ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd14g21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 2e-13 Identities = 151/187 (80%) Strand = Plus / Plus Query: 247 cttcctcctccattcggcgccgttgctcatcgagcacgaagatgatggtggtgctaagca 306 ||||||||||||| || ||||| ||||| |||||||||||||| | ||| ||| |||| Sbjct: 20366663 cttcctcctccatccgccgccgctgctcgtcgagcacgaagatcagcgtgctgcccagca 20366722 Query: 307 tgttcccatattctcgtgcaacagtccggctcgccgccagcttcccgggctccaactgga 366 |||| || || || | | || |||||||||||||||||||||||||||||| | ||| Sbjct: 20366723 tgttgccgtactcccttagcaccttccggctcgccgccagcttcccgggctccagccgga 20366782 Query: 367 gaaccctctcaatcttgtccaagatcgccatagcaccagggtgcactgcccagaagaggt 426 || | ||||| || | ||||||||||| | || ||||||||||| |||||||||| | Sbjct: 20366783 gagcgctctcgatttggtccaagatcgacggggctccagggtgcaccacccagaagagat 20366842 Query: 427 cattcca 433 | ||||| Sbjct: 20366843 cgttcca 20366849 Score = 77.8 bits (39), Expect = 4e-11 Identities = 168/211 (79%) Strand = Plus / Plus Query: 182 caccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccactgagccca 241 |||||| ||||| ||||| ||||| ||||||||| ||| | | ||||||||| ||| | Sbjct: 20401972 caccatggtctcaatggtgaaaccgggtccaaaccccagcgtcaccccccactcagctcc 20402031 Query: 242 ctctccttcctcctccattcggcgccgttgctcatcgagcacgaagatgatggtggtgct 301 ||||||||||||||||| || || || ||||| |||||||||||||| | ||| ||| Sbjct: 20402032 gtctccttcctcctccatccgccgtcgctgctcgtcgagcacgaagatcagcgtgctgcc 20402091 Query: 302 aagcatgttcccatattctcgtgcaacagtccggctcgccgccagcttcccgggctccaa 361 |||||||| || || || | | ||| ||||| |||||||||||||||| |||| | Sbjct: 20402092 gagcatgttgccgtactcccttagaaccctccgggtcgccgccagcttccccggctttag 20402151 Query: 362 ctggagaaccctctcaatcttgtccaagatc 392 ||||||| | ||||| || | |||||||||| Sbjct: 20402152 ctggagagcgctctcgatgtggtccaagatc 20402182 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 574 ccggtatgacggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 ||||||||| ||||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 20451879 ccggtatgagcgtctgcgaggcggagaccatctcgaaaagcgggtgctcgac 20451930 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 180 agcaccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccactgagcc 239 |||||||| ||||| ||||| ||||| |||||||| ||| ||| ||||||||| || Sbjct: 20451479 agcaccatggtctcaatggtgaaaccgggtccaaatcccagcatcaccccccactcggct 20451538 Query: 240 cactctccttcctcctccattcggcgccgttgctcatcgagcacgaagat 289 | ||||||||||||||||| || | || ||||| || ||||||||||| Sbjct: 20451539 ccgtctccttcctcctccatccgccttcgctgctcctccagcacgaagat 20451588 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 600 accatctcgaagagcgggcgctcgac 625 |||||||||||||||||||||||||| Sbjct: 20367022 accatctcgaagagcgggcgctcgac 20367047 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 182 caccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccact 234 |||||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||| Sbjct: 20366592 caccatggtctcaatggtgaaaccaggtccaaaccccatcatcaccccccact 20366644 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 cggctcgccgccagcttcccgggctc 358 ||||||||||||||||| |||||||| Sbjct: 10052404 cggctcgccgccagcttgccgggctc 10052379 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 20451704 gggtgcaccgcccagaagaggtcgttcca 20451732 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 601 ccatctcgaagagcgggcgctcgac 625 |||||||||| |||||||||||||| Sbjct: 18821009 ccatctcgaacagcgggcgctcgac 18821033 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 597 gacaccatctcgaagagcgggcgctcgac 625 ||||| |||||||| |||||||||||||| Sbjct: 10052131 gacactatctcgaacagcgggcgctcgac 10052103 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||| || |||||||||||||| ||||| Sbjct: 18799149 ccagggtggacggcccagaagaggtccttcca 18799180
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 85.7 bits (43), Expect = 2e-13 Identities = 151/187 (80%) Strand = Plus / Plus Query: 247 cttcctcctccattcggcgccgttgctcatcgagcacgaagatgatggtggtgctaagca 306 ||||||||||||| || ||||| ||||| |||||||||||||| | ||| ||| |||| Sbjct: 75563 cttcctcctccatccgccgccgctgctcgtcgagcacgaagatcagcgtgctgcccagca 75622 Query: 307 tgttcccatattctcgtgcaacagtccggctcgccgccagcttcccgggctccaactgga 366 |||| || || || | | || |||||||||||||||||||||||||||||| | ||| Sbjct: 75623 tgttgccgtactcccttagcaccttccggctcgccgccagcttcccgggctccagccgga 75682 Query: 367 gaaccctctcaatcttgtccaagatcgccatagcaccagggtgcactgcccagaagaggt 426 || | ||||| || | ||||||||||| | || ||||||||||| |||||||||| | Sbjct: 75683 gagcgctctcgatttggtccaagatcgacggggctccagggtgcaccacccagaagagat 75742 Query: 427 cattcca 433 | ||||| Sbjct: 75743 cgttcca 75749 Score = 77.8 bits (39), Expect = 4e-11 Identities = 168/211 (79%) Strand = Plus / Plus Query: 182 caccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccactgagccca 241 |||||| ||||| ||||| ||||| ||||||||| ||| | | ||||||||| ||| | Sbjct: 110872 caccatggtctcaatggtgaaaccgggtccaaaccccagcgtcaccccccactcagctcc 110931 Query: 242 ctctccttcctcctccattcggcgccgttgctcatcgagcacgaagatgatggtggtgct 301 ||||||||||||||||| || || || ||||| |||||||||||||| | ||| ||| Sbjct: 110932 gtctccttcctcctccatccgccgtcgctgctcgtcgagcacgaagatcagcgtgctgcc 110991 Query: 302 aagcatgttcccatattctcgtgcaacagtccggctcgccgccagcttcccgggctccaa 361 |||||||| || || || | | ||| ||||| |||||||||||||||| |||| | Sbjct: 110992 gagcatgttgccgtactcccttagaaccctccgggtcgccgccagcttccccggctttag 111051 Query: 362 ctggagaaccctctcaatcttgtccaagatc 392 ||||||| | ||||| || | |||||||||| Sbjct: 111052 ctggagagcgctctcgatgtggtccaagatc 111082 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 600 accatctcgaagagcgggcgctcgac 625 |||||||||||||||||||||||||| Sbjct: 75922 accatctcgaagagcgggcgctcgac 75947 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 182 caccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccact 234 |||||| ||||| ||||| ||||||||||||||| ||| ||| ||||||||| Sbjct: 75492 caccatggtctcaatggtgaaaccaggtccaaaccccatcatcaccccccact 75544
