>AN32A_HUMAN (P39687) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member A (Potent heat-stable protein phosphatase 2A
           inhibitor I1PP2A) (Acidic nuclear phosphoprotein pp32)
           (Cerebellar leucine-rich acidic nuclear protein)
           (HLA-DR-associated prote
          Length = 249

 Score = 36.6 bits (83), Expect = 0.072
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 212 DGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQAYGDADDEPRAPEGV 391
           DG DR D+E  D+D    + G +EGL +     D   E+   D Q   D +DE    EG 
Sbjct: 146 DGYDRDDKEAPDSD----AEGYVEGLDDE--EEDEDEEEYDEDAQVVEDEEDEDEEEEGE 199

Query: 392 REDAGGDRRQEDQ 430
            ED  G+  ++++
Sbjct: 200 EEDVSGEEEEDEE 212

>T2FA_DROME (Q05913) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription factor 5 large
           chain) (TF5A)
          Length = 577

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
 Frame = +2

Query: 65  TSPRQFIKHSTGTSSHGFIDAKSLYQSSHDER*NSDRGTAGTSLQEPHHDGPDRVDEEQE 244
           T   ++I     + S    D K   Q   D+     +G  G   ++   D  D   EE +
Sbjct: 238 TDMDEWIDSEDESDSEDEEDKKKKEQEDSDDGKAKGKGKKGADKKKKKRDVDDEAFEESD 297

Query: 245 DADGVGPSIGL----LEGLLEAS*RLDVLVEQVAPDDQ------AYGDADDEPRAPEGVR 394
           D D  G  +       E   +   ++D  ++ VA +D       +  + DDE ++ E  +
Sbjct: 298 DGDEEGREMDYDTSSSEDEPDPEAKVDKDMKGVAEEDALRKLLTSDEEEDDEKKSDESDK 357

Query: 395 EDAGGDRRQEDQ 430
           EDA G+++++D+
Sbjct: 358 EDADGEKKKKDK 369

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 329 VAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNER 502
           V+ DD+ Y  +  E R  +  RE+ G  R ++  R R     R+ +R+E  +D + ER
Sbjct: 228 VSDDDRGYRQSSREERDRKSSREEGGRSRSRDRYRNRSRERYRDRSREERSRDRSRER 285

>SPB4_ASPOR (Q2UBZ5) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)|
          Length = 638

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
 Frame = +2

Query: 338 DDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATN 517
           DD  Y D   E R  E ++E   GD  QE    R+       + K    D  N++     
Sbjct: 518 DDYKYKDKQREKRRIELLQESKEGDGTQESSNKRKATETTAWSNK---LDDRNKKQK--- 571

Query: 518 LPPYKGEEQRRHGEENVWD---QETRQHV--------GLPVRLVQHQEIYGGGEGEPLEK 664
               + E+++R  E+N W+   +E RQ +         + V+  + + +   G+ E    
Sbjct: 572 ----RREQKQRRQEKNKWEKMTEEERQKIRETEQMVESIRVKNEEERRLRRAGKAEAANA 627

Query: 665 GADE 676
           G DE
Sbjct: 628 GKDE 631

>LIN10_CAEEL (O17583) Protein lin-10 (Abnormal cell lineage protein 10)|
          Length = 982

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +2

Query: 143 SSHDER*NSDRGTAGTSLQE---PHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLD 313
           SSH    ++ R TAG+ +     P+H        E   A+    + G+++   E      
Sbjct: 133 SSHRSEDDNGRQTAGSVVSSNVSPNH-------REVRPAEDSTETSGVVQNNDE------ 179

Query: 314 VLVEQVAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQR 433
           +LV      D   GD  ++  +PE  +E AGG+ + E++R
Sbjct: 180 LLVPTSTSSDVTIGDVIEKSDSPENSQESAGGEEKSEEKR 219

>CRED_ECOLI (P08369) Inner membrane protein creD|
          Length = 450

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/40 (47%), Positives = 22/40 (55%)
 Frame = -3

