Clone Name | rbasd14g02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 296 gactttgcatgtgaaaccaccaactgagctggatcctttatagctggaaatgtacactcc 355 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 3675202 gactttgcatgtgaaatcattaactgagccggatcctttatagctgggaatgtacactca 3675261 Query: 356 atgtttccatct 367 ||||||||||| Sbjct: 3675262 gtgtttccatct 3675273
>dbj|AK101515.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046F12, full insert sequence Length = 2211 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 296 gactttgcatgtgaaaccaccaactgagctggatcctttatagctggaaatgtacactcc 355 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 1148 gactttgcatgtgaaatcattaactgagccggatcctttatagctgggaatgtacactca 1089 Query: 356 atgtttccatct 367 ||||||||||| Sbjct: 1088 gtgtttccatct 1077
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 296 gactttgcatgtgaaaccaccaactgagctggatcctttatagctggaaatgtacactcc 355 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 3675176 gactttgcatgtgaaatcattaactgagccggatcctttatagctgggaatgtacactca 3675235 Query: 356 atgtttccatct 367 ||||||||||| Sbjct: 3675236 gtgtttccatct 3675247
>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104421 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 296 gactttgcatgtgaaaccaccaactgagctggatcctttatagctggaaatgtacactcc 355 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 74471 gactttgcatgtgaaatcattaactgagccggatcctttatagctgggaatgtacactca 74412 Query: 356 atgtttccatct 367 ||||||||||| Sbjct: 74411 gtgtttccatct 74400
>emb|AL731761.3|CNS07YPV Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 122128 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 296 gactttgcatgtgaaaccaccaactgagctggatcctttatagctggaaatgtacactcc 355 |||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| Sbjct: 14197 gactttgcatgtgaaatcattaactgagccggatcctttatagctgggaatgtacactca 14138 Query: 356 atgtttccatct 367 ||||||||||| Sbjct: 14137 gtgtttccatct 14126
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ttccctcctcctgtcctgtcct 260 |||||||||||||||||||||| Sbjct: 152232 ttccctcctcctgtcctgtcct 152211
>gb|AC034258.10| Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete sequence Length = 117157 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 ttccctcctcctgtcctgtcct 260 |||||||||||||||||||||| Sbjct: 84740 ttccctcctcctgtcctgtcct 84761
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ttccctcctcctgtcctgtcct 260 |||||||||||||||||||||| Sbjct: 16273343 ttccctcctcctgtcctgtcct 16273322
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 239 ttccctcctcctgtcctgtcct 260 |||||||||||||||||||||| Sbjct: 16281584 ttccctcctcctgtcctgtcct 16281563
>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence Length = 237801 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 tttatagctggaaatgtacac 352 ||||||||||||||||||||| Sbjct: 50653 tttatagctggaaatgtacac 50633
>gb|AC153725.3| Medicago truncatula clone mth2-78c5, complete sequence Length = 137377 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 166 ttgacaaaaattggatgagaa 186 ||||||||||||||||||||| Sbjct: 127579 ttgacaaaaattggatgagaa 127599
>emb|BX323079.7| Zebrafish DNA sequence from clone DKEYP-113D7 in linkage group 19, complete sequence Length = 165200 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 163 agtttgacaaaaattggatgagaagcaca 191 |||||||||||| ||||||||||| |||| Sbjct: 154358 agtttgacaaaatttggatgagaaacaca 154330
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 tttatagctggaaatgtacac 352 ||||||||||||||||||||| Sbjct: 152901 tttatagctggaaatgtacac 152881
>gb|AC168089.5| Mus musculus BAC clone RP23-299A14 from chromosome 6, complete sequence Length = 179444 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 tcctgtcctctacttcttctgggtg 276 |||||||||||||| |||||||||| Sbjct: 111754 tcctgtcctctactccttctgggtg 111730
>gb|AC166157.5| Mus musculus BAC clone RP24-193D9 from chromosome 1, complete sequence Length = 160305 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 catgtttccatctctgctct 374 |||||||||||||||||||| Sbjct: 45624 catgtttccatctctgctct 45605
>gb|AC151834.7| Mus musculus BAC clone RP23-382M10 from chromosome 8, complete sequence Length = 208404 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 ctcctcctgtcctgtcctct 262 |||||||||||||||||||| Sbjct: 134660 ctcctcctgtcctgtcctct 134679
>gb|AY548793.1| Enterococcus faecalis clone etaRS response regulator and sensor histidine kinase genes, complete cds Length = 2220 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tttatttagtaacacatcac 28 |||||||||||||||||||| Sbjct: 558 tttatttagtaacacatcac 539
>ref|XM_849271.1| PREDICTED: Canis familiaris similar to fibrous sheath interacting protein 2 (LOC611589), mRNA Length = 5133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 gcacaagtttttgttgatca 206 |||||||||||||||||||| Sbjct: 3838 gcacaagtttttgttgatca 3819
>gb|AC068756.17| Homo sapiens 3 BAC RP11-47P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 81319 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgtatatatttatttagtaa 20 |||||||||||||||||||| Sbjct: 30777 tgtatatatttatttagtaa 30796
>gb|AC117454.5| Homo sapiens 3 BAC RP11-312P21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 125001 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 agttctaaagtacaggtgcacagc 125 ||||||| |||||||||||||||| Sbjct: 105394 agttctagagtacaggtgcacagc 105417