>ref|XM_476155.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1605 Score = 73.8 bits (37), Expect = 6e-10 Identities = 37/37 (100%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||||||||| Sbjct: 931 caccagggtgcactgcccagaagaggtcattccaatt 895
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 73.8 bits (37), Expect = 6e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||||||||| Sbjct: 31711 caccagggtgcactgcccagaagaggtcattccaatt 31747 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||| ||||| Sbjct: 22360 caccagggtgcactgcccagaagaggtcatttcaatt 22396 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||||||||||||||||||||| Sbjct: 16089 caccagggtgcaccgcccagaagaggtcattccaatt 16125 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||| ||||||||||||||||| Sbjct: 44314 caccagggtgcaccgcccaaaagaggtcattccaatt 44350
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0074P11, complete sequence Length = 148753 Score = 73.8 bits (37), Expect = 6e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||||||||| Sbjct: 137742 caccagggtgcactgcccagaagaggtcattccaatt 137778 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||| ||||| Sbjct: 128391 caccagggtgcactgcccagaagaggtcatttcaatt 128427 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||||||||||||||||||||| Sbjct: 122120 caccagggtgcaccgcccagaagaggtcattccaatt 122156
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 6e-10 Identities = 37/37 (100%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||||||||| Sbjct: 6906788 caccagggtgcactgcccagaagaggtcattccaatt 6906824 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||||||||||||||||||||| ||||| Sbjct: 6897437 caccagggtgcactgcccagaagaggtcatttcaatt 6897473 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||||||||||||||||||||| Sbjct: 6891166 caccagggtgcaccgcccagaagaggtcattccaatt 6891202 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||| ||||||||||||||||| Sbjct: 6919391 caccagggtgcaccgcccaaaagaggtcattccaatt 6919427
>gb|BT018164.1| Zea mays clone EL01N0556E06.c mRNA sequence Length = 979 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 572 gtccggtatgacggtctgtgaggcggacaccatctcgaagagcgggcgctcg 623 |||||||||||||||||| | ||||||||| |||||||| |||||||||||| Sbjct: 184 gtccggtatgacggtctgcgcggcggacacgatctcgaacagcgggcgctcg 133 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 207 ggtccaaacgccaccatggccccccact 234 |||||||||||||||||| ||||||||| Sbjct: 561 ggtccaaacgccaccatgaccccccact 534
>gb|BT009068.1| Triticum aestivum clone wfl1c.pk001.k16:fis, full insert mRNA sequence Length = 1540 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 |||||| ||||| ||||||||||||||||||||||||||||| Sbjct: 853 ggtctgcgaggccgacaccatctcgaagagcgggcgctcgac 812 Score = 63.9 bits (32), Expect = 6e-07 Identities = 92/112 (82%) Strand = Plus / Minus Query: 249 tcctcctccattcggcgccgttgctcatcgagcacgaagatgatggtggtgctaagcatg 308 ||||||||||| || ||||||||||| |||||||||||||| | || | || ||||||| Sbjct: 1200 tcctcctccatccgccgccgttgctcgtcgagcacgaagatcagcgtcgcgccaagcatg 1141 Query: 309 ttcccatattctcgtgcaacagtccggctcgccgccagcttcccgggctcca 360 || || || |||| || |||||||||||| ||||||||||||| |||| Sbjct: 1140 ttgccgtactctctcagcacggtccggctcgccaccagcttcccgggatcca 1089
>ref|XM_476153.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 65.9 bits (33), Expect = 1e-07 Identities = 36/37 (97%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||||||||||||||||||||| Sbjct: 931 caccagggtgcaccgcccagaagaggtcattccaatt 895
>ref|NM_195148.1| Oryza sativa (japonica cultivar-group) putative chalcone synthase (OSJNBa0051J07.20), mRNA Length = 1092 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattcca 433 ||||||||||||| |||||||||||||||||||| Sbjct: 832 caccagggtgcaccgcccagaagaggtcattcca 799 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcg 623 ||||||||| |||| ||||||||| || |||||||||||| Sbjct: 645 ggtctgtgaagcggccaccatctcaaacagcgggcgctcg 606
>gb|AC098566.3| Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence Length = 148301 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattcca 433 ||||||||||||| |||||||||||||||||||| Sbjct: 132674 caccagggtgcaccgcccagaagaggtcattcca 132707 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcg 623 ||||||||| |||| ||||||||| || |||||||||||| Sbjct: 132861 ggtctgtgaagcggccaccatctcaaacagcgggcgctcg 132900
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattcca 433 ||||||||||||| |||||||||||||||||||| Sbjct: 4985753 caccagggtgcaccgcccagaagaggtcattcca 4985786 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||||||||||||||||||||| ||||| Sbjct: 3677515 ccagggtgcactgcccagaagaggtcgttcca 3677484 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 ||||||||||||||||||||||| ||||| Sbjct: 4352231 gggtgcactgcccagaagaggtcgttcca 4352203 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcg 623 ||||||||| |||| ||||||||| || |||||||||||| Sbjct: 4985940 ggtctgtgaagcggccaccatctcaaacagcgggcgctcg 4985979
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 400 caccagggtgcactgcccagaagaggtcattcca 433 ||||||||||||| |||||||||||||||||||| Sbjct: 4986540 caccagggtgcaccgcccagaagaggtcattcca 4986573 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||||||||||||||||||||| ||||| Sbjct: 3677436 ccagggtgcactgcccagaagaggtcgttcca 3677405 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 ||||||||||||||||||||||| ||||| Sbjct: 4353052 gggtgcactgcccagaagaggtcgttcca 4353024 Score = 48.1 bits (24), Expect = 0.035 Identities = 36/40 (90%) Strand = Plus / Plus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcg 623 ||||||||| |||| ||||||||| || |||||||||||| Sbjct: 4986727 ggtctgtgaagcggccaccatctcaaacagcgggcgctcg 4986766
