzi strain CL Brener 60S ribosomal protein L13 (Tc00.1047053510323.30) partial mRNA Length = 657 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 619 cttcagctcctcaagggtaaagcc 642 |||||||||||||| ||||||||| Sbjct: 258 cttcagctcctcaacggtaaagcc 235
>gb|BC051385.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5497929), containing frame-shift errors Length = 5706 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 400 cttccttctctccctcggcggcct 423
>gb|AC084390.1| Mus musculus BAC clone RP23-285H9 from 1, complete sequence Length = 177050 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gccttcatctcctcagtgac 357 |||||||||||||||||||| Sbjct: 109030 gccttcatctcctcagtgac 109011
>gb|AC011899.5| Homo sapiens BAC clone RP11-452C13 from 7, complete sequence Length = 214229 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 646 cccagcccttgccttcatgt 665 |||||||||||||||||||| Sbjct: 33684 cccagcccttgccttcatgt 33665
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 taggacaagtccccgatgataaca 207 ||||||||||| |||||||||||| Sbjct: 303643 taggacaagtcgccgatgataaca 303666
>gb|AF439325.1| Homo sapiens putative class II cytokine receptor CRF2/12 (CRF2/12) mRNA, complete cds Length = 4536 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 2222 tcttccttctctgcctcggc 2241
>emb|Z99716.4|HS250D10 Human DNA sequence from clone CTA-250D10 on chromosome 22 Contains the genes for SREBF2 (sterol regulatory element binding transcription factor 2), NAGA (alpha-N-acetylgalactosaminidase), a gene similar to neuronal-specific septin 3, a pseudogene similar to ANT2 (adenine nucleotide translocator 2), 2 mRNAs based on ESTs, a genomic marker D22S1178, a CA repeat polymorpism, ESTs and a CpG island, complete sequence Length = 220895 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 10275 cttccttctctccctcggcggcct 10298
>emb|AL731556.11| Human DNA sequence from clone RP11-428P16 on chromosome 10 Contains the 5' end of the KCNMA1 gene for potassium large conductance calcium-activated channel subfamily M alpha member 1, a novel zinc finger pseudogene (KIAA1629) and two CpG islands, complete sequence Length = 203003 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 acttcttttcttccttctct 256 |||||||||||||||||||| Sbjct: 92160 acttcttttcttccttctct 92141
>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5' end of the IL22RA1 gene for interleukin 22 receptor alpha 1, the IL28RA gene for interleukin 28 receptor alpha (interferon, lambda receptor), a novel gene and the 3' end of a novel gene, complete sequence Length = 164684 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 21070 tcttccttctctgcctcggc 21051
>ref|NM_053185.1| Mus musculus procollagen, type IV, alpha 6 (Col4a6), mRNA Length = 6021 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggccttgaacgccttcatctcctc 351 ||||||| |||||||||||||||| Sbjct: 1389 ggccttggacgccttcatctcctc 1366
>emb|AL353730.13| Human DNA sequence from clone RP11-55P9 on chromosome 9, complete sequence Length = 147810 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctg 257 |||||||||||||||||||| Sbjct: 72436 cttcttttcttccttctctg 72455
>emb|AL157703.14| Human DNA sequence from clone RP11-79K3 on chromosome 9p23-24.3, complete sequence Length = 90278 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 aagacaaaatttaggacaag 192 |||||||||||||||||||| Sbjct: 56549 aagacaaaatttaggacaag 56568
>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190580 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ttcttttcttccttctctgc 258 |||||||||||||||||||| Sbjct: 173415 ttcttttcttccttctctgc 173434
>gb|AY079381.1| Arabidopsis thaliana putative 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 652 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 413 gtagagtcaccagccttgaccttgcgggcacg 382
>gb|AY050854.1| Arabidopsis thaliana putative 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 844 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 461 gtagagtcaccagccttgaccttgcgggcacg 430