>gb|AC116442.3| Homo sapiens chromosome 3 clone RP11-534H12, complete sequence Length = 175610 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tgtatatatttatttagtaa 20 |||||||||||||||||||| Sbjct: 50556 tgtatatatttatttagtaa 50537
>emb|AJ002153.2|SOAJ2153 Saguinus oedipus gene for seminal vesicle secreted protein semenogelin I Length = 19292 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 agaagcacaagtttttgttg 202 |||||||||||||||||||| Sbjct: 16594 agaagcacaagtttttgttg 16575
>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the 3' end of the Dbccr1 gene for deleted in bladder cancer chromosome region candidate 1 (human), complete sequence Length = 203865 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 tcctgtcctctacttcttctgggt 275 |||||||||||||||||| ||||| Sbjct: 175131 tcctgtcctctacttcttttgggt 175154
>emb|BX470182.12| Zebrafish DNA sequence from clone CH211-195P4 in linkage group 16, complete sequence Length = 199742 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 164 gtttgacaaaaattggatgagaagcaca 191 ||||||||||| ||||||||||| |||| Sbjct: 124368 gtttgacaaaatttggatgagaaacaca 124341
>gb|AC011939.9| Homo sapiens chromosome 15, clone RP11-16E23, complete sequence Length = 162964 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgtatatatttatttagtaa 20 |||||||||||||||||||| Sbjct: 58551 tgtatatatttatttagtaa 58570
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 atgtacactccatgtttcca 364 |||||||||||||||||||| Sbjct: 24173 atgtacactccatgtttcca 24192
>gb|AC020905.9| Homo sapiens chromosome 19 clone CTB-70G10, complete sequence Length = 141513 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 agttctaaagtacaggtgcacagc 125 |||||||| ||||||||||||||| Sbjct: 70563 agttctaaggtacaggtgcacagc 70586
>gb|AC079452.5| Homo sapiens BAC clone RP11-964P11 from 2, complete sequence Length = 178573 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgtatatatttatttagtaa 20 |||||||||||||||||||| Sbjct: 73003 tgtatatatttatttagtaa 73022
>gb|AC087040.6|AC087040 Mus musculus 1 BAC RP23-269M3 (RPCI Mouse BAC) complete sequence Length = 142488 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 catgtttccatctctgctct 374 |||||||||||||||||||| Sbjct: 119176 catgtttccatctctgctct 119157
>ref|XM_226322.3| PREDICTED: Rattus norvegicus Iroquois related homeobox 3 (Drosophila) (predicted) (Irx3_predicted), mRNA Length = 2305 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ctcctcctgtcctgtcctct 262 |||||||||||||||||||| Sbjct: 22 ctcctcctgtcctgtcctct 3
>gb|AC007327.1|AC007327 Homo sapiens clone RP11-155G7 from 7p14-15, complete sequence Length = 169347 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 acacaacaaaatagttctaa 109 |||||||||||||||||||| Sbjct: 48444 acacaacaaaatagttctaa 48463
>emb|AL844187.13| Zebrafish DNA sequence from clone DKEY-221D18 in linkage group 16, complete sequence Length = 168637 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 164 gtttgacaaaaattggatgagaagcaca 191 ||||||||||| ||||||||||| |||| Sbjct: 1741 gtttgacaaaatttggatgagaaacaca 1768
>emb|BX088644.9| Zebrafish DNA sequence from clone CH211-157L15 in linkage group 20, complete sequence Length = 175570 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 164 gtttgacaaaaattggatgagaagcaca 191 ||||| ||||||||||||||||| |||| Sbjct: 122185 gtttggcaaaaattggatgagaaacaca 122158
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tttatttagtaacacatcac 28 |||||||||||||||||||| Sbjct: 1015878 tttatttagtaacacatcac 1015859
>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence Length = 175181 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ctcctcctgtcctgtcctct 262 |||||||||||||||||||| Sbjct: 165565 ctcctcctgtcctgtcctct 165546
>gb|BC067195.1| Mus musculus cDNA clone IMAGE:5716597, containing frame-shift errors Length = 2375 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ctcctcctgtcctgtcctct 262 |||||||||||||||||||| Sbjct: 22 ctcctcctgtcctgtcctct 3
>emb|BX890608.15| Zebrafish DNA sequence from clone CH211-195J11 in linkage group 2, complete sequence Length = 194388 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 tcaacatagtttgacaaaaattgg 179 ||||||||||||||||||| |||| Sbjct: 40583 tcaacatagtttgacaaaatttgg 40606
>gb|AC126054.5| Mus musculus BAC clone RP23-298O13 from 8, complete sequence Length = 233117 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 tccctcctcctgtcctgtcc 259 |||||||||||||||||||| Sbjct: 42211 tccctcctcctgtcctgtcc 42230
>emb|AL928959.9| Mouse DNA sequence from clone RP23-73I19 on chromosome 2, complete sequence Length = 143937 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 atatatttatttagtaacacatca 27 ||||||||||||||||| |||||| Sbjct: 97025 atatatttatttagtaagacatca 97002
>emb|AL805911.6| Mouse DNA sequence from clone RP23-71K8 on chromosome X, complete sequence Length = 157092 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 aacaaaatagttctaaagta 113 |||||||||||||||||||| Sbjct: 133544 aacaaaatagttctaaagta 133525 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,683,801 Number of Sequences: 3902068 Number of extensions: 5683801 Number of successful extensions: 131519 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131259 Number of HSP's gapped (non-prelim): 260 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)