Clone Name | rbasd14g11 |
---|---|
Clone Library Name | barley_pub |
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 390 cgagctggaggtgcaggaggccatcaatg 418 ||||| ||||||||||| ||||||||||| Sbjct: 623710 cgagcaggaggtgcaggcggccatcaatg 623682
>emb|X69969.1|CRALDCHL C.reinhardtii mRNA for fructose-1,6-bisphosphate aldolase Length = 1737 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 ctggaggtgcaggaggccatc 414 ||||||||||||||||||||| Sbjct: 722 ctggaggtgcaggaggccatc 742
>gb|AC117412.6| Homo sapiens 3 BAC RP11-52L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 52982 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 aacaacaacagttgctgttga 307 ||||||||||||||||||||| Sbjct: 21091 aacaacaacagttgctgttga 21111
>gb|S72951.1| Chlamydomonas reinhardtii fructosediphophate aldolase gene, complete cds; and unknown gene; nuclear genes for chloroplast products Length = 1717 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 ctggaggtgcaggaggccatc 414 ||||||||||||||||||||| Sbjct: 721 ctggaggtgcaggaggccatc 741
>gb|AC019211.6| Homo sapiens BAC clone RP11-454J11 from 2, complete sequence Length = 167471 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 gttgacagagggctggcgagg 323 ||||||||||||||||||||| Sbjct: 22573 gttgacagagggctggcgagg 22593
>emb|X85495.1|CRALD C.reinhardtii ald gene Length = 3676 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 ctggaggtgcaggaggccatc 414 ||||||||||||||||||||| Sbjct: 1895 ctggaggtgcaggaggccatc 1915
>ref|NM_115029.1| Arabidopsis thaliana unknown protein AT3G51700 mRNA, complete cds Length = 1256 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcaagactttctcaccatga 255 |||||||||||||||||||| Sbjct: 756 tcaagactttctcaccatga 737
>gb|AC169984.2| Mus musculus BAC clone RP23-450I9 from chromosome 6, complete sequence Length = 181976 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggaggtgcaggaggccatca 415 |||||||||||||||||||| Sbjct: 107025 ggaggtgcaggaggccatca 107044
>ref|XM_710986.1| Candida albicans SC5314 agglutinin-like ALS6 protein (CaO19_7414), mRNA Length = 4101 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 caacaacaacagttgctgtt 305 |||||||||||||||||||| Sbjct: 1189 caacaacaacagttgctgtt 1170
>gb|BC028927.1| Mus musculus exocyst complex component 7, mRNA (cDNA clone MGC:30390 IMAGE:4208803), complete cds Length = 2102 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 575 cgagctggaggtgcaggagg 594
>gb|AC121894.2| Mus musculus BAC clone RP24-157H5 from 6, complete sequence Length = 148613 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ggaggtgcaggaggccatca 415 |||||||||||||||||||| Sbjct: 2368 ggaggtgcaggaggccatca 2387
>ref|XM_773522.1| Giardia lamblia ATCC 50803 protein kinase (GLP_111_73516_78324) partial mRNA Length = 4809 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 ctgcgtgtgcttgtgcaaaa 200 |||||||||||||||||||| Sbjct: 2533 ctgcgtgtgcttgtgcaaaa 2552
>emb|AL590105.19| Human DNA sequence from clone RP11-273H7 on chromosome 10 Contains the 5' end of the gene for protein kinase (PKE), gene KIAA1674, gene LOC170394, the 5' end of a novel gene and six CpG islands, complete sequence Length = 132772 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 gggcagttggggatggacag 341 |||||||||||||||||||| Sbjct: 23504 gggcagttggggatggacag 23523
>emb|AL132968.1|ATT18N14 Arabidopsis thaliana DNA chromosome 3, BAC clone T18N14 Length = 79867 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tcaagactttctcaccatga 255 |||||||||||||||||||| Sbjct: 60966 tcaagactttctcaccatga 60985
>emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IRF1 gene, OCTN2 gene and OCTN1 gene (partial) Length = 113629 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 agctggaggtgcaggaggcc 411 |||||||||||||||||||| Sbjct: 64399 agctggaggtgcaggaggcc 64380
>gb|AC096888.2| Homo sapiens chromosome 3 clone RP11-14D22, complete sequence Length = 176421 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 tctactctgcgctactgcgtgtgc 190 |||||||||| ||||||||||||| Sbjct: 1547 tctactctgctctactgcgtgtgc 1570
>gb|AC099500.2| Homo sapiens chromosome 19 clone RP11-209J6, complete sequence Length = 138627 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ttctcaccatgaattcgtga 263 |||||||||||||||||||| Sbjct: 111065 ttctcaccatgaattcgtga 111084
>gb|AC111149.4| Homo sapiens chromosome 8, clone RP11-434I12, complete sequence Length = 135213 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 466 ggtgcgcagaggaggcggcacggg 489 ||||||||| |||||||||||||| Sbjct: 98810 ggtgcgcagcggaggcggcacggg 98833
>dbj|AK140450.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN full-length enriched library, clone:B830030O19 product:exocyst complex component 7, full insert sequence Length = 3313 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 573 cgagctggaggtgcaggagg 592