>emb|AL596215.7| Mouse DNA sequence from clone RP23-278I21 on chromosome 11, complete sequence Length = 203117 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 439 ctcaggggtagaatcaccagcctt 462 |||||||||||| ||||||||||| Sbjct: 127432 ctcaggggtagactcaccagcctt 127409
>emb|AL596110.15| Mouse DNA sequence from clone RP23-330N10 on chromosome 11 Contains the 3' end of a variant of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik), the Adora2b gene for adenosine A2b receptor, the gene for a novel protein (2410012H22Rik), a somatic cytochrome c (Cycs) pseudogene, a novel gene, a novel pseudogene, the gene for a novel protein (2810460C24Rik), the 3' end of the Ncor1 gene for nuclear receptor co-repressor 1 and two CpG islands, complete sequence Length = 214834 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 85 ggtagaaatccatcgactcactga 108 ||||||||||||| |||||||||| Sbjct: 146112 ggtagaaatccatagactcactga 146089
>emb|AL672260.25| Mouse DNA sequence from clone DN-127L1 on chromosome 3 Contains a Saccharomyces cerevisiae Nip7p homolog (pEachy) homolog pseudogene, a tumor protein translationally-controlled 1 (Tpt1) pseudogene, a high mobility group box 2 (Hmgb2) pseudogene and the Cd2 gene for CD2 antigen, complete sequence Length = 169010 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tctctgaatgttagactgca 536 |||||||||||||||||||| Sbjct: 119500 tctctgaatgttagactgca 119481
>emb|AL627262.8| Zebrafish DNA sequence from clone RP71-1L7 in linkage group 15 Contains part of a novel gene similar to human GRID2 (ionotropic glutamate receptor delta 2) and a CpG island, complete sequence Length = 145079 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gtacattttgggtacaaata 47 |||||||||||||||||||| Sbjct: 101453 gtacattttgggtacaaata 101472
>gb|BC066703.1| Danio rerio zgc:77049, mRNA (cDNA clone MGC:77049 IMAGE:6959871), complete cds Length = 3100 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 acttcttttcttccttctct 256 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>ref|NM_212874.1| Danio rerio zgc:77049 (zgc:77049), mRNA Length = 3100 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 acttcttttcttccttctct 256 |||||||||||||||||||| Sbjct: 2610 acttcttttcttccttctct 2629
>emb|CR590934.1| full-length cDNA clone CS0DJ001YF16 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1804 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 443 cttccttctctccctcggcggcct 466
>gb|AF500581.1| Aspicarpa brevipes phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 gagcacgccttgggaagata 490 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AF500540.1| Gaudichaudia mcvaughii phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 gagcacgccttgggaagata 490 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AF436795.1| Mascagnia dipholiphylla phytochrome C (PHYC) gene, partial cds Length = 1177 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 471 gagcacgccttgggaagata 490 |||||||||||||||||||| Sbjct: 1140 gagcacgccttgggaagata 1159
>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete sequence Length = 75812 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 579 tgccaatagtaggagctagc 598 |||||||||||||||||||| Sbjct: 60142 tgccaatagtaggagctagc 60123
>gb|AY081595.1| Arabidopsis thaliana 60S ribosomal protein L13, BBC1 protein (At3g49010) mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 413 gtagagtcaccagccttgaccttgcgggcacg 382
>gb|AC105361.2| Homo sapiens chromosome , clone RP11-170D6, complete sequence Length = 160074 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gagtaataggcatatagtca 409 |||||||||||||||||||| Sbjct: 50212 gagtaataggcatatagtca 50193
>gb|AC087714.6| Homo sapiens chromosome 17, clone RP11-167A1, complete sequence Length = 163377 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gagtaataggcatatagtca 409 |||||||||||||||||||| Sbjct: 46492 gagtaataggcatatagtca 46511
>gb|AY065137.1| Arabidopsis thaliana 60S ribosomal protein L13, BBC1 protein (At3g49010; T2J13.150) mRNA, complete cds Length = 859 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 467 gtagagtcaccagccttgaccttgcgggcacg 436
