>emb|Y09741.1|HVBTUBI Hordeum vulgare mRNA for beta-tubulin 1
          Length = 1646

 Score =  168 bits (85), Expect = 2e-39
 Identities = 101/106 (95%), Gaps = 1/106 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    gttgcgatgataaacagatt-ataacaaagcaccaaacagatnnaactctgcccctagaa 59
            |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||
Sbjct: 1525 gttgcgatgataaacagattcataacaaagcaccaaacagatcaaactctgcccctagaa 1466

                                                          
Query: 60   cccccacccagcaaagcaccacacagacctgcccctncttacatgt 105
            |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1465 cccccacccagcaaagcaccacacagacctccccctccttacatgt 1420

>gb|U76745.1|TAU76745 Triticum aestivum beta-tubulin 2 (tubb2) mRNA, complete cds
          Length = 1646

 Score =  113 bits (57), Expect = 1e-22
 Identities = 74/79 (93%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    gttgcgatgataaacagatt-ataacaaagcaccaaacagatnnaactctgcccctagaa 59
            |||| ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||||
Sbjct: 1504 gttgggatgataaacagatttataacaaagcaccaaacagatcaaactctgcccccagaa 1445

                               
Query: 60   cccccacccagcaaagcac 78
            |||||||||||||||||||
Sbjct: 1444 cccccacccagcaaagcac 1426

>emb|X54852.1|ASTUB1MR Oat TUB1 mRNA for beta-tubulin (partial)
          Length = 1420

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 27   aagcaccaaacagatnnaactctgccc 53
            |||||||||||||||  ||||||||||
Sbjct: 1223 aagcaccaaacagatcaaactctgccc 1197

>gb|AC116151.10| Mus musculus chromosome 5, clone RP24-84G9, complete sequence
          Length = 204954

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 62     cccacccagcaaagcaccacaca 84
              ||||||||||| |||||||||||
Sbjct: 199450 cccacccagcagagcaccacaca 199472

>ref|XM_422880.1| PREDICTED: Gallus gallus similar to Transcription elongation factor
           A protein 3 (Transcription elongation factor S-II
           protein 3) (Transcription elongation factor TFIIS.h)
           (LOC425088), mRNA
          Length = 1087

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 57  gaacccccacccagcaaagcacc 79
           ||||||||||||||| |||||||
Sbjct: 469 gaacccccacccagcgaagcacc 491

>gb|AY382194.1| Mus musculus clone 914 disintegrin and metalloprotease domain 33
            (Adam33) mRNA, complete cds; alternatively spliced
          Length = 2752

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   gcaccacacagacctgccc 93
            |||||||||||||||||||
Sbjct: 2445 gcaccacacagacctgccc 2463

>gb|AY382193.1| Mus musculus clone 906 disintegrin and metalloprotease domain 33
            (Adam33) mRNA, complete cds; alternatively spliced
          Length = 2747

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   gcaccacacagacctgccc 93
            |||||||||||||||||||
Sbjct: 2367 gcaccacacagacctgccc 2385

>gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complete sequence
          Length = 188794

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 62     cccacccagcaaagcaccacaca 84
              ||||||||||| |||||||||||
Sbjct: 155026 cccacccagcagagcaccacaca 155004

>emb|CR318664.15| Zebrafish DNA sequence from clone CH211-59L22 in linkage group 21,
             complete sequence
          Length = 161092

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    aaacagattataacaaagc 30
             |||||||||||||||||||
Sbjct: 68248 aaacagattataacaaagc 68266

>emb|AL357314.11| Human DNA sequence from clone RP4-682C21 on chromosome 1p31.1-31.3
             Contains the ACADM gene for acyl-Coenzyme A dehydrogenase,
             C-4 to C-12 straight chain, a dihydrolipoamide
             S-succinyltransferase (E2 component of 2-oxo-glutarate
             complex) (DLTS) pseudogene, the RABGGTB gene for Rab
             geranylgeranyltransferase, beta subunit and the 5' end of
             the MSH4 gene for mutS homolog 4 (E. coli), complete
             sequence
          Length = 111566

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    ataaacagattataacaaa 28
             |||||||||||||||||||
Sbjct: 90373 ataaacagattataacaaa 90355

>emb|Z48978.1|RNGFABEX1 R.norvegicus partial gfap gene for glial fibrillary acidic protein
          Length = 3070

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   ccacccagcaaagcaccac 81
            |||||||||||||||||||
Sbjct: 2865 ccacccagcaaagcaccac 2847

>gb|AC099677.2| Homo sapiens chromosome 1 clone RP4-631H13, complete sequence
          Length = 116236

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    tataacaaagcaccaaaca 38
             |||||||||||||||||||
Sbjct: 37680 tataacaaagcaccaaaca 37662

>gb|AC079264.23| Homo sapiens Xp BAC RP11-315B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 194851

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     gatgataaacagattataa 24
             |||||||||||||||||||
Sbjct: 31125 gatgataaacagattataa 31143

>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cacccagcaaagcaccaca 82
               |||||||||||||||||||
Sbjct: 2214612 cacccagcaaagcaccaca 2214630

>gb|AY268350.1| Homo sapiens mutS homolog 4 (E. coli) (MSH4) gene, complete cds
          Length = 118484

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   ataaacagattataacaaa 28
            |||||||||||||||||||
Sbjct: 7260 ataaacagattataacaaa 7242

>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     attataacaaagcaccaaa 36
              |||||||||||||||||||
Sbjct: 327539 attataacaaagcaccaaa 327557

>emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 in linkage group 14,
             complete sequence
          Length = 153626

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    attataacaaagcaccaaa 36
             |||||||||||||||||||
Sbjct: 86461 attataacaaagcaccaaa 86479

>gb|AF028784.1|AF028784 Rattus norvegicus glial fibrillary acidic proteins alpha and delta
            (GFAP) gene, alternatively spliced products, complete cds
          Length = 8797

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   ccacccagcaaagcaccac 81
            |||||||||||||||||||
Sbjct: 1000 ccacccagcaaagcaccac 982

>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 64      cacccagcaaagcaccaca 82
               |||||||||||||||||||
Sbjct: 1588525 cacccagcaaagcaccaca 1588543


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 728,651
Number of Sequences: 3902068
Number of extensions: 728651
Number of successful extensions: 51753
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51710
Number of HSP's gapped (non-prelim): 41
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)