Query: 311 QGVRRPQGGLPEGQWMVQHHRHPPALHLPGLGHRDVVPVG 192
           QGV  P   LPEG W  Q+ +   AL+L G G   VVP G
Sbjct: 179 QGVHIP---LPEGDWRKQNLKLNMALNLSGTGDLSVVPGG 215

>NSD1_MOUSE (O88491) Histone-lysine N-methyltransferase, H3 lysine-36 and H4|
            lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase)
            (H4-K20-HMTase) (Nuclear receptor binding SET domain
            containing protein 1) (NR-binding SET domain containing
            protein)
          Length = 2588

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
 Frame = +3

Query: 261  DHPLAFWKASLRPPDALMCSWSR*HPMTRHTATPMMSHEPLKVSAKMLGATAVRRIREPG 440
            D P A      +PPD       R  PMTR +++P +S  PL+   +M  +   + I    
Sbjct: 2215 DRPPAKEGPRPQPPD-------RASPMTRPSSSPSVSSLPLERPLRMTDSRLDKSIGAAS 2267

Query: 441  SSSQ-------SGKWRGKNSRRTTTTNAIQLPISPLIKEKSREGMVKKMYGTKRPVSMLV 599
              SQ       S   R  +  R  TTN+ +  IS    EKS   + +++   ++ +S +V
Sbjct: 2268 PKSQAVEKTPASTGLRLSSPDRLLTTNSPKPQISDRPPEKSHASLTQRLPPPEKVLSAVV 2327

Query: 600  FQFV 611
               V
Sbjct: 2328 QSLV 2331

>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase|
           substrate
          Length = 760

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -3

Query: 416 GGRPQHLRGHLQGLVAHHRRRRMPGHRVLPAPRAHQGVRRPQGGLPEGQWMVQHHRHPPA 237
           G +PQ + G     +   + +++PG +    P     V++PQ     G  M+Q H+ PPA
Sbjct: 659 GQQPQQIPGQQPQQIPGQQPQQIPGQQPQQIP-----VQQPQPQPQMGHVMLQQHQAPPA 713

Query: 236 LHLP 225
              P
Sbjct: 714 AQAP 717

>HNRL1_HUMAN (Q9BUJ2) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
           (Adenovirus early region 1B-associated protein 5)
           (E1B-55 kDa-associated protein 5) (E1B-AP5)
          Length = 856

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 293 EAS*RLDVLVEQVAPDDQAYGDADDEPRAPEGVRED 400
           E + RL   +E   PDD+   DADDEP  P  + E+
Sbjct: 28  ELAERLQAALEAEEPDDERELDADDEPGRPGHINEE 63

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 25/110 (22%), Positives = 44/110 (40%)
 Frame = +2

Query: 212 DGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQAYGDADDEPRAPEGV 391
           D  D  D+ +E+A    P+ G      +A+  + V  + VA D+    D +DE    +  
Sbjct: 198 DDDDEEDDSEEEAMETTPAKGK-----KAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDED 252

Query: 392 REDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATNLPPYKGEE 541
            ED   D   E++   +  P++E   K   +    +  P       +G E
Sbjct: 253 DEDEDDDDEDEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTE 302

>VNS2_BTV1X (P10350) Nonstructural protein NS2|
          Length = 357

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
 Frame = +2

Query: 320 VEQVAPDDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVAR------KE*P 481
           V+ VAP +++    DDE +  E  RE   G  R E  R  +    +EVA        E  
Sbjct: 173 VQSVAPREESRWMDDDEAKVDEEAREMIPGTSRLEKLREARSNVFKEVAAGINWNLDEKD 232

Query: 482 QDHNNERDPATNLPPYKGEEQRRHGEENVWDQETRQHV 595
           ++  +ER+    +     ++++  GE+   D+  + H+
Sbjct: 233 EEDGDEREDEERVKTLSDDDEQ--GEDASDDEHPKTHI 268