>ref|XM_476157.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattccaatt 436 ||||||||||||| ||||| ||||||||||||||||| Sbjct: 931 caccagggtgcaccgcccaaaagaggtcattccaatt 895
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 151516 ccggctcgccgccagcttcccgggctcca 151488 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 140597 ccggctcgccgccagcttcccgggctcca 140625 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 121327 gggtgcaccgcccagaagaggtcgttcca 121355 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcgccgccagcttcccgggc 356 |||||||||||||||||||| Sbjct: 156823 tcgccgccagcttcccgggc 156842
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 18572201 ccggctcgccgccagcttcccgggctcca 18572173 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 18561282 ccggctcgccgccagcttcccgggctcca 18561310 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 18542012 gggtgcaccgcccagaagaggtcgttcca 18542040 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcgccgccagcttcccgggc 356 |||||||||||||||||||| Sbjct: 18577508 tcgccgccagcttcccgggc 18577527
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 18731602 ccggctcgccgccagcttcccgggctcca 18731574 Score = 58.0 bits (29), Expect = 4e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 332 ccggctcgccgccagcttcccgggctcca 360 ||||||||||||||||||||||||||||| Sbjct: 18720683 ccggctcgccgccagcttcccgggctcca 18720711 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 18701413 gggtgcaccgcccagaagaggtcgttcca 18701441 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcgccgccagcttcccgggc 356 |||||||||||||||||||| Sbjct: 18736909 tcgccgccagcttcccgggc 18736928
>ref|NM_194948.1| Oryza sativa (japonica cultivar-group) putative chalcone synthase (OSJNBa0036D19.7), mRNA Length = 1197 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||||||||||||||||||||| ||||| Sbjct: 929 ccagggtgcactgcccagaagaggtcgttcca 898
>ref|XM_478473.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1200 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 574 ccggtatgacggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 ||||||||| ||||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 766 ccggtatgagcgtctgcgaggcggagaccatctcgaaaagcgggtgctcgac 715 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 180 agcaccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccactgagcc 239 |||||||| ||||| ||||| ||||| |||||||| ||| ||| ||||||||| || Sbjct: 1166 agcaccatggtctcaatggtgaaaccgggtccaaatcccagcatcaccccccactcggct 1107 Query: 240 cactctccttcctcctccattcggcgccgttgctcatcgagcacgaagat 289 | ||||||||||||||||| || | || ||||| || ||||||||||| Sbjct: 1106 ccgtctccttcctcctccatccgccttcgctgctcctccagcacgaagat 1057 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 941 gggtgcaccgcccagaagaggtcgttcca 913
>gb|AC116600.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0036D19, complete sequence Length = 126686 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||||||||||||||||||||| ||||| Sbjct: 25997 ccagggtgcactgcccagaagaggtcgttcca 25966
>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence Length = 144359 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||||||||||||||||||||| ||||| Sbjct: 110356 ccagggtgcactgcccagaagaggtcgttcca 110325
>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077J18 Length = 180944 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 574 ccggtatgacggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 ||||||||| ||||| |||||||| ||||||||||| |||||| ||||||| Sbjct: 32989 ccggtatgagcgtctgcgaggcggagaccatctcgaaaagcgggtgctcgac 33040 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 180 agcaccattgtctccatggtaaaaccaggtccaaacgccaccatggccccccactgagcc 239 |||||||| ||||| ||||| ||||| |||||||| ||| ||| ||||||||| || Sbjct: 32589 agcaccatggtctcaatggtgaaaccgggtccaaatcccagcatcaccccccactcggct 32648 Query: 240 cactctccttcctcctccattcggcgccgttgctcatcgagcacgaagat 289 | ||||||||||||||||| || | || ||||| || ||||||||||| Sbjct: 32649 ccgtctccttcctcctccatccgccttcgctgctcctccagcacgaagat 32698 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 32814 gggtgcaccgcccagaagaggtcgttcca 32842
>ref|NM_195043.1| Oryza sativa (japonica cultivar-group) putative chalcone synthase (OSJNBb0081F12.5), mRNA Length = 1032 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 ||||||||||||||||||||||| ||||| Sbjct: 761 gggtgcactgcccagaagaggtcgttcca 733
>gb|AY612781.1| Arabidopsis arenosa chalcone synthase (CHS) gene, partial cds Length = 1389 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 975 ggtctgtgcggcggacaccatctcgaaga 947
>gb|AY612780.1| Arabidopsis lyrata chalcone synthase (CHS) gene, partial cds Length = 1390 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 975 ggtctgtgcggcggacaccatctcgaaga 947
>emb|AJ868240.1| Arabidopsis croatica partial chs gene for chalcone synthase, promoter and exons 1-2 Length = 2647 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 2203 ggtctgtgcggcggacaccatctcgaaga 2175
>emb|AJ619939.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, chsAP-KM24b allele Length = 1406 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 985 ggtctgtgcggcggacaccatctcgaaga 957
>emb|AJ619938.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, chsAP-KM24a allele Length = 1406 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 985 ggtctgtgcggcggacaccatctcgaaga 957
