>ESC_MUSDO (O16023) Polycomb protein esc (Protein extra sex combs)|
          Length = 428

 Score = 33.1 bits (74), Expect = 0.74
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 348 INSDGNWASESLPLGNTLGLEMLLVAAAAGSKRPEALLSEFACPESGGIRLMPSMLEPEP 527
           +  D   A   +   + LG +  +V A AGS R     + + CP  GG++L+    +P+P
Sbjct: 69  LKEDHGQAIFGVSFNHLLGKDQSMVFATAGSNR----CNIYECPRKGGLKLIMCYADPDP 124

Query: 528 ------VPRRFRLSSASPILA 572
                     + L +++P+LA
Sbjct: 125 DEVFYTCSWSYDLKTSAPLLA 145

>RNT_SALTY (P66684) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -2

Query: 263 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 135
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P  LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77

>RNT_SALTI (P66685) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = -2

Query: 263 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHP*WLAF 135
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P  LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77

>ESC_DROME (Q24338) Polycomb protein esc (Protein extra sex combs)|
          Length = 425

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
 Frame = +3

Query: 399 LGLEMLLVAAAAGSKRPEALLSEFACPESGGIRLMPSMLEPEP------VPRRFRLSSAS 560
           LG +   V A AGS R    ++ + CP  GG++L+    +P+P          + L ++S
Sbjct: 85  LGKDEPQVFATAGSNR----VTVYECPRQGGMQLLHCYADPDPDEVFYTCAWSYDLKTSS 140

Query: 561 PILA 572
           P+LA
Sbjct: 141 PLLA 144

>ENV_HV1Z2 (P12487) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 853

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 490 PPDSGQANSDNSASGRFDPAAAATNNISSPRVLPNGSDSEAQFPSELISSCVATI 326
           PP  GQ N  ++ +G        TNN S+    P G D    + SEL    V  I
Sbjct: 434 PPIEGQINCSSNITGLLLTRDGGTNNSSNETFRPGGGDMRDNWRSELYKYKVVKI 488

>ENV_HV1Z6 (P04580) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 855

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = -3

Query: 490 PPDSGQANSDNSASGRFDPAAAATNNISSPRVLPNGSDSEAQFPSELISSCVATI 326
           PP  GQ N  ++ +G        TNN S+    P G D    + SEL    V  I
Sbjct: 436 PPIEGQINCSSNITGLLLTRDGGTNNSSNETFRPGGGDMRDNWRSELYKYKVVKI 490

>RDP1_SCHPO (O13862) Transcriptional activator protein rdp1 (Rhp51-DRE-binding|
           protein 1)
          Length = 478

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -3

Query: 493 IPPDSGQANSDNSASGRFDPAAA---ATNNISSPRVLPNGSDSEAQFPSELISSCVATIL 323
           IPP +  A SD S     +P+AA   A   +++   L NG  +  + P  L SS V    
Sbjct: 250 IPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGV-NPPEVPRNLNSSLVDAAE 308

Query: 322 MIQNCTEKQYH 290
            + N +++Q+H
Sbjct: 309 SLANVSQQQHH 319

>YFGA_ECOLI (P27434) Putative HTH-type transcriptional regulator yfgA|
          Length = 337

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -1

Query: 462 ITAPLAASILPQQRPITFPAQEYCPTAATPKP 367
           +TAP A ++ PQQ  +  P+Q    TAATP P
Sbjct: 196 VTAP-APAVDPQQNAVVSPSQANVDTAATPAP 226

>NEIL1_MOUSE (Q8K4Q6) Endonuclease VIII-like 1 (EC 3.2.2.-) (EC 4.2.99.18)|
           (Nei-like 1) (DNA glycosylase/AP lyase Neil1)
           (DNA-(apurinic or apyrimidinic site) lyase Neil1) (NEH1)
          Length = 388

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 414 LLVAAAAGSKRPEALLS-EFACPESGGIRLMPSMLEPEPVPRRFRLSSASPILAKCVLSF 590
           L ++   GS+ P+  LS  F    SG  +L+P+   P     RF  +  +P LA C +  
Sbjct: 57  LTLSPLPGSQPPQKPLSLVFRFGMSGSFQLVPAEALPRHAHLRFYTAPPAPRLALCFVDI 116

Query: 591 TYFAH 605
             F H
Sbjct: 117 RRFGH 121

>KLP3_CAEEL (P45962) Kinesin-like protein klp-3|
          Length = 598

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 547 NLNLRGTGSG-SSILGIRRIPPDSGQANSDNSASGRFDPAAAATN-NISSPR 398
           NL +R T  G SSI G+  +  +S +  ++  A GR + A AAT  NI S R
Sbjct: 392 NLAIRQTEEGRSSIPGLEEVSVNSAEEVTETLARGRKNKAVAATEANIESSR 443

>PRM2_HORSE (P15342) Sperm histone P2a (Protamine 2a) (ST2a)|
          Length = 62

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -1

Query: 318 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSR-CAWVSSRTRCWR 163
           YR  RR   +PR+      +R R   R  RR C      R C  V  R RC R
Sbjct: 8   YRRYRRRCCSPRRLYRLRRRRYRSSRRRRRRPCRRRRHRRVCRRVRRRRRCCR 60

>GSC_DROME (P54366) Homeobox protein goosecoid|
          Length = 419

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
 Frame = -2

Query: 431 RSSDQ*HFQPKSIAQRQRLRSPV-PVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPR--- 264
           RS  +    P S +      SP+ P RV  +++  HP     H  A +  G  A P    
Sbjct: 153 RSGAESPASPNSNSSSSAAASPIRPQRVPAMLQ--HPGLHLGHLAAAAASGFAASPSDFL 210

Query: 263 ----------LSAVAAATVQLAE-RAHLQGDR---DVHGYHQEPDAGADTHP*WLAFMHG 126
                     + A A A V  A+ +AH+ G       HG+H     G   HP   A  HG
Sbjct: 211 VAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHG 270

Query: 125 QQH 117
           Q H
Sbjct: 271 QHH 273

>SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1078

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 186 IPMHISISLKMGTFCELHGCSRDSAE--SRMCATS 284
           +P+ IS+  K+G     HG SR+  E  +R+C TS
Sbjct: 94  LPVEISVEKKLGWLGRNHGASREELEEFNRLCRTS 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,906,075
Number of Sequences: 219361
Number of extensions: 2190340
Number of successful extensions: 7036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7036
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)