>YNJ1_YEAST (P53935) Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic|
           region
          Length = 1240

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 4/117 (3%)
 Frame = +2

Query: 338 DDQAYGDADDEPRAPEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATN 517
           D++ Y D  +     E V E  G +  ++ +   +   IRE        DH  +     N
Sbjct: 463 DEEDYDDYSEYAEDSEEVSEYEGIEAVEKPEHDEKSNGIRETLHLSYDHDHKRQ-----N 517

Query: 518 LPPYKGEEQRRHGEENVWDQETRQHVGLPVRLVQH----QEIYGGGEGEPLEKGADE 676
            P +       H E+ + ++E    + LP    +H     +I  G E EP E+  +E
Sbjct: 518 HPHHHYHSTSTHSEDELSEEEYISDIELPHDPHKHFHRDDDILDGDEDEPEEEDENE 574

>SHK1_SCHPO (P50527) Serine/threonine-protein kinase pak1/shk1 (EC 2.7.11.1)|
          Length = 658

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 336 PMTRHTATPMMSH-EPLKVSAKMLGATAVRRIREPGSSSQSGKWRGKNSRRTTTTNAIQL 512
           P+   +A    SH +P   ++        R    P +SS S       + +TTT+NA + 
Sbjct: 226 PLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQ 285

Query: 513 PISPLIKEKSREGMVK 560
           P SPL+  KS + +++
Sbjct: 286 P-SPLVSSKSTDNIIR 300

>ABTAP_MOUSE (Q3V1V3) ABT1-associated protein|
          Length = 845

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +2

Query: 122 DAKSLYQSSHDER*NSDRGTAGTSLQEPHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS 301
           D +S  +   D + ++D   +    +E   D  +  +EE+ED    GP +   +G +E S
Sbjct: 247 DEESEDEIISDGKTSADEDESEEEDEEEEEDSEEEEEEEEEDESDSGPDLARGKGNVETS 306

Query: 302 *RLDVLVEQVAPDDQAYGDA-----DDEPRAPEGVR 394
              +  +  + P++  +  A      D PRA E  R
Sbjct: 307 SEDEDDLADLFPEEPGFEHAWRELDKDAPRADEITR 342

>LEGA_PEA (P02857) Legumin A precursor [Contains: Legumin A alpha chain|
           (Legumin A acidic chain); Legumin A beta chain (Legumin
           A basic chain)]
          Length = 517

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 380 PEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATNLPPYKGEEQRRHGE 559
           PE       G R++ED+   +    +  +R+E  +D + ER P           QRR GE
Sbjct: 259 PEKQARHQRGSRQEEDEDEEKQPRHQRGSRQEEEEDEDEERQP---------RHQRRRGE 309

Query: 560 ENVWDQETR 586
           E   D++ R
Sbjct: 310 EEEEDKKER 318

>VIRD4_AGRT5 (P18594) Protein virD4|
          Length = 668

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 230 DEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQAYGDA 361
           DE +EDA GV P  G+   +  A      L+EQ+    Q YG A
Sbjct: 619 DEVKEDAGGVVPDFGVSAEMAPAMIAQQQLLEQIIALQQRYGPA 662

>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle|
           protein) (Paired helical filament-tau) (PHF-tau)
          Length = 751

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
 Frame = +2

Query: 137 YQSSHDER*NSDRGTAGTSLQEPHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDV 316
           Y    D+  + D G   +  Q P  DG +    E  DA     +  +   L         
Sbjct: 17  YTMLQDQEGDMDHGLKESPPQPPADDGSEEPGSETSDAKSTPTAEDVTAPL--------- 67

Query: 317 LVEQVAPDDQAYGDADDEPRAPEG-VREDAG-GDR-RQEDQRA 436
            VE+ APD QA   A      PEG   E+AG GD    EDQ A
Sbjct: 68  -VEERAPDKQA--TAQSHTEIPEGTTAEEAGIGDTPNMEDQAA 107

