ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd14g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U49482.1|HVU49482 Hordeum vulgare low temperature-responsive ... 404 e-110
2dbj|AB207971.1| Lolium perenne gene for glycine-rich RNA-binding... 42 0.73
3gb|AC122900.3| Mus musculus BAC clone RP23-39N24 from 15, comple... 40 2.9

>gb|U49482.1|HVU49482 Hordeum vulgare low temperature-responsive RNA-binding protein
           (blt801) mRNA, complete cds
          Length = 806

 Score =  404 bits (204), Expect = e-110
 Identities = 221/226 (97%), Gaps = 2/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcgaacggaacaggggaacggtaacaagtagcacggaacggtagcgtcacatctaacggt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gcgaacggaacaggggaacggtaacaagtagcacggaacggtagcgtcacatctaacggt 691

                                                                       
Query: 63  agccagagcatctcagaacctaagcgatggagcgagatctagggttactcgggagcgagc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 agccagagcatctcagaacctaagcgatggagcgagatctagggttactcgggagcgagc 631

                                                                       
Query: 123 gataacacggt--acaggtaaacgaaaaggatggatcgataactaggataactggccgac 180
           |||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 gataacacggtagacaggtaaacgaaaaggatagatcgataactaggataactggccgac 571

                                                         
Query: 181 aaggggccccaccattcactccctccagttgccgncgccgaagccg 226
           |||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 570 aaggggccccaccattcactccctccagttgccgccgccggagccg 525



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>dbj|AB207971.1| Lolium perenne gene for glycine-rich RNA-binding protein, complete
            cds
          Length = 2129

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 81   cctaagcgatggagcgagatctagg 105
            ||||||||||||||||||| |||||
Sbjct: 1884 cctaagcgatggagcgagacctagg 1860



 Score = 42.1 bits (21), Expect = 0.73
 Identities = 49/57 (85%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                     
Query: 158  gataactaggataactggccgacaaggggccccaccattcactccctccagttgccg 214
            |||| ||||||||||||||| ||  | |||||||||| ||| | |||||||||||||
Sbjct: 1813 gatagctaggataactggcc-actcgtggccccaccaatcagttcctccagttgccg 1758



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>gb|AC122900.3| Mus musculus BAC clone RP23-39N24 from 15, complete sequence
          Length = 203855

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   cccaccattcactccctcca 207
             ||||||||||||||||||||
Sbjct: 86463 cccaccattcactccctcca 86482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 974,455
Number of Sequences: 3902068
Number of extensions: 974455
Number of successful extensions: 54593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54584
Number of HSP's gapped (non-prelim): 7
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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