>emb|AJ619893.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, isolate AP-Pl25 Length = 1402 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>emb|AJ619890.1| Arabidopsis lyrata subsp. lyrata partial chs gene for chalcone synthase, exons 1-2, isolate AL-TR5 Length = 1402 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>emb|AJ619889.1| Arabidopsis lyrata subsp. lyrata partial chs gene for chalcone synthase, exons 1-2, isolate AL-C16 Length = 1402 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>emb|AJ619888.1| Arabidopsis lyrata subsp. lyrata partial chs gene for chalcone synthase, exons 1-2, isolate AL-B42 Length = 1402 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>emb|AJ619887.1| Arabidopsis lyrata subsp. lyrata partial chs gene for chalcone synthase, exons 1-2, isolate AL-11-2 Length = 1147 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>emb|AJ619886.1| Arabidopsis lyrata subsp. lyrata partial chs gene for chalcone synthase, exons 1-2, isolate AL-11-1 Length = 1402 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 981 ggtctgtgcggcggacaccatctcgaaga 953
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 ||||||||||||||||||||||| ||||| Sbjct: 119772 gggtgcactgcccagaagaggtcgttcca 119744
>gb|AC090488.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0081F12 from chromosome 10, complete sequence Length = 128388 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 ||||||||||||||||||||||| ||||| Sbjct: 13839 gggtgcactgcccagaagaggtcgttcca 13811
>gb|AF112103.1|AF112103 Arabidopsis lyrata subsp. petraea isolate ApetG chalcone synthase gene, complete cds Length = 1444 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 1009 ggtctgtgcggcggacaccatctcgaaga 981
>gb|AF112100.1|AF112100 Arabidopsis lyrata chalcone synthase gene, complete cds Length = 1440 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| |||||||||||||||||||| Sbjct: 1005 ggtctgtgcggcggacaccatctcgaaga 977
>gb|BT009410.1| Triticum aestivum clone wlm96.pk061.i14:fis, full insert mRNA sequence Length = 1317 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 572 gtccggtatgacggtctgtgaggcggacaccatctcgaa 610 ||||||||| || ||||| | |||||||||||||||||| Sbjct: 732 gtccggtatcaccgtctgcgcggcggacaccatctcgaa 694 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 405 gggtgcactgcccagaagaggtcattcca 433 |||||||| |||||||||||||| ||||| Sbjct: 902 gggtgcaccgcccagaagaggtcgttcca 874
>ref|XM_477391.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1595 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 cggctcgccgccagcttcccgggctc 358 ||||||||||||||||| |||||||| Sbjct: 1109 cggctcgccgccagcttgccgggctc 1084 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 597 gacaccatctcgaagagcgggcgctcgac 625 ||||| |||||||| |||||||||||||| Sbjct: 836 gacactatctcgaacagcgggcgctcgac 808
>gb|AY728867.1| Zea mays cultivar B97 chalcone synthase C2-like (c2) gene, complete sequence Length = 3486 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 |||||| | |||||| || |||| |||||||||||||||||| Sbjct: 2812 ggtctgggcggcggagactatctggaagagcgggcgctcgac 2771
>gb|AY728828.1| Zea mays cultivar Mo20W chalcone synthase C2-like (c2) gene, complete sequence Length = 3542 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaagagcgggcgctcgac 625 |||||| | ||||| ||| |||| |||||||||||||||||| Sbjct: 2820 ggtctgggcggcgggcacgatctggaagagcgggcgctcgac 2779
>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01 Length = 130152 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 cggctcgccgccagcttcccgggctc 358 ||||||||||||||||| |||||||| Sbjct: 25080 cggctcgccgccagcttgccgggctc 25055 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 597 gacaccatctcgaagagcgggcgctcgac 625 ||||| |||||||| |||||||||||||| Sbjct: 24807 gacactatctcgaacagcgggcgctcgac 24779
>dbj|AK109558.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E09, full insert sequence Length = 1595 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 cggctcgccgccagcttcccgggctc 358 ||||||||||||||||| |||||||| Sbjct: 1109 cggctcgccgccagcttgccgggctc 1084 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 597 gacaccatctcgaagagcgggcgctcgac 625 ||||| |||||||| |||||||||||||| Sbjct: 836 gacactatctcgaacagcgggcgctcgac 808
>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1001_C01 Length = 90750 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Minus Query: 333 cggctcgccgccagcttcccgggctc 358 ||||||||||||||||| |||||||| Sbjct: 84053 cggctcgccgccagcttgccgggctc 84028 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 597 gacaccatctcgaagagcgggcgctcgac 625 ||||| |||||||| |||||||||||||| Sbjct: 83780 gacactatctcgaacagcgggcgctcgac 83752
>gb|AY597207.1| Zucchini yellow mosaic virus isolate Hefei coat protein mRNA, partial cds Length = 840 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>ref|XM_478252.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1726 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 ccatctcgaagagcgggcgctcgac 625 |||||||||| |||||||||||||| Sbjct: 928 ccatctcgaacagcgggcgctcgac 904
>gb|AY728862.1| Zea mays cultivar IL101 chalcone synthase C2-like (c2) gene, complete sequence Length = 3564 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 593 ggcggacaccatctcgaagagcgggcgctcgac 625 ||||| ||| |||| |||||||||||||||||| Sbjct: 2850 ggcgggcactatctggaagagcgggcgctcgac 2818
>gb|AY611024.1| Zucchini yellow mosaic virus isolate China 99/246 from squash polyprotein gene, partial cds Length = 1180 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 886 tggtggcaacatttccatcaaggcc 862
>gb|AY611023.1| Zucchini yellow mosaic virus isolate China 193/90 from squash polyprotein gene, partial cds Length = 1166 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 892 tggtggcaacatttccatcaaggcc 868
>gb|AY611022.1| Zucchini yellow mosaic virus isolate China 99/90 from melon polyprotein gene, partial cds Length = 1186 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 892 tggtggcaacatttccatcaaggcc 868
>gb|AY611021.1| Zucchini yellow mosaic virus isolate China 99/90 from pumpkin polyprotein gene, partial cds Length = 1176 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 910 tggtggcaacatttccatcaaggcc 886