>gb|AC103557.1| Homo sapiens chromosome 3 clone RP11-9A1, complete sequence Length = 159066 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 167 tctactctgcgctactgcgtgtgc 190 |||||||||| ||||||||||||| Sbjct: 155285 tctactctgctctactgcgtgtgc 155308
>dbj|AK167769.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730011M14 product:exocyst complex component 7, full insert sequence Length = 2083 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 582 cgagctggaggtgcaggagg 601
>dbj|AK169928.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630004J16 product:exocyst complex component 7, full insert sequence Length = 2085 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 586 cgagctggaggtgcaggagg 605
>dbj|AK162868.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230067I15 product:exocyst complex component 7, full insert sequence Length = 3738 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 585 cgagctggaggtgcaggagg 604
>dbj|AK087601.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230023C22 product:exocyst component protein 70 kDa homolog (S. cerevisiae), full insert sequence Length = 2088 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 587 cgagctggaggtgcaggagg 606
>gb|AY225310.1| Candida albicans agglutinin-like protein 6 (ALS6) gene, complete cds Length = 4101 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 caacaacaacagttgctgtt 305 |||||||||||||||||||| Sbjct: 1189 caacaacaacagttgctgtt 1170
>gb|AC139769.1| Homo sapiens chromosome 19 clone RP11-255H23, complete sequence Length = 136449 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ttctcaccatgaattcgtga 263 |||||||||||||||||||| Sbjct: 62116 ttctcaccatgaattcgtga 62135
>ref|NM_016857.1| Mus musculus exocyst complex component 7 (Exoc7), mRNA Length = 2094 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 534 cgagctggaggtgcaggagg 553
>gb|AY089206.1| Arabidopsis thaliana clone 94549 mRNA, complete sequence Length = 1256 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 tcaagactttctcaccatga 255 |||||||||||||||||||| Sbjct: 757 tcaagactttctcaccatga 738
>gb|AF075293.1|AF075293 Candida albicans strain 1161 agglutinin-like protein 6 (ALS6) gene, complete cds Length = 4332 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 caacaacaacagttgctgtt 305 |||||||||||||||||||| Sbjct: 1189 caacaacaacagttgctgtt 1170
>gb|AC138126.1| Homo sapiens chromosome 19 clone RP11-274A19, complete sequence Length = 169063 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 ttctcaccatgaattcgtga 263 |||||||||||||||||||| Sbjct: 141943 ttctcaccatgaattcgtga 141962
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ccggatctggtcggtggcgc 529 |||||||||||||||||||| Sbjct: 2042563 ccggatctggtcggtggcgc 2042544
>dbj|AK173094.1| Mus musculus premature mRNA for mKIAA1067 protein Length = 6719 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 575 cgagctggaggtgcaggagg 594
>gb|BC053710.1| Mus musculus exocyst complex component 7, mRNA (cDNA clone MGC:60517 IMAGE:30056570), complete cds Length = 2111 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 586 cgagctggaggtgcaggagg 605
>ref|XM_319833.2| Anopheles gambiae str. PEST ENSANGP00000005228 (ENSANGG00000004028), partial mRNA Length = 660 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 tcgagctggaggtgcaggag 408 |||||||||||||||||||| Sbjct: 464 tcgagctggaggtgcaggag 483
>gb|AC159985.2| Gallus gallus BAC clone CH261-18F10 from chromosome unknown, complete sequence Length = 211288 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 agctggaggtgcaggaggcc 411 |||||||||||||||||||| Sbjct: 197373 agctggaggtgcaggaggcc 197354
>gb|AF014461.1|AF014461 Mus musculus EXO70 protein (Exo70) mRNA, complete cds Length = 2094 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 534 cgagctggaggtgcaggagg 553
>emb|AL645861.12| Mouse DNA sequence from clone RP23-184G6 on chromosome 11, complete sequence Length = 212385 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 cgagctggaggtgcaggagg 409 |||||||||||||||||||| Sbjct: 49205 cgagctggaggtgcaggagg 49186 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,436,640 Number of Sequences: 3902068 Number of extensions: 4436640 Number of successful extensions: 69036 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68930 Number of HSP's gapped (non-prelim): 106 length of query: 660 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 637 effective length of database: 17,143,297,704 effective search space: 10920280637448 effective search space used: 10920280637448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)