>SA190_YEAST (P36123) SIT4-associating protein SAP190|
          Length = 1033

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 122 DAKSLYQSSHDER*NSDRGTAGTSLQEPHH 211
           D  SLY   +DE   SD+ T+GTSL  P H
Sbjct: 878 DGNSLYNEDNDEN-GSDKWTSGTSLFPPDH 906

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 24/115 (20%), Positives = 47/115 (40%)
 Frame = +2

Query: 197 QEPHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQAYGDADDEPR 376
           ++   D  D  D+ +E+A    P+ G      +A+  + V  + VA D+    D +DE  
Sbjct: 192 EDDEDDDDDEEDDSEEEAMETTPAKGK-----KAAKVVPVKAKNVAEDEDEEEDDEDEDD 246

Query: 377 APEGVREDAGGDRRQEDQRARQL*PIREVARKE*PQDHNNERDPATNLPPYKGEE 541
             +   ED   +  +E++   +  P++E   K   +    +  P       +G E
Sbjct: 247 DDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTE 301

>RL32_HALSA (Q9HPB7) 50S ribosomal protein L32e (HL5)|
          Length = 238

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = +2

Query: 236 EQEDADGVGPSIGLL----EGLLEAS*RLDVLVEQVAPDDQAYGDADDEPRAPEGVREDA 403
           E  +ADG+G ++        G LE     D  VE+V  DD+A  DAD E         + 
Sbjct: 42  ELAEADGIGNALAARIKADVGGLEVEADTDAEVEEVGGDDEADTDADVETELRARGLTEK 101

Query: 404 GGDRRQEDQRARQ 442
             D  +++QR  Q
Sbjct: 102 TPDLSEDEQRLLQ 114

>SPB1_USTMA (Q4P6G5) AdoMet-dependent rRNA methyltransferase SPB1 (EC 2.1.1.-)|
           (2'-O-ribose RNA methyltransferase)
           (S-adenosyl-L-methionine-dependent methyltransferase)
          Length = 921

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 26/76 (34%), Positives = 32/76 (42%)
 Frame = +2

Query: 200 EPHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQAYGDADDEPRA 379
           E   D  D  +EEQ+D D    S   +EG  E     D   E V P DQ      DE   
Sbjct: 646 EDDQDDEDAWEEEQDDEDDAEESDSEVEGEQEVE---DDDFE-VVPQDQEEHAIPDEEWD 701

Query: 380 PEGVREDAGGDRRQED 427
             G  E+AG  +R +D
Sbjct: 702 LNGEDEEAGKQKRIKD 717

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 24/92 (26%), Positives = 37/92 (40%)
 Frame = +2

Query: 167 SDRGTAGTSLQEPHHDGPDRVDEEQEDADGVGPSIGLLEGLLEAS*RLDVLVEQVAPDDQ 346
           S + T+  + +E H D       + E  D  G   G  EGL E S  ++  +E     D+
Sbjct: 71  SGKTTSRKAWKEDHWDQTLPSSSDNEIPDEGGSEAGDSEGLEELSEDVEEDLEDNEIPDE 130

Query: 347 AYGDADDEPRAPEGVREDAGGDRRQEDQRARQ 442
              +  D     E + ED   D   ED+  R+
Sbjct: 131 GGSEDGDSEGLEEEISEDVEEDLEGEDEEDRE 162

>LEU22_BRAJA (Q89X34) 3-isopropylmalate dehydratase large subunit 2 (EC|
           4.2.1.33) (Isopropylmalate isomerase 2) (Alpha-IPM
           isomerase 2) (IPMI 2)
          Length = 468

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 329 VAPDDQAYGDADDEPRAPEGVREDA 403
           VAPD +AY    D P+AP+G   DA
Sbjct: 235 VAPDQKAYDFLRDRPKAPKGAAWDA 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,788,846
Number of Sequences: 219361
Number of extensions: 2085690
Number of successful extensions: 7081
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7066
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)