>gb|AY188994.1| Zucchini yellow mosaic virus strain B*, complete genome Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>gb|AY279000.1| Zucchini yellow mosaic virus strain KR-PS complete genome Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>gb|AY278999.1| Zucchini yellow mosaic virus strain KR-PE complete genome Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>gb|AY278998.1| Zucchini yellow mosaic virus strain KR-PA complete genome Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>emb|AJ251527.1|ZYE251527 Zucchini yellow mosaic virus gene for polyprotein (contains partial NIb and coat protein coding sequences), isolate 10 Length = 1390 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1061 tggtggcaacatttccatcaaggcc 1037
>emb|AJ459956.1|ZYE459956 Zucchini yellow mosaic virus partial CP gene for coat protein, isolate H272-8, genomic RNA Length = 837 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>emb|AJ459955.1|ZYE459955 Zucchini yellow mosaic virus partial CP gene for coat protein, isolate H272-5, genomic RNA Length = 837 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>emb|AJ459954.1|ZYE459954 Zucchini yellow mosaic virus partial CP gene for coat protein, isolate H266-2, genomic RNA Length = 837 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|DQ062431.1| Arabidopsis halleri subsp. gemmifera ecotype UME-3 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062430.1| Arabidopsis halleri subsp. gemmifera ecotype UME-3 clone a chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062429.1| Arabidopsis halleri subsp. gemmifera ecotype TOC-5 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062428.1| Arabidopsis halleri subsp. gemmifera ecotype TOC-5 clone a chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062427.1| Arabidopsis halleri subsp. gemmifera ecotype IWA 2-4 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062426.1| Arabidopsis halleri subsp. gemmifera ecotype IWA 2-4 clone a chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062425.1| Arabidopsis halleri subsp. gemmifera ecotype IWA 3-1 chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062424.1| Arabidopsis halleri subsp. gemmifera ecotype Tai-23 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062423.1| Arabidopsis halleri subsp. gemmifera ecotype Tai-23 clone a chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062422.1| Arabidopsis halleri subsp. gemmifera ecotype China-22 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062421.1| Arabidopsis halleri subsp. gemmifera ecotype China-22 clone a chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062420.1| Arabidopsis halleri subsp. gemmifera ecotype China-21 clone b chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062418.1| Arabidopsis halleri subsp. gemmifera ecotype China-20 chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>gb|DQ062417.1| Arabidopsis halleri subsp. gemmifera ecotype China-19 chalcone synthase family protein (CHS5) mRNA, complete cds Length = 1191 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 756 ggtctgggcggcggacaccatctcgaaga 728
>emb|AJ868239.1| Arabidopsis halleri subsp. gemmifera partial chs gene for chalcone synthase, promoter and exons 1-2 Length = 2427 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 1983 ggtctgggcggcggacaccatctcgaaga 1955
>emb|AJ619903.2| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-6a allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619906.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, isolate CH-7 Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619905.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, isolate CH-5 Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619904.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-6b allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619902.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-4b allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||| |||||||||||||||| Sbjct: 981 ggtctgtgcggcagacaccatctcgaaga 953
>emb|AJ619901.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-4a allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619900.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, isolate CH-3 Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619899.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-2b allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619898.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-2a allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619897.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-1b allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619896.1| Arabidopsis halleri partial chs gene for chalcone synthase, exons 1-2, chsCH-1a allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||| | |||||||||||||||||||| Sbjct: 981 ggtctgggcggcggacaccatctcgaaga 953
>emb|AJ619895.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, chsAP-S1b allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||||||||||||||||||| Sbjct: 981 ggtctgtgcagcggacaccatctcgaaga 953
>emb|AJ619894.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, chsAP-S1a allele Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||||||||||||||||||| Sbjct: 981 ggtctgtgcagcggacaccatctcgaaga 953
>emb|AJ619892.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, isolate AP-MJ24 Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||||||||||||||||||| Sbjct: 981 ggtctgtgcagcggacaccatctcgaaga 953
>emb|AJ619891.1| Arabidopsis lyrata subsp. petraea partial chs gene for chalcone synthase, exons 1-2, isolate AP-B1 Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||||||||||||||||||| Sbjct: 981 ggtctgtgcagcggacaccatctcgaaga 953
>emb|AJ429071.1|ZYE429071 Zucchini yellow mosaic virus polyprotein gene, strain A, genomic RNA Length = 5962 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 5668 tggtggcaacatttccatcaaggcc 5644