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tcaccctggacctgggtggc 426 |||||||||||||||||||| Sbjct: 992835 tcaccctggacctgggtggc 992854
>gb|AF428384.1|AF428384 Arabidopsis thaliana AT3g49010/T2J13_150 mRNA, complete cds Length = 821 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 457 gtagagtcaccagccttgaccttgcgggcacg 426
>gb|BC051799.1| Homo sapiens sterol regulatory element binding transcription factor 2, mRNA (cDNA clone IMAGE:5498684), partial cds Length = 5251 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 451 cttccttctctccctcggcggcct 474
>ref|NM_004599.2| Homo sapiens sterol regulatory element binding transcription factor 2 (SREBF2), mRNA Length = 4325 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 462 cttccttctctccctcggcggcct 485
>gb|AC154180.2| Mus musculus BAC clone RP24-469E6 from chromosome 14, complete sequence Length = 187810 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 ttcttttcttccttctctgc 258 |||||||||||||||||||| Sbjct: 10293 ttcttttcttccttctctgc 10312
>dbj|AK090269.1| Mus musculus adult male vesicular gland cDNA, RIKEN full-length enriched library, clone:G630031L05 product:procollagen, type IV, alpha 6, full insert sequence Length = 3096 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggccttgaacgccttcatctcctc 351 ||||||| |||||||||||||||| Sbjct: 341 ggccttggacgccttcatctcctc 318
>gb|BC057648.1| Mus musculus procollagen, type IV, alpha 6, mRNA (cDNA clone MGC:67937 IMAGE:3500535), complete cds Length = 3952 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggccttgaacgccttcatctcctc 351 ||||||| |||||||||||||||| Sbjct: 1287 ggccttggacgccttcatctcctc 1264
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 agaaatgccaatagtaggag 593 |||||||||||||||||||| Sbjct: 13558552 agaaatgccaatagtaggag 13558571
>gb|AC069014.21|AC069014 Mus musculus 11 BAC RP23-278K23 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 181557 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 cttcttttcttccttctctgcctc 261 ||||||| |||||||||||||||| Sbjct: 17258 cttctttccttccttctctgcctc 17235
>emb|BX824106.1|CNS0A6YY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZE02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 789 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 427 gtagagtcaccagccttgaccttgcgggcacg 396
>emb|BX823582.1|CNS0A6KK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS53ZB12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 450 gtagagtcaccagccttgaccttgcgggcacg 419
>gb|AC073918.13|AC073918 Mus musculus 11 BAC RP23-362J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 195667 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctgcctc 261 ||||||| |||||||||||||||| Sbjct: 8417 cttctttccttccttctctgcctc 8440
>gb|AY084928.1| Arabidopsis thaliana clone 12182 mRNA, complete sequence Length = 845 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 481 gtagagtcaccagccttgaccttgcgggcacg 450
>gb|AC087370.26| Homo sapiens chromosome 8, clone RP11-533K17, complete sequence Length = 53432 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 641 cctctcccagcccttgccttcatg 664 |||||||||||| ||||||||||| Sbjct: 9510 cctctcccagcctttgccttcatg 9487
>dbj|AK160364.1| Homo sapiens mRNA for FLJ00190 protein Length = 4519 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 tcttccttctctgcctcggc 264 |||||||||||||||||||| Sbjct: 2225 tcttccttctctgcctcggc 2244
>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map 14q24.3, complete sequence Length = 163312 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 ttagactgcataccctcaag 546 |||||||||||||||||||| Sbjct: 81443 ttagactgcataccctcaag 81424
>emb|X75162.1|ATRNABBC1 A.thaliana gene for BBC1 protein Length = 751 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 446 gtagaatcaccagccttaaccttgcgagcacg 477 ||||| ||||||||||| |||||||| ||||| Sbjct: 436 gtagagtcaccagccttgaccttgcgggcacg 405