>emb|AJ316229.2|ZYE316229 Zucchini yellow mosaic virus gene for polyprotein, genomic RNA, isolate WG Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>emb|AJ316228.2|ZYE316228 Zucchini yellow mosaic virus gene for polyprotein, genomic RNA, isolate SG Length = 9592 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>dbj|AB188116.1| Zucchini yellow mosaic virus genomic RNA, complete genome, isolate:2002 Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>dbj|AB188115.1| Zucchini yellow mosaic virus genomic RNA, complete genome, isolate:Z5-1 Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>gb|AF513551.1| Zucchini yellow mosaic virus isolate ningbo coat protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AF513550.1| Zucchini yellow mosaic virus isolate shangyu coat protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AC010296.6| Homo sapiens chromosome 5 clone CTB-155H23, complete sequence Length = 134349 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 237 gcccactctccttcctcctcc 257 ||||||||||||||||||||| Sbjct: 63475 gcccactctccttcctcctcc 63495
>gb|AF486823.1| Zucchini yellow mosaic virus isolate hainan coat protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AY074810.1| Zucchini yellow mosaic virus isolate Ningbo coat protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AY074809.1| Zucchini yellow mosaic virus isolate Beijing coat protein gene, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AF127929.2|AF127929 Zucchini yellow mosaic virus isolate TW-TN3 complete genome Length = 9591 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9298 tggtggcaacatttccatcaaggcc 9274
>gb|AF435425.1|AF435425 Zucchini yellow mosaic virus coat protein gene, partial cds Length = 1052 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>gb|AF308732.1|AF308732 Zucchini yellow mosaic virus polyprotein mRNA, partial cds Length = 395 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 182 tggtggcaacatttccatcaaggcc 158
>gb|AF014811.2|AF014811 Zucchini yellow mosaic potyvirus polyprotein gene, complete cds Length = 9606 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9312 tggtggcaacatttccatcaaggcc 9288
>gb|AC008431.5|AC008431 Homo sapiens chromosome 5 clone CTC-311C22, complete sequence Length = 118947 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcccactctccttcctcctcc 257 ||||||||||||||||||||| Sbjct: 4552 gcccactctccttcctcctcc 4532
>gb|AY995216.1| Zucchini yellow mosaic virus polyprotein gene, partial cds Length = 1694 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1384 tggtggcaacatttccatcaaggcc 1360
>gb|AF112104.1|AF112104 Arabidopsis lyrata subsp. petraea isolate CpetS chalcone synthase gene, complete cds Length = 1439 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||||||||||||||||||| Sbjct: 1004 ggtctgtgcagcggacaccatctcgaaga 976
>gb|AF112095.1|AF112095 Arabidopsis halleri chalcone synthase gene, complete cds Length = 1442 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 584 ggtctgtgaggcggacaccatctcgaaga 612 |||||||| ||| |||||||||||||||| Sbjct: 1007 ggtctgtgcggcagacaccatctcgaaga 979
>gb|AY170323.1| Zucchini yellow mosaic virus coat protein gene, partial cds Length = 660 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 373 tggtggcaacatttccatcaaggcc 349
>gb|AF062518.1|AF062518 Zucchini yellow mosaic virus polyprotein gene, partial cds Length = 1186 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 892 tggtggcaacatttccatcaaggcc 868
>gb|AC018752.4|AC018752 Homo sapiens chromosome 5 clone CTC-339F2, complete sequence Length = 206691 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 gcccactctccttcctcctcc 257 ||||||||||||||||||||| Sbjct: 4552 gcccactctccttcctcctcc 4532
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 601 ccatctcgaagagcgggcgctcgac 625 |||||||||| |||||||||||||| Sbjct: 153297 ccatctcgaacagcgggcgctcgac 153321 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 402 ccagggtgcactgcccagaagaggtcattcca 433 |||||||| || |||||||||||||| ||||| Sbjct: 131437 ccagggtggacggcccagaagaggtccttcca 131468
>emb|X62662.1|ZYMVCP Zucchini yellow mosaic virus (ZYMV-S) mRNA for coat protein Length = 1250 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 955 tggtggcaacatttccatcaaggcc 931
>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1112_F06 Length = 104419 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 601 ccatctcgaagagcgggcgctcgac 625 |||||||||| |||||||||||||| Sbjct: 21195 ccatctcgaacagcgggcgctcgac 21219
>dbj|AK110924.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D05, full insert sequence Length = 1726 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 601 ccatctcgaagagcgggcgctcgac 625 |||||||||| |||||||||||||| Sbjct: 928 ccatctcgaacagcgggcgctcgac 904
>gb|AY917146.1| Zucchini yellow mosaic virus isolate G3H coat protein gene, partial cds; and 3' UTR Length = 645 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 356 tggtggcaacatttccatcaaggcc 332
>gb|AF127934.1|AF127934 Zucchini yellow mosaic virus isolate TW-PT5 polyprotein gene, partial cds Length = 1105 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 813 tggtggcaacatttccatcaaggcc 789
>gb|AF127932.1|AF127932 Zucchini yellow mosaic virus isolate TW-TNML1 polyprotein gene, partial cds Length = 1105 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 813 tggtggcaacatttccatcaaggcc 789
>gb|AF127931.1|AF127931 Zucchini yellow mosaic virus isolate TW-TC1 polyprotein gene, partial cds Length = 1106 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 813 tggtggcaacatttccatcaaggcc 789
>emb|AJ316227.1|ZYE316227 Zucchini yellow mosaic virus genomic RNA for partial polyprotein, isolate P Length = 1683 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1390 tggtggcaacatttccatcaaggcc 1366
>dbj|D13914.1|ZYMCP Zucchini yellow mosaic virus gene for nuclear inclusion protein and coat protein Length = 1944 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1650 tggtggcaacatttccatcaaggcc 1626
>emb|AJ420020.1|ZYE420020 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Italy 1 Length = 1130 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 854 tggtggcaacatttccatcaaggcc 830
>emb|AJ420019.1|ZYE420019 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Berlin 1 Length = 1130 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 857 tggtggcaacatttccatcaaggcc 833
>emb|AJ420018.1|ZYE420018 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Slovenia 1 Length = 1120 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 844 tggtggcaacatttccatcaaggcc 820
>emb|AJ420017.1|ZYE420017 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 12 Length = 1133 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 857 tggtggcaacatttccatcaaggcc 833
>emb|AJ420016.1|ZYE420016 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 11 Length = 1134 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 857 tggtggcaacatttccatcaaggcc 833
>emb|AJ420015.1|ZYE420015 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 10 Length = 1133 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 857 tggtggcaacatttccatcaaggcc 833
>emb|AJ420014.1|ZYE420014 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 6 Length = 1120 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 851 tggtggcaacatttccatcaaggcc 827
>emb|AJ420013.1|ZYE420013 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 5 Length = 1124 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 854 tggtggcaacatttccatcaaggcc 830
>emb|AJ420012.1|ZYE420012 Zucchini yellow mosaic virus genomic RNA for polyprotein gene, NIb protein and coat protein region, isolate Austria 2 Length = 1132 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 857 tggtggcaacatttccatcaaggcc 833
>gb|L31350.1|ZYMPROPOLR Zucchini yellow mosaic virus polyprotein, complete cds; P1 protease; P2 HC-protease; cylindrical inclusion protein; protease; replicase; capsid protein Length = 9593 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 9299 tggtggcaacatttccatcaaggcc 9275
>gb|M35095.1|ZYMCPA Zucchini yellow mosaic virus coat protein (cp) mRNA, 3' end Length = 1374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1081 tggtggcaacatttccatcaaggcc 1057
>dbj|AB004641.1| Zucchini yellow mosaic virus genomic RNA for polyprotein (POL/COP region), partial cds, strain: M Length = 1172 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 889 tggtggcaacatttccatcaaggcc 865
>dbj|AB004640.1| Zucchini yellow mosaic virus genomic RNA for polyprotein (POL/COP region), partial cds, strain 169 Length = 1172 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 889 tggtggcaacatttccatcaaggcc 865
>dbj|D00692.1|ZYMV Zucchini yellow mosaic virus gene for polyprotein precursor, partial cds Length = 1546 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 1252 tggtggcaacatttccatcaaggcc 1228
>dbj|AB063251.1| Zucchini yellow mosaic virus CP gene for coat protein, partial cds Length = 840 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 511 tggtggaaacatttccatcaaggcc 535 |||||| |||||||||||||||||| Sbjct: 757 tggtggcaacatttccatcaaggcc 733
>ref|NM_116221.1| Arabidopsis thaliana acyltransferase AT4G00040 mRNA, complete cds Length = 1366 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 948 caccaggatgaactgcccagaaaaggtcattc 917
>ref|NM_111867.3| Arabidopsis thaliana unknown protein AT3G10320 mRNA, complete cds Length = 1847 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 596 cactctccttcctcctccat 615
>gb|AC123720.32| Mus musculus chromosome 10, clone RP23-413G8, complete sequence Length = 192037 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 acaatgaagtgctatttttt 157 |||||||||||||||||||| Sbjct: 161514 acaatgaagtgctatttttt 161533
>gb|AC101776.7| Mus musculus chromosome 7, clone RP24-118K20, complete sequence Length = 177972 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 agatgatggtggtgctaagc 305 |||||||||||||||||||| Sbjct: 35793 agatgatggtggtgctaagc 35812
>gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, complete sequence Length = 214157 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ctctccttcctcctccattc 261 |||||||||||||||||||| Sbjct: 28785 ctctccttcctcctccattc 28804
>gb|AC023174.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-25N12, complete sequence Length = 223266 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 acttcctttatgaagcatct 41 |||||||||||||||||||| Sbjct: 90038 acttcctttatgaagcatct 90057
>gb|AC116480.10| Mus musculus chromosome 12, clone RP23-398M9, complete sequence Length = 194708 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 attccaattgacctccatgc 447 |||||||||||||||||||| Sbjct: 126328 attccaattgacctccatgc 126347
>gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosome 7, complete sequence Length = 232568 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 agatgatggtggtgctaagc 305 |||||||||||||||||||| Sbjct: 14857 agatgatggtggtgctaagc 14838
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence, complete sequence Length = 87937 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 34201 cactctccttcctcctccat 34220
>gb|AC084287.9| Mus Musculus S train C57BL6/J chromosome 1 BAC, RP23-145H3 Complete Sequence, complete sequence Length = 201429 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 atatattttggtagatagtt 21 |||||||||||||||||||| Sbjct: 94786 atatattttggtagatagtt 94805
>gb|AC126050.3| Mus musculus BAC clone RP23-236L17 from 1, complete sequence Length = 143097 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 atatattttggtagatagtt 21 |||||||||||||||||||| Sbjct: 70066 atatattttggtagatagtt 70047