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 atcacttcttttcttccttc 253 |||||||||||||||||||| Sbjct: 89941 atcacttcttttcttccttc 89960
>gb|AC154366.2| Mus musculus BAC clone RP24-567I24 from 17, complete sequence Length = 147597 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 tccacagaaatgccaatagt 588 |||||||||||||||||||| Sbjct: 36120 tccacagaaatgccaatagt 36101
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 tgccaatagtaggagctagc 598 |||||||||||||||||||| Sbjct: 216042 tgccaatagtaggagctagc 216061
>emb|CT841522.1| Homo sapiens SREBF2 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SREBF2.V2) Length = 3606 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 375 cttccttctctccctcggcggcct 398
>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177172 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 527 ttagactgcataccctcaag 546 |||||||||||||||||||| Sbjct: 35430 ttagactgcataccctcaag 35449
>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete sequences Length = 177933 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 cacttcttttcttccttctc 255 |||||||||||||||||||| Sbjct: 149849 cacttcttttcttccttctc 149830
>emb|AL954677.8| Zebrafish DNA sequence from clone DKEY-13J14 in linkage group 8, complete sequence Length = 186836 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gtacattttgggtacaaata 47 |||||||||||||||||||| Sbjct: 59572 gtacattttgggtacaaata 59591
>dbj|AP002847.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1742H10 Length = 155723 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 641 cctctcccagcccttgccttcatg 664 |||||||||||| ||||||||||| Sbjct: 146920 cctctcccagcctttgccttcatg 146897
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 ggtacaaatagaagaagaaa 57 |||||||||||||||||||| Sbjct: 4748379 ggtacaaatagaagaagaaa 4748360
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 574 agaaatgccaatagtaggag 593 |||||||||||||||||||| Sbjct: 85015 agaaatgccaatagtaggag 85034
>emb|AL591466.8| Mouse DNA sequence from clone RP23-279L23 on chromosome 11, complete sequence Length = 239847 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 cttcttttcttccttctctgcctc 261 ||||||| |||||||||||||||| Sbjct: 42732 cttctttccttccttctctgcctc 42755
>emb|AL645930.15| Mouse DNA sequence from clone RP23-434L7 on chromosome 3, complete sequence Length = 227993 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tctctgaatgttagactgca 536 |||||||||||||||||||| Sbjct: 209002 tctctgaatgttagactgca 208983
>emb|AL691493.17| Mouse DNA sequence from clone RP23-264D18 on chromosome X, complete sequence Length = 202742 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 328 ggccttgaacgccttcatctcctc 351 ||||||| |||||||||||||||| Sbjct: 44455 ggccttggacgccttcatctcctc 44478
>gb|U02031.1|HSU02031 Human sterol regulatory element binding protein-2 mRNA, complete cds Length = 4249 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cttccttctctgcctcggcggcct 269 ||||||||||| |||||||||||| Sbjct: 410 cttccttctctccctcggcggcct 433
>dbj|AB041351.1| Mus musculus Col4a6 mRNA for type IV collagen alpha 6 chain, complete cds Length = 6021 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 328 ggccttgaacgccttcatctcctc 351 ||||||| |||||||||||||||| Sbjct: 1389 ggccttggacgccttcatctcctc 1366
>dbj|AP004582.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB925E9 Length = 93034 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 641 cctctcccagcccttgccttcatg 664 |||||||||||| ||||||||||| Sbjct: 50834 cctctcccagcctttgccttcatg 50857 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,431,271 Number of Sequences: 3902068 Number of extensions: 6431271 Number of successful extensions: 157917 Number of sequences better than 10.0: 145 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157127 Number of HSP's gapped (non-prelim): 764 length of query: 700 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 677 effective length of database: 17,143,297,704 effective search space: 11606012545608 effective search space used: 11606012545608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