>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete sequence Length = 175487 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 cccactctccttcctcctcc 257 |||||||||||||||||||| Sbjct: 41034 cccactctccttcctcctcc 41053
>gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complete sequence Length = 121110 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ctctccttcctcctccattc 261 |||||||||||||||||||| Sbjct: 64174 ctctccttcctcctccattc 64155
>gb|AC044873.13| Homo sapiens chromosome 18, clone RP11-715C4, complete sequence Length = 179454 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 gagcccactctccttcctcctcca 258 ||||||| |||||||||||||||| Sbjct: 137298 gagcccagtctccttcctcctcca 137275
>emb|AL161471.2|ATCHRIV1 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1 Length = 197119 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 14661 caccaggatgaactgcccagaaaaggtcattc 14630
>gb|BT008463.1| Arabidopsis thaliana At4g00040 gene, complete cds Length = 1158 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 922 caccaggatgaactgcccagaaaaggtcattc 891
>emb|CR932803.1| Mus musculus chromosome 2, clone GenSys-110A4 strain 129/Sv, complete sequence Length = 134122 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 atgaagtgctattttttctt 160 |||||||||||||||||||| Sbjct: 95374 atgaagtgctattttttctt 95355
>emb|AL928860.10| Mouse DNA sequence from clone RP23-5I15 on chromosome 2, complete sequence Length = 132808 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 atgaagtgctattttttctt 160 |||||||||||||||||||| Sbjct: 87143 atgaagtgctattttttctt 87124
>gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, complete sequence Length = 166525 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 ccgccagcttcccgggctccaact 363 ||||||||||||| |||||||||| Sbjct: 71300 ccgccagcttcccaggctccaact 71323
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 ctcgaagagcgggcgctcga 624 |||||||||||||||||||| Sbjct: 171973 ctcgaagagcgggcgctcga 171992
>gb|AC016098.8| Homo sapiens, clone RP11-25P13, complete sequence Length = 156275 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 340 ccgccagcttcccgggctccaact 363 ||||||||||||| |||||||||| Sbjct: 100308 ccgccagcttcccaggctccaact 100285
>gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosome 9, complete sequence Length = 154654 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 caggcactgcttgatgttgt 489 |||||||||||||||||||| Sbjct: 106458 caggcactgcttgatgttgt 106439
>gb|BT006103.1| Arabidopsis thaliana clone U20107 unknown protein (At3g10320) mRNA, complete cds Length = 1516 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 361 cactctccttcctcctccat 380
>emb|BX822426.1|CNS0A736 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZC04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1764 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 543 cactctccttcctcctccat 562
>emb|BX822254.1|CNS0A72U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1721 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 544 cactctccttcctcctccat 563
>emb|BX823168.1|CNS0A4V4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB95ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1617 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 469 cactctccttcctcctccat 488
>emb|BX826846.1|CNS0A3C0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZG11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1334 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 1003 caccaggatgaactgcccagaaaaggtcattc 972
>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence Length = 187289 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcactgcccagaagaggtca 428 |||||||||||||||||||| Sbjct: 81378 gcactgcccagaagaggtca 81397
>gb|BT005786.1| Arabidopsis thaliana clone RAFL14-87-G18 (R20107) unknown protein (At3g10320) mRNA, complete cds Length = 1860 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 cactctccttcctcctccat 259 |||||||||||||||||||| Sbjct: 596 cactctccttcctcctccat 615
>gb|AY086158.1| Arabidopsis thaliana clone 21877 mRNA, complete sequence Length = 1366 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 948 caccaggatgaactgcccagaaaaggtcattc 917
>ref|XM_313571.2| Anopheles gambiae str. PEST ENSANGP00000003489 (ENSANGG00000002793), mRNA Length = 1975 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 ctccttcctcctccattcgg 263 |||||||||||||||||||| Sbjct: 519 ctccttcctcctccattcgg 500
>gb|BT001993.1| Arabidopsis thaliana Unknown protein (At4g00040) mRNA, complete cds Length = 2259 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 1885 caccaggatgaactgcccagaaaaggtcattc 1854
>gb|U60902.1|OCU60902 Otolemur crassicaudatus epsilon-, gamma-, delta-, and beta-globin genes, complete cds, and eta-globin pseudogene Length = 57113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aatgaagtgctattttttct 159 |||||||||||||||||||| Sbjct: 33737 aatgaagtgctattttttct 33756
>gb|AF069299.1|F6N15 Arabidopsis thaliana BAC F6N15 Length = 95643 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 400 caccagggtgcactgcccagaagaggtcattc 431 ||||||| || ||||||||||| ||||||||| Sbjct: 9523 caccaggatgaactgcccagaaaaggtcattc 9492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,858,784 Number of Sequences: 3902068 Number of extensions: 4858784 Number of successful extensions: 98736 Number of sequences better than 10.0: 171 Number of HSP's better than 10.0 without gapping: 173 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98090 Number of HSP's gapped (non-prelim): 644 length of query: 625 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 602 effective length of database: 17,143,297,704 effective search space: 10320265217808 effective search space used: 10320